Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g02100 ATGCGAAGTGGGAACTTGACTTGCATATCGTCCAGTGAGAGCTTGGAGGGTGATGAAGGAGGAGGAGGAGGAGGAGGAGGAGAAGACTCTATTTTCCTTTCTCTTTGTCCGCCAGGCCAACGCCACACAGTTTCTTCCAAACACCGACAACTCCAAAACAAACAAATTCCTGTTAGCCCTAATTCCTCTCTCCAAAACCCTAATATTCTTCATCATCAACATGCTGCTGTCACCGTCGCTATGCATATTGGTCCCCCTGCCACCGCCGCCGCCACCGAATCCAACGACGTCTCCGCTGCCCGCCCGGTTGATGGCCAGTACTGGATCCCTACGCCTGCCCAAATCCTCGTTGGTCCCACCCAGTTCTCCTGCTCTGTCTGCAGTAAAACCTTCAACAGATACAACAACATGCAGATGCACATGTGGGGACATGGATCACAATACAGAAAAGGGCCAGAATCATTAAGAGGATCAAAGCCAGCTTCATCAATGCTACGACTTCCATGCTATTGCTGTGCAGAAGGGTGCAAAAACAACATAGAGCATCCAAGGTCAAGGCCATTGAAAGACTTCAGGACTCTTCAGACCCATTACAAGAGAAAGCATGGAGCAAAGCCTTTCAGTTGTAGGAAATGTGGGAAGCCCTTTGCAGTCCGTGGGGATTGGAGGACACATGAGAAGAACTGTGGAAAGCTTTGGTTTTGCATTTGTGGGTCTGATTTTAAGCACAAAAGATCCCTTAAAGACCATGTTCGAGCCTTTGGAGATGGGCATGCACCTCATACCGTCCAACTTTGTGAGGTTGAAGATGATGATTGGGATGATAATGATGATCATGAACATGTAAATGGAGCTCAACCCTGGTCAATTTATCATTAA 879 47.9 MRSGNLTCISSSESLEGDEGGGGGGGGEDSIFLSLCPPGQRHTVSSKHRQLQNKQIPVSPNSSLQNPNILHHQHAAVTVAMHIGPPATAAATESNDVSAARPVDGQYWIPTPAQILVGPTQFSCSVCSKTFNRYNNMQMHMWGHGSQYRKGPESLRGSKPASSMLRLPCYCCAEGCKNNIEHPRSRPLKDFRTLQTHYKRKHGAKPFSCRKCGKPFAVRGDWRTHEKNCGKLWFCICGSDFKHKRSLKDHVRAFGDGHAPHTVQLCEVEDDDWDDNDDHEHVNGAQPWSIYH 292
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
4 13168839 13170051 - CmoCh04G021000.1 Cmo04g02100 381075
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g02100 292 ProSiteProfiles Zinc finger C2H2 type domain profile. 122 149 IPR013087 -
Cmo04g02100 292 SMART c2h2final6 122 144 IPR013087 -
Cmo04g02100 292 SMART c2h2final6 170 202 IPR013087 -
Cmo04g02100 292 SMART c2h2final6 207 227 IPR013087 -
Cmo04g02100 292 Pfam Zinc finger, C2H2 type 122 141 IPR013087 -
Cmo04g02100 292 ProSitePatterns Zinc finger C2H2 type domain signature. 124 144 IPR013087 -
Cmo04g02100 292 SUPERFAMILY beta-beta-alpha zinc fingers 118 144 IPR036236 -
Cmo04g02100 292 MobiDBLite consensus disorder prediction 1 31 - -
Cmo04g02100 292 PANTHER ZINC FINGER PROTEIN WIP2 10 281 IPR043584 GO:0003700|GO:0010468
Cmo04g02100 292 Gene3D Classic Zinc Finger 121 144 - -
Cmo04g02100 292 Gene3D Classic Zinc Finger 165 253 - -
Cmo04g02100 292 PANTHER ZINC FINGER PROTEIN WIP6 10 281 - -
Cmo04g02100 292 SUPERFAMILY beta-beta-alpha zinc fingers 190 227 IPR036236 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g02100 Cmo-Chr4:13168839 Cmo07g01338 Cmo-Chr7:7574902 1.03E-105 dispersed
Cmo08g00525 Cmo-Chr8:3286506 Cmo04g02100 Cmo-Chr4:13168839 3.15E-13 dispersed
Cmo13g00264 Cmo-Chr13:2191858 Cmo04g02100 Cmo-Chr4:13168839 7.58E-26 dispersed
Cmo04g02100 Cmo-Chr4:13168839 Cmo03g00099 Cmo-Chr3:1387909 2.12E-106 transposed
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9672 PF00096 zf-C2H2 0.012 CL0361 Cmo TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g02100 - - mcha:111022346 452.981