Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g02060 ATGGAAATGCCACAAGTAGCTCTTCCCTTGTTCACGGTGCTGCTTCTTTGTTTAGCATGCAACGCCCAACTTTCGTCTACCTTTTACGACCAAACATGTCCCAATGCACTCACCACAATTCAAACCGTGATTAGGCGAGCAATTTCTCAAGAACGTCGAATGGCAGCATATCTCATTCGCCTTCATTTTCATGATTGCTTCGTTCAAGGGTGTGATGCATCAATATTACTTGATGATACTCCATCTATGATCGGTGAAAAAAATGCAGCGGCAAACAAAAATTCAATTAGAGGTTATGAGGTGATTCACAAGGCCAAAAGTGAAGTTGAGAAAATTTGTCCTGGCATTGTATCTTGTGCCGATATTCTTGCTGTGGCTGCAAGAGATGCTTCGTTTGCTGTTGGTGGTCCATCTTGGAAAGTAAAACTTGGAAGAAGAGACTCTACCACTGCAAGCGCAACTCTTTCCGAGAGAGAGTTTTCAATTTTTCAAGTGGGTGTTGAAGGACTTATCTCAATTTTTGCAAACAAAGGCCTTAGCATAAGAGATATGGTTGCACTATCAGGTTCTCATACTATAGGACAAGCCCGATGCTTCTTTTTCAAGAATAGAATATACAATCAAAGTAACATTGATGCCGGATTTGCTAAAATTCGCCGGAAGAAATGTCCAGCATCAGATGGAAATACCAATTTGGCACCTCTAGATTTGGTCACACCCAATTCCTTTGACAATAACTATTTCAAAAACCTTATACAAAAGAAGGGTTTGCTTGAAACTGATCAACTCCTTTTTAGTGGAGGACCAACCGATAATATTGTTACAGAATACAGCAGAGATCCAACGGCATTCAAATCTGACTTTGCCACTGCAATGATCAAAATGGGAGACATTCAGCCTCTAATAGGAATGGAAGGGCAAATAAGAAATATATGCAGTGCGGTCAACTAA 951 40.48 MEMPQVALPLFTVLLLCLACNAQLSSTFYDQTCPNALTTIQTVIRRAISQERRMAAYLIRLHFHDCFVQGCDASILLDDTPSMIGEKNAAANKNSIRGYEVIHKAKSEVEKICPGIVSCADILAVAARDASFAVGGPSWKVKLGRRDSTTASATLSEREFSIFQVGVEGLISIFANKGLSIRDMVALSGSHTIGQARCFFFKNRIYNQSNIDAGFAKIRRKKCPASDGNTNLAPLDLVTPNSFDNNYFKNLIQKKGLLETDQLLFSGGPTDNIVTEYSRDPTAFKSDFATAMIKMGDIQPLIGMEGQIRNICSAVN 316
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 11623246 11624447 - CmoCh04G020600.1 Cmo04g02060 381035
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g02060 316 Gene3D Peroxidase, domain 2 161 295 - -
Cmo04g02060 316 ProSiteProfiles Plant heme peroxidase family profile. 23 316 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cmo04g02060 316 SUPERFAMILY Heme-dependent peroxidases 23 316 IPR010255 GO:0004601|GO:0006979|GO:0020037
Cmo04g02060 316 ProSitePatterns Peroxidases active site signature. 55 66 IPR019794 GO:0004601
Cmo04g02060 316 Gene3D - 27 313 - -
Cmo04g02060 316 PRINTS Haem peroxidase superfamily signature 55 69 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cmo04g02060 316 PRINTS Haem peroxidase superfamily signature 117 134 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cmo04g02060 316 PRINTS Haem peroxidase superfamily signature 135 147 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cmo04g02060 316 PRINTS Haem peroxidase superfamily signature 183 198 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cmo04g02060 316 PRINTS Haem peroxidase superfamily signature 236 251 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cmo04g02060 316 Pfam Peroxidase 41 280 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cmo04g02060 316 ProSitePatterns Peroxidases proximal heme-ligand signature. 183 193 IPR019793 -
Cmo04g02060 316 CDD secretory_peroxidase 23 315 IPR033905 GO:0004601|GO:0042744
Cmo04g02060 316 PANTHER PEROXIDASE 72-RELATED 7 315 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cmo04g02060 316 PRINTS Plant peroxidase signature 33 52 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cmo04g02060 316 PRINTS Plant peroxidase signature 57 77 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cmo04g02060 316 PRINTS Plant peroxidase signature 97 110 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cmo04g02060 316 PRINTS Plant peroxidase signature 116 126 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cmo04g02060 316 PRINTS Plant peroxidase signature 135 150 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cmo04g02060 316 PRINTS Plant peroxidase signature 182 194 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cmo04g02060 316 PRINTS Plant peroxidase signature 234 249 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cmo04g02060 316 PRINTS Plant peroxidase signature 250 267 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cmo04g02060 316 PRINTS Plant peroxidase signature 290 303 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cmo04g02060 316 PANTHER PEROXIDASE 7 315 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g02060 Cmo-Chr4:11623246 Cmo11g01337 Cmo-Chr11:9258069 0 dispersed
Cmo04g02060 Cmo-Chr4:11623246 Cmo04g02062 Cmo-Chr4:11653293 2.28E-12 proximal
Cmo04g02060 Cmo-Chr4:11623246 Cmo04g02061 Cmo-Chr4:11651445 4.08E-08 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g02060 K00430 - csv:116403994 507.294