Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g02102 ATGGACACAACAAGCTCTTTAGACGACAGCGCCGCCAGTGACTCCACCTCCGTCTCTCCCGTCACCCCATTACTCTTCCACTCCTCCTCCTCCCCCGGAGTACCCCACGACGCCGAATCCCGGAAGCTTCCATCTTCCCGTTTCAAAGGGGTCGTCCCTCAGCCCAACGGCCGATGGGGGGCTCAGATTTACGAGAAGCACCAAAGGGTCTGGTTGGGCACATTCAACCACGAACACCAGGCCGCCAAAGCCTACGACATCGCCGCCCTCCGCTTCCGCGGCCGCGACGCTGTCACCAATTTCAAGCCCGGCGCCTTCTCTTCCGTCGACGCCGCCTTCGAGGCTGACTTTCTCAACTCCCACTCCAAGCTCGAGATCGTCGACATGCTCCGCAAACACACCTACAATGACGAGCTCCAGCAAAGCAAGCGATACGGTGGAGGAACGACGACGACGACGACGACAGCGGCGGCGGCGGCGCACTCTCTCCAGAACGCGGCGTCGGAGTCGGACCGGGAGGTGCTGTTTGAGAAAACCGTGACGCCGAGCGACGTGGGGAAGTTGAACCGGCTGGTGATTCCGAAGCAGCACGCGGAGAAGAATTTTCCATTGGGGGAAGGGATGGGTTCGGCCAAAGGAGTACTCCTGAATTTCGAGGATATGGGAGGGAAGCTGTGGCGGTTCCGGTACTCGTATTGGAACAGCAGCCAGAGCTATGTGTTGACCAAGGGATGGAGCCGGTTCGTAAAAGAGAAAACCCTCAGAGCCGGGGACGTGGTCCGGTTCCTACGCTCGACCGGCCCGGATAAGAAGCTTTACATCGATGGCAGAGCAGGCGGAGTGAAGCCGGTTCAAGTGGTAAAGCTATTTGGAGTGAATATTTTGGAAGTGCCGGTGGGGTGGTGCGGGAAGAGAGACAGAGAAGGCCTGTCGGAATTAGAAAGGACGAAGAAGCAAAGAATAATCAAAGCATTGTAA 978 57.87 MDTTSSLDDSAASDSTSVSPVTPLLFHSSSSPGVPHDAESRKLPSSRFKGVVPQPNGRWGAQIYEKHQRVWLGTFNHEHQAAKAYDIAALRFRGRDAVTNFKPGAFSSVDAAFEADFLNSHSKLEIVDMLRKHTYNDELQQSKRYGGGTTTTTTTAAAAAHSLQNAASESDREVLFEKTVTPSDVGKLNRLVIPKQHAEKNFPLGEGMGSAKGVLLNFEDMGGKLWRFRYSYWNSSQSYVLTKGWSRFVKEKTLRAGDVVRFLRSTGPDKKLYIDGRAGGVKPVQVVKLFGVNILEVPVGWCGKRDREGLSELERTKKQRIIKAL 325
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 13302123 13303100 - CmoCh04G021020.1 Cmo04g02102 381077
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g02102 325 MobiDBLite consensus disorder prediction 1 35 - -
Cmo04g02102 325 SUPERFAMILY DNA-binding pseudobarrel domain 172 267 IPR015300 -
Cmo04g02102 325 SMART rav1_2 47 108 IPR001471 GO:0003700|GO:0006355
Cmo04g02102 325 PANTHER AP2/ERF AND B3 DOMAIN-CONTAINING TRANSCRIPTION REPRESSOR TEM1 35 301 - -
Cmo04g02102 325 SUPERFAMILY DNA-binding domain 46 102 IPR016177 GO:0003677
Cmo04g02102 325 Gene3D AP2/ERF domain 46 103 IPR036955 GO:0003700|GO:0006355
Cmo04g02102 325 Pfam AP2 domain 47 94 IPR001471 GO:0003700|GO:0006355
Cmo04g02102 325 ProSiteProfiles AP2/ERF domain profile. 47 102 IPR001471 GO:0003700|GO:0006355
Cmo04g02102 325 ProSiteProfiles B3 DNA-binding domain profile. 176 278 IPR003340 GO:0003677
Cmo04g02102 325 SMART B3_2 176 278 IPR003340 GO:0003677
Cmo04g02102 325 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 35 301 IPR044800 GO:0003700
Cmo04g02102 325 Pfam B3 DNA binding domain 176 273 IPR003340 GO:0003677
Cmo04g02102 325 Gene3D - 164 282 IPR015300 -
Cmo04g02102 325 MobiDBLite consensus disorder prediction 1 54 - -
Cmo04g02102 325 CDD AP2 46 101 IPR001471 GO:0003700|GO:0006355
Cmo04g02102 325 CDD B3_DNA 175 262 IPR003340 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g02102 Cmo-Chr4:13302123 Cmo11g00834 Cmo-Chr11:4237476 2.82E-53 dispersed
Cmo15g01051 Cmo-Chr15:6789326 Cmo04g02102 Cmo-Chr4:13302123 2.75E-175 transposed
Cmo18g01060 Cmo-Chr18:11230116 Cmo04g02102 Cmo-Chr4:13302123 5.20E-130 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9673 PF02362 B3 9.00E-27 CL0405 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g02102 K09287 - csv:101206328 444.891