Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g02055 ATGGGCTGCATTTGCTCTAAGGGAATTCCAGCAAACGATTATTTTACTGAGAATCATTCCAAAGAGAGGCATTTGAAGTCTAATAGATCATCCAGACTTCTTGGGGCTTCATTGAGAAAAGAAGAACCTGCATTGCACGTTGATGTAGGGCGAAGTGATGCAATGGCGCTATTGATATCTAACCAACCTGGGGAAGTTAATGCTGGATCAACACCTGAATTGGATGACGCTGAGAAGGCAGCAGCCAGTGCCAAGCCACTGCGTCAAGAACAGCCAACTATGGAGGATGGAGCAAAGAGAGTAGGAGTACATAATGATAATGCAATACCTAGAATAGTTAATGTTGTTAATGTGGAAGAGGGGGCTTTGGTTATTGCTGGATGGCCTTCTTGGTTGATATCTGTGGCTGGAGAAGCAATCAATGGATTGATTCCTAGAAAGGCAGACTCTTTTCAGAAGTTGGATAAGGTTGGACAAGGAACGTACAGCAGTGTGTACAGGGCCTGCGATATTGAAACAAACAAGATTGTTGCATTGAAGAAGGTGCGATTTTCTAACATGGATCCTGAAAGCGTTCGTTTCATGGCGAGGGAAATTCTTATCCTGCGTAGGCTTGACCACCCCAATGTCATGAAGCTTGAAGGTCTTATTACTTCAAGGGTATCGGGCAGTTTATACCTCATATTTGAGCACATGGAACATGATCTTGCAGGGTTGGCAGCAACCCCAGGGATCAAGTTCACTGAAGCACAGATTAAATGCTATATGCAACAGCTGCTTTGTGGCCTTGAACATTGCCATGCCCAAGGTGTTTTGCACCGTGACATCAAGGGCTCAAATCTTCTGATTGACAATAATGGTAACCTAAAGATAGGTGATTTTGGGCTATCAACCTTTTTCCATTCCCGTCAAAAGCAGGCTCTTACAAGTCGTGTGGTAACTTTGTGGTATCGGCCACCTGAGCTTTTACTTGGTGCAAAGGACTATGAAGTTTCTGTTGATTTGTGGAGTTCAGGTTGCATTCTTGCAGAATTATATGCTGGGAAGCCTATCATGCCTGGAAGAACAGAGATCTTCAAACTCTGTGGCTCCCCATCTGAAGAATACTGGAAAAAATCAAAATTACCTCATGCCACCATCTTTAAACCTCAACATCCTTACAAGCGGTGTGTTGCTGAGACATTCAAAGACTTCCCTTCCTCTGCATTGGCCCTTTTGGATGTGCTTCTTGCGGTGGAGCCTGATGGCCGTGGAACAGCTTCCTCTGCCCTTCAAAGTCAGTTCTTTACCACCAAACCGCTTCCCTCGGATCCCTCTACTTTGCCAAAGTACCCACCAAGCAAGGAGTTTGACGCGAAGCTCCGAGACGAGGAATCTCGAAGAAGAAAAGCTCCTATCAGTGTAGCACGTGAACATGAAGCAGCTCAAAAGTGTCCCAGAGAATCAAAAGCGATTCCTGCACCAGATGCAAATGCTGAATTGCAGGCATCCATACAGAAGAAACAAAGGCAGCATAATCCCACAAGTTGCAGTGAAAAGTATATTCCTGAAGAGGATGGTGGCTCTGGCTTTCGCATCGAACCCCCAAAAGAAGCAACGCAAATGGCGTCGACTGCATTGGGTTCTTCACAAAACATGAACGGGAATCAGCGTGATAATCTAAGAGGTTCTTCAGTTGGAGCCAAAGGTGCAGAACTTAGAAAACAAAGATCTTATGTGCAGCATGGTGGTGTAAAGTTGTCCAGGTATTCCAATTCCATTGCAGTTCGAGGTGGTTCACGATTCGGCTGTGGGCCAGAAGAGTGTTTTAATGTGTCATATAACCGTTTCAATGACGTTGAATCTTCAGAAAAGCATGAATGGTCTCACCATTTACTAGACACACCAAAATCTTCATACAAGATAGATGATCAGTCATCTGGAAAAGTGTCTATTAACAGTTATGCTCCAAAGAAGAGAATTCACTACTCAGGACCCCTGATGCCTGCTGGTGGAAACCTTGAGGAAATGTTAAAGGAGCACGAGAAACAAATGCAGCATGGGGTGCGCAAGGCTCGTATCGACAAAGCTAAGATAAACAAGACGCAACGACAAAGGTCAAACGGAGTCGTTGCTTCACCATGCGAGAAACGGCAGTTGAGCATTCATTATATGCTGGATCTGAAGCTAGAGCGTGGAGCATTTCTCCATTCACCCATGGCACTGGTGATACACGCAGGAAAGACGAATAAAAATTCTTTCAAGGCTCTCATTGCTGCAGAGTACAATGGAGTCGAAGTGAAATTGATCCCAGACTTTGAGATGGGAGTCTCAAACAAGACTCCGGAGTTTATCAAGATGAACCCTATTGGGAAGGTTCCTGTTTTGGAAACGCCCGATGGCCCCATATTTGAGAGCAATGCAATAGCCCGTTATGTTGCACGCTTGAAGGCTGATAGTCCTCTGTTTGGTTCATCTTCGATAGATTATGGGCATATTGAACAATGGATTGATTTTGCATCATTAGAGATAGATCCTAATATTTTGACTTGGTATAGACCTAGAATTGGGAGAGCTGCTTATCTTCCACCTGTTGAGGAAGCTGCGATTGCTGCATTGAAGAGAGCTTTGGGAGCTTTGAATACGCACCTTGCTTCAAACACATACCTAGTTGGTCATTTTGTAACATTAGCTGACATCATCATGACTTGCAATCTCTTATTGGGTTTTACTAAGTTAATGACTAAGAGCTTTACCTCAGAGTTCCCACATGTTGAGAGGTACTTCTGGACCTTAGTCAATCAACCAAACTTCAAAAAAATTCTGGGTGAGGTGAAGCAGGCAGAGTCAGTTCCGCCTGTTCAATCTGCTAAGAAACCTGATGAATCTGCTAAGCAAAAGCACAAAGATGAGGTAAAGAAAGAACCTAAAAAGGAAGTAGAAAAAGAGAAGCCCAAGGCGGAAGTTGGCGAGGGAGAGGATGAGGCACCAAAGCCTAAACCCAAAAATCCTCTTGACTTGCTTCCTCCCAGTAAGATGATTCTGGATGAGTGGAAGCGGCTGTACTCGAATACCAAAACCAACTTCCGGGAGGTTGCAATTAAAGGATTTTGGGACATGTACGATCCAGAGGGATATTCTCTTTGGTTCTGCGATTACAAGTACGACGATGAGAATACTGTTTCGTTTGTGACTTTGAACAAGGTTGGTGGCTTTCTCCAGCGGATGGATCTCGCACGTAAGTATGCTTTCGGGAAGATGTTAGTGATTGGATCCGAACCTCCATTTAAGGTGAAGGGATTGTGGCTGTTCCGTGGGCAAGAGATCCCAACGTTCGTCCTGGACGAGTGCTATGACATGGAACTGTATGAATGGAGGAAGGTGGATATATCAGACGAGGCACAAAAGGAACGCGTGAACCAGATGATTGAAGATCATGAGCCTTTTGAAGGAGAGGCTTTGTTGGACGCCAAATGCTTCAAGTGA 3465 44.59 MGCICSKGIPANDYFTENHSKERHLKSNRSSRLLGASLRKEEPALHVDVGRSDAMALLISNQPGEVNAGSTPELDDAEKAAASAKPLRQEQPTMEDGAKRVGVHNDNAIPRIVNVVNVEEGALVIAGWPSWLISVAGEAINGLIPRKADSFQKLDKVGQGTYSSVYRACDIETNKIVALKKVRFSNMDPESVRFMAREILILRRLDHPNVMKLEGLITSRVSGSLYLIFEHMEHDLAGLAATPGIKFTEAQIKCYMQQLLCGLEHCHAQGVLHRDIKGSNLLIDNNGNLKIGDFGLSTFFHSRQKQALTSRVVTLWYRPPELLLGAKDYEVSVDLWSSGCILAELYAGKPIMPGRTEIFKLCGSPSEEYWKKSKLPHATIFKPQHPYKRCVAETFKDFPSSALALLDVLLAVEPDGRGTASSALQSQFFTTKPLPSDPSTLPKYPPSKEFDAKLRDEESRRRKAPISVAREHEAAQKCPRESKAIPAPDANAELQASIQKKQRQHNPTSCSEKYIPEEDGGSGFRIEPPKEATQMASTALGSSQNMNGNQRDNLRGSSVGAKGAELRKQRSYVQHGGVKLSRYSNSIAVRGGSRFGCGPEECFNVSYNRFNDVESSEKHEWSHHLLDTPKSSYKIDDQSSGKVSINSYAPKKRIHYSGPLMPAGGNLEEMLKEHEKQMQHGVRKARIDKAKINKTQRQRSNGVVASPCEKRQLSIHYMLDLKLERGAFLHSPMALVIHAGKTNKNSFKALIAAEYNGVEVKLIPDFEMGVSNKTPEFIKMNPIGKVPVLETPDGPIFESNAIARYVARLKADSPLFGSSSIDYGHIEQWIDFASLEIDPNILTWYRPRIGRAAYLPPVEEAAIAALKRALGALNTHLASNTYLVGHFVTLADIIMTCNLLLGFTKLMTKSFTSEFPHVERYFWTLVNQPNFKKILGEVKQAESVPPVQSAKKPDESAKQKHKDEVKKEPKKEVEKEKPKAEVGEGEDEAPKPKPKNPLDLLPPSKMILDEWKRLYSNTKTNFREVAIKGFWDMYDPEGYSLWFCDYKYDDENTVSFVTLNKVGGFLQRMDLARKYAFGKMLVIGSEPPFKVKGLWLFRGQEIPTFVLDECYDMELYEWRKVDISDEAQKERVNQMIEDHEPFEGEALLDAKCFK 1154
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 11482638 11496036 - CmoCh04G020550.1 Cmo04g02055 381030
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g02055 1154 ProSiteProfiles Protein kinase domain profile. 151 429 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo04g02055 1154 PANTHER CELL DIVISION PROTEIN KINASE 87 743 - -
Cmo04g02055 1154 SUPERFAMILY Protein kinase-like (PK-like) 146 436 IPR011009 -
Cmo04g02055 1154 MobiDBLite consensus disorder prediction 63 98 - -
Cmo04g02055 1154 Gene3D Phosphorylase Kinase; domain 1 140 233 - -
Cmo04g02055 1154 Gene3D Translation elongation factor EF1B, gamma chain, conserved domain 994 1154 IPR036433 GO:0003746|GO:0006414
