Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g02107 ATGTGCAGTATAGCGGAATGCTTTGCATTTCTTGTCTGCACGAAGTGGTATAATCCTATGATTCATAGGCATTCTCTTGTTAGAGAATCCAGTTCCTCTTCGCTGACCATTAGATACCTTGACTGGGATAGAGGTGTGGTTGTTTCCTCTGATGAGGTCCAACCCCAAGTCAGAGTTTGTAACTTGCAGGAAATTGGTGGACACATAATGAAGGTTCCTTTAATCATTTTCCAAATCATGCTTTTTATGCGCTTAGAGCTTCTGGGTTTCTCATTTCAAACATTTCAATTTCAGGGAACCCCTAGGAGTGCTTCCTATATTCCTTGTCTGGTTCTGTTCTCTCCTCTTTTCTTATTGCAAGGGGTGGGTTCAGTATTTGCGGCATATAGGTCAATAGAAAAAATTATAATTTTGCTAGTTGGTTCACCTACCTCTGTAAGATATCTTGATATAAGGTCGAAGGCTCGTGAACