Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo04g02055 | ATGGGCTGCATTTGCTCTAAGGGAATTCCAGCAAACGATTATTTTACTGAGAATCATTCCAAAGAGAGGCATTTGAAGTCTAATAGATCATCCAGACTTCTTGGGGCTTCATTGAGAAAAGAAGAACCTGCATTGCACGTTGATGTAGGGCGAAGTGATGCAATGGCGCTATTGATATCTAACCAACCTGGGGAAGTTAATGCTGGATCAACACCTGAATTGGATGACGCTGAGAAGGCAGCAGCCAGTGCCAAGCCACTGCGTCAAGAACAGCCAACTATGGAGGATGGAGCAAAGAGAGTAGGAGTACATAATGATAATGCAATACCTAGAATAGTTAATGTTGTTAATGTGGAAGAGGGGGCTTTGGTTATTGCTGGATGGCCTTCTTGGTTGATATCTGTGGCTGGAGAAGCAATCAATGGATTGATTCCTAGAAAGGCAGACTCTTTTCAGAAGTTGGATAAGGTTGGACAAGGAACGTACAGCAGTGTGTACAGGGCCTGCGATATTGAAACAAACAAGATTGTTGCATTGAAGAAGGTGCGATTTTCTAACATGGATCCTGAAAGCGTTCGTTTCATGGCGAGGGAAATTCTTATCCTGCGTAGGCTTGACCACCCCAATGTCATGAAGCTTGAAGGTCTTATTACTTCAAGGGTATCGGGCAGTTTATACCTCATATTTGAGCACATGGAACATGATCTTGCAGGGTTGGCAGCAACCCCAGGGATCAAGTTCACTGAAGCACAGATTAAATGCTATATGCAACAGCTGCTTTGTGGCCTTGAACATTGCCATGCCCAAGGTGTTTTGCACCGTGACATCAAGGGCTCAAATCTTCTGATTGACAATAATGGTAACCTAAAGATAGGTGATTTTGGGCTATCAACCTTTTTCCATTCCCGTCAAAAGCAGGCTCTTACAAGTCGTGTGGTAACTTTGTGGTATCGGCCACCTGAGCTTTTACTTGGTGCAAAGGACTATGAAGTTTCTGTTGATTTGTGGAGTTCAGGTTGCATTCTTGCAGAATTATATGCTGGGAAGCCTATCATGCCTGGAAGAACAGAGATCTTCAAACTCTGTGGCTCCCCATCTGAAGAATACTGGAAAAAATCAAAATTACCTCATGCCACCATCTTTAAACCTCAACATCCTTACAAGCGGTGTGTTGCTGAGACATTCAAAGACTTCCCTTCCTCTGCATTGGCCCTTTTGGATGTGCTTCTTGCGGTGGAGCCTGATGGCCGTGGAACAGCTTCCTCTGCCCTTCAAAGTCAGTTCTTTACCACCAAACCGCTTCCCTCGGATCCCTCTACTTTGCCAAAGTACCCACCAAGCAAGGAGTTTGACGCGAAGCTCCGAGACGAGGAATCTCGAAGAAGAAAAGCTCCTATCAGTGTAGCACGTGAACATGAAGCAGCTCAAAAGTGTCCCAGAGAATCAAAAGCGATTCCTGCACCAGATGCAAATGCTGAATTGCAGGCATCCATACAGAAGAAACAAAGGCAGCATAATCCCACAAGTTGCAGTGAAAAGTATATTCCTGAAGAGGATGGTGGCTCTGGCTTTCGCATCGAACCCCCAAAAGAAGCAACGCAAATGGCGTCGACTGCATTGGGTTCTTCACAAAACATGAACGGGAATCAGCGTGATAATCTAAGAGGTTCTTCAGTTGGAGCCAAAGGTGCAGAACTTAGAAAACAAAGATCTTATGTGCAGCATGGTGGTGTAAAGTTGTCCAGGTATTCCAATTCCATTGCAGTTCGAGGTGGTTCACGATTCGGCTGTGGGCCAGAAGAGTGTTTTAATGTGTCATATAACCGTTTCAATGACGTTGAATCTTCAGAAAAGCATGAATGGTCTCACCATTTACTAGACACACCAAAATCTTCATACAAGATAGATGATCAGTCATCTGGAAAAGTGTCTATTAACAGTTATGCTCCAAAGAAGAGAATTCACTACTCAGGACCCCTGATGCCTGCTGGTGGAAACCTTGAGGAAATGTTAAAGGAGCACGAGAAACAAATGCAGCATGGGGTGCGCAAGGCTCGTATCGACAAAGCTAAGATAAACAAGACGCAACGACAAAGGTCAAACGGAGTCGTTGCTTCACCATGCGAGAAACGGCAGTTGAGCATTCATTATATGCTGGATCTGAAGCTAGAGCGTGGAGCATTTCTCCATTCACCCATGGCACTGGTGATACACGCAGGAAAGACGAATAAAAATTCTTTCAAGGCTCTCATTGCTGCAGAGTACAATGGAGTCGAAGTGAAATTGATCCCAGACTTTGAGATGGGAGTCTCAAACAAGACTCCGGAGTTTATCAAGATGAACCCTATTGGGAAGGTTCCTGTTTTGGAAACGCCCGATGGCCCCATATTTGAGAGCAATGCAATAGCCCGTTATGTTGCACGCTTGAAGGCTGATAGTCCTCTGTTTGGTTCATCTTCGATAGATTATGGGCATATTGAACAATGGATTGATTTTGCATCATTAGAGATAGATCCTAATATTTTGACTTGGTATAGACCTAGAATTGGGAGAGCTGCTTATCTTCCACCTGTTGAGGAAGCTGCGATTGCTGCATTGAAGAGAGCTTTGGGAGCTTTGAATACGCACCTTGCTTCAAACACATACCTAGTTGGTCATTTTGTAACATTAGCTGACATCATCATGACTTGCAATCTCTTATTGGGTTTTACTAAGTTAATGACTAAGAGCTTTACCTCAGAGTTCCCACATGTTGAGAGGTACTTCTGGACCTTAGTCAATCAACCAAACTTCAAAAAAATTCTGGGTGAGGTGAAGCAGGCAGAGTCAGTTCCGCCTGTTCAATCTGCTAAGAAACCTGATGAATCTGCTAAGCAAAAGCACAAAGATGAGGTAAAGAAAGAACCTAAAAAGGAAGTAGAAAAAGAGAAGCCCAAGGCGGAAGTTGGCGAGGGAGAGGATGAGGCACCAAAGCCTAAACCCAAAAATCCTCTTGACTTGCTTCCTCCCAGTAAGATGATTCTGGATGAGTGGAAGCGGCTGTACTCGAATACCAAAACCAACTTCCGGGAGGTTGCAATTAAAGGATTTTGGGACATGTACGATCCAGAGGGATATTCTCTTTGGTTCTGCGATTACAAGTACGACGATGAGAATACTGTTTCGTTTGTGACTTTGAACAAGGTTGGTGGCTTTCTCCAGCGGATGGATCTCGCACGTAAGTATGCTTTCGGGAAGATGTTAGTGATTGGATCCGAACCTCCATTTAAGGTGAAGGGATTGTGGCTGTTCCGTGGGCAAGAGATCCCAACGTTCGTCCTGGACGAGTGCTATGACATGGAACTGTATGAATGGAGGAAGGTGGATATATCAGACGAGGCACAAAAGGAACGCGTGAACCAGATGATTGAAGATCATGAGCCTTTTGAAGGAGAGGCTTTGTTGGACGCCAAATGCTTCAAGTGA | 3465 | 44.59 | MGCICSKGIPANDYFTENHSKERHLKSNRSSRLLGASLRKEEPALHVDVGRSDAMALLISNQPGEVNAGSTPELDDAEKAAASAKPLRQEQPTMEDGAKRVGVHNDNAIPRIVNVVNVEEGALVIAGWPSWLISVAGEAINGLIPRKADSFQKLDKVGQGTYSSVYRACDIETNKIVALKKVRFSNMDPESVRFMAREILILRRLDHPNVMKLEGLITSRVSGSLYLIFEHMEHDLAGLAATPGIKFTEAQIKCYMQQLLCGLEHCHAQGVLHRDIKGSNLLIDNNGNLKIGDFGLSTFFHSRQKQALTSRVVTLWYRPPELLLGAKDYEVSVDLWSSGCILAELYAGKPIMPGRTEIFKLCGSPSEEYWKKSKLPHATIFKPQHPYKRCVAETFKDFPSSALALLDVLLAVEPDGRGTASSALQSQFFTTKPLPSDPSTLPKYPPSKEFDAKLRDEESRRRKAPISVAREHEAAQKCPRESKAIPAPDANAELQASIQKKQRQHNPTSCSEKYIPEEDGGSGFRIEPPKEATQMASTALGSSQNMNGNQRDNLRGSSVGAKGAELRKQRSYVQHGGVKLSRYSNSIAVRGGSRFGCGPEECFNVSYNRFNDVESSEKHEWSHHLLDTPKSSYKIDDQSSGKVSINSYAPKKRIHYSGPLMPAGGNLEEMLKEHEKQMQHGVRKARIDKAKINKTQRQRSNGVVASPCEKRQLSIHYMLDLKLERGAFLHSPMALVIHAGKTNKNSFKALIAAEYNGVEVKLIPDFEMGVSNKTPEFIKMNPIGKVPVLETPDGPIFESNAIARYVARLKADSPLFGSSSIDYGHIEQWIDFASLEIDPNILTWYRPRIGRAAYLPPVEEAAIAALKRALGALNTHLASNTYLVGHFVTLADIIMTCNLLLGFTKLMTKSFTSEFPHVERYFWTLVNQPNFKKILGEVKQAESVPPVQSAKKPDESAKQKHKDEVKKEPKKEVEKEKPKAEVGEGEDEAPKPKPKNPLDLLPPSKMILDEWKRLYSNTKTNFREVAIKGFWDMYDPEGYSLWFCDYKYDDENTVSFVTLNKVGGFLQRMDLARKYAFGKMLVIGSEPPFKVKGLWLFRGQEIPTFVLDECYDMELYEWRKVDISDEAQKERVNQMIEDHEPFEGEALLDAKCFK | 1154 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 11482638 | 11496036 | - | CmoCh04G020550.1 | Cmo04g02055 | 381030 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo04g02055 | 1154 | ProSiteProfiles | Protein kinase domain profile. | 151 | 429 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cmo04g02055 | 1154 | PANTHER | CELL DIVISION PROTEIN KINASE | 87 | 743 | - | - | |
Cmo04g02055 | 1154 | SUPERFAMILY | Protein kinase-like (PK-like) | 146 | 436 | IPR011009 | - | |
Cmo04g02055 | 1154 | MobiDBLite | consensus disorder prediction | 63 | 98 | - | - | |
Cmo04g02055 | 1154 | Gene3D | Phosphorylase Kinase; domain 1 | 140 | 233 | - | - | |
Cmo04g02055 | 1154 | Gene3D | Translation elongation factor EF1B, gamma chain, conserved domain | 994 | 1154 | IPR036433 | GO:0003746|GO:0006414 | |
Cmo04g02055 | 1154 | MobiDBLite | consensus disorder prediction | 942 | 1001 | - | - | |
Cmo04g02055 | 1154 | MobiDBLite | consensus disorder prediction | 535 | 556 | - | - | |
Cmo04g02055 | 1154 | SMART | serkin_6 | 151 | 429 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cmo04g02055 | 1154 | Gene3D | Transferase(Phosphotransferase) domain 1 | 234 | 468 | - | - | |
Cmo04g02055 | 1154 | CDD | GST_N_EF1Bgamma | 735 | 809 | - | - | |
Cmo04g02055 | 1154 | ProSiteProfiles | Soluble glutathione S-transferase C-terminal domain profile. | 819 | 947 | IPR010987 | - | |
Cmo04g02055 | 1154 | SFLD | Glutathione Transferase (cytosolic) | 738 | 922 | IPR040079 | - | |
Cmo04g02055 | 1154 | Pfam | Glutathione S-transferase, C-terminal domain | 860 | 929 | IPR004046 | - | |
Cmo04g02055 | 1154 | ProSitePatterns | Protein kinases ATP-binding region signature. | 157 | 180 | IPR017441 | GO:0005524 | |
Cmo04g02055 | 1154 | Pfam | Glutathione S-transferase, N-terminal domain | 743 | 808 | IPR004045 | - | |
Cmo04g02055 | 1154 | SFLD | Main (cytGST) | 738 | 922 | - | - | |