Cmo04g02055 1154 MobiDBLite consensus disorder prediction 942 1001 - -
Cmo04g02055 1154 MobiDBLite consensus disorder prediction 535 556 - -
Cmo04g02055 1154 SMART serkin_6 151 429 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo04g02055 1154 Gene3D Transferase(Phosphotransferase) domain 1 234 468 - -
Cmo04g02055 1154 CDD GST_N_EF1Bgamma 735 809 - -
Cmo04g02055 1154 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 819 947 IPR010987 -
Cmo04g02055 1154 SFLD Glutathione Transferase (cytosolic) 738 922 IPR040079 -
Cmo04g02055 1154 Pfam Glutathione S-transferase, C-terminal domain 860 929 IPR004046 -
Cmo04g02055 1154 ProSitePatterns Protein kinases ATP-binding region signature. 157 180 IPR017441 GO:0005524
Cmo04g02055 1154 Pfam Glutathione S-transferase, N-terminal domain 743 808 IPR004045 -
Cmo04g02055 1154 SFLD Main (cytGST) 738 922 - -
Cmo04g02055 1154 MobiDBLite consensus disorder prediction 495 511 - -
Cmo04g02055 1154 ProSiteProfiles Elongation factor 1 (EF-1) gamma C-terminal domain profile. 994 1154 IPR001662 GO:0003746|GO:0006414
Cmo04g02055 1154 Gene3D - 812 948 - -
Cmo04g02055 1154 SUPERFAMILY eEF1-gamma domain 994 1154 IPR036433 GO:0003746|GO:0006414
Cmo04g02055 1154 SUPERFAMILY Thioredoxin-like 731 816 IPR036249 -
Cmo04g02055 1154 SMART EF1G_2 993 1101 IPR001662 GO:0003746|GO:0006414
Cmo04g02055 1154 Pfam Protein kinase domain 151 429 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo04g02055 1154 Gene3D Glutaredoxin 733 806 - -
Cmo04g02055 1154 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 733 814 IPR004045 -
Cmo04g02055 1154 MobiDBLite consensus disorder prediction 429 570 - -
Cmo04g02055 1154 ProSitePatterns Serine/Threonine protein kinases active-site signature. 271 283 IPR008271 GO:0004672|GO:0006468
Cmo04g02055 1154 Pfam Elongation factor 1 gamma, conserved domain 993 1101 IPR001662 GO:0003746|GO:0006414
Cmo04g02055 1154 SUPERFAMILY GST C-terminal domain-like 805 946 IPR036282 -
Cmo04g02055 1154 CDD GST_C_EF1Bgamma_like 822 942 - -
Cmo04g02055 1154 MobiDBLite consensus disorder prediction 448 479 - -
Cmo04g02055 1154 PANTHER BNACNNG19830D PROTEIN 87 743 - -
Cmo04g02055 1154 MobiDBLite consensus disorder prediction 953 994 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00957 Cmo-Chr4:4875621 Cmo04g02055 Cmo-Chr4:11482638 0 dispersed
Cmo04g02055 Cmo-Chr4:11482638 Cmo06g00920 Cmo-Chr6:6618306 0 dispersed
Cmo06g00918 Cmo-Chr6:6516291 Cmo04g02055 Cmo-Chr4:11482638 1.67E-78 dispersed
Cmo04g02055 Cmo-Chr4:11482638 Cmo04g00583 Cmo-Chr4:2911153 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74292 PF00069 Pkinase 9.90E-65 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g02055 - - csv:101214435 1165.21