Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cmo04g02100 | ATGCGAAGTGGGAACTTGACTTGCATATCGTCCAGTGAGAGCTTGGAGGGTGATGAAGGAGGAGGAGGAGGAGGAGGAGGAGAAGACTCTATTTTCCTTTCTCTTTGTCCGCCAGGCCAACGCCACACAGTTTCTTCCAAACACCGACAACTCCAAAACAAACAAATTCCTGTTAGCCCTAATTCCTCTCTCCAAAACCCTAATATTCTTCATCATCAACATGCTGCTGTCACCGTCGCTATGCATATTGGTCCCCCTGCCACCGCCGCCGCCACCGAATCCAACGACGTCTCCGCTGCCCGCCCGGTTGATGGCCAGTACTGGATCCCTACGCCTGCCCAAATCCTCGTTGGTCCCACCCAGTTCTCCTGCTCTGTCTGCAGTAAAACCTTCAACAGATACAACAACATGCAGATGCACATGTGGGGACATGGATCACAATACAGAAAAGGGCCAGAATCATTAAGAGGATCAAAGCCAGCTTCATCAATGCTACGACTTCCATGCTATTGCTGTGCAGAAGGGTGCAAAAACAACATAGAGCATCCAAGGTCAAGGCCATTGAAAGACTTCAGGACTCTTCAGACCCATTACAAGAGAAAGCATGGAGCAAAGCCTTTCAGTTGTAGGAAATGTGGGAAGCCCTTTGCAGTCCGTGGGGATTGGAGGACACATGAGAAGAACTGTGGAAAGCTTTGGTTTTGCATTTGTGGGTCTGATTTTAAGCACAAAAGATCCCTTAAAGACCATGTTCGAGCCTTTGGAGATGGGCATGCACCTCATACCGTCCAACTTTGTGAGGTTGAAGATGATGATTGGGATGATAATGATGATCATGAACATGTAAATGGAGCTCAACCCTGGTCAATTTATCATTAA | 879 | 47.9 | MRSGNLTCISSSESLEGDEGGGGGGGGEDSIFLSLCPPGQRHTVSSKHRQLQNKQIPVSPNSSLQNPNILHHQHAAVTVAMHIGPPATAAATESNDVSAARPVDGQYWIPTPAQILVGPTQFSCSVCSKTFNRYNNMQMHMWGHGSQYRKGPESLRGSKPASSMLRLPCYCCAEGCKNNIEHPRSRPLKDFRTLQTHYKRKHGAKPFSCRKCGKPFAVRGDWRTHEKNCGKLWFCICGSDFKHKRSLKDHVRAFGDGHAPHTVQLCEVEDDDWDDNDDHEHVNGAQPWSIYH | 292 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 13168839 | 13170051 | - | CmoCh04G021000.1 | Cmo04g02100 | 381075 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cmo04g02100 | 292 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 122 | 149 | IPR013087 | - | |
| Cmo04g02100 | 292 | SMART | c2h2final6 | 122 | 144 | IPR013087 | - | |
| Cmo04g02100 | 292 | SMART | c2h2final6 | 170 | 202 | IPR013087 | - | |
| Cmo04g02100 | 292 | SMART | c2h2final6 | 207 | 227 | IPR013087 | - | |
| Cmo04g02100 | 292 | Pfam | Zinc finger, C2H2 type | 122 | 141 | IPR013087 | - | |
| Cmo04g02100 | 292 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 124 | 144 | IPR013087 | - | |
| Cmo04g02100 | 292 | SUPERFAMILY | beta-beta-alpha zinc fingers | 118 | 144 | IPR036236 | - | |
| Cmo04g02100 | 292 | MobiDBLite | consensus disorder prediction | 1 | 31 | - | - | |
| Cmo04g02100 | 292 | PANTHER | ZINC FINGER PROTEIN WIP2 | 10 | 281 | IPR043584 | GO:0003700|GO:0010468 | |
| Cmo04g02100 | 292 | Gene3D | Classic Zinc Finger | 121 | 144 | - | - | |
| Cmo04g02100 | 292 | Gene3D | Classic Zinc Finger | 165 | 253 | - | - | |
| Cmo04g02100 | 292 | PANTHER | ZINC FINGER PROTEIN WIP6 | 10 | 281 | - | - | |
| Cmo04g02100 | 292 | SUPERFAMILY | beta-beta-alpha zinc fingers | 190 | 227 | IPR036236 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cmo04g02100 | Cmo-Chr4:13168839 | Cmo07g01338 | Cmo-Chr7:7574902 | 1.03E-105 | dispersed | |
| Cmo08g00525 | Cmo-Chr8:3286506 | Cmo04g02100 | Cmo-Chr4:13168839 | 3.15E-13 | dispersed | |
| Cmo13g00264 | Cmo-Chr13:2191858 | Cmo04g02100 | Cmo-Chr4:13168839 | 7.58E-26 | dispersed | |
| Cmo04g02100 | Cmo-Chr4:13168839 | Cmo03g00099 | Cmo-Chr3:1387909 | 2.12E-106 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 9672 | PF00096 | zf-C2H2 | 0.012 | CL0361 | Cmo | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cmo04g02100 | - | - | mcha:111022346 | 452.981 |