Cmo04g02055 | 1154 | MobiDBLite | consensus disorder prediction | 495 | 511 | - | - | |
Cmo04g02055 | 1154 | ProSiteProfiles | Elongation factor 1 (EF-1) gamma C-terminal domain profile. | 994 | 1154 | IPR001662 | GO:0003746|GO:0006414 | |
Cmo04g02055 | 1154 | Gene3D | - | 812 | 948 | - | - | |
Cmo04g02055 | 1154 | SUPERFAMILY | eEF1-gamma domain | 994 | 1154 | IPR036433 | GO:0003746|GO:0006414 | |
Cmo04g02055 | 1154 | SUPERFAMILY | Thioredoxin-like | 731 | 816 | IPR036249 | - | |
Cmo04g02055 | 1154 | SMART | EF1G_2 | 993 | 1101 | IPR001662 | GO:0003746|GO:0006414 | |
Cmo04g02055 | 1154 | Pfam | Protein kinase domain | 151 | 429 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cmo04g02055 | 1154 | Gene3D | Glutaredoxin | 733 | 806 | - | - | |
Cmo04g02055 | 1154 | ProSiteProfiles | Soluble glutathione S-transferase N-terminal domain profile. | 733 | 814 | IPR004045 | - | |
Cmo04g02055 | 1154 | MobiDBLite | consensus disorder prediction | 429 | 570 | - | - | |
Cmo04g02055 | 1154 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 271 | 283 | IPR008271 | GO:0004672|GO:0006468 | |
Cmo04g02055 | 1154 | Pfam | Elongation factor 1 gamma, conserved domain | 993 | 1101 | IPR001662 | GO:0003746|GO:0006414 | |
Cmo04g02055 | 1154 | SUPERFAMILY | GST C-terminal domain-like | 805 | 946 | IPR036282 | - | |
Cmo04g02055 | 1154 | CDD | GST_C_EF1Bgamma_like | 822 | 942 | - | - | |
Cmo04g02055 | 1154 | MobiDBLite | consensus disorder prediction | 448 | 479 | - | - | |
Cmo04g02055 | 1154 | PANTHER | BNACNNG19830D PROTEIN | 87 | 743 | - | - | |
Cmo04g02055 | 1154 | MobiDBLite | consensus disorder prediction | 953 | 994 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo04g00957 | Cmo-Chr4:4875621 | Cmo04g02055 | Cmo-Chr4:11482638 | 0 | dispersed | |
Cmo04g02055 | Cmo-Chr4:11482638 | Cmo06g00920 | Cmo-Chr6:6618306 | 0 | dispersed | |
Cmo06g00918 | Cmo-Chr6:6516291 | Cmo04g02055 | Cmo-Chr4:11482638 | 1.67E-78 | dispersed | |
Cmo04g02055 | Cmo-Chr4:11482638 | Cmo04g00583 | Cmo-Chr4:2911153 | 0 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
74292 | PF00069 | Pkinase | 9.90E-65 | CL0016 | Cmo | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo04g02055 | - | - | csv:101214435 | 1165.21 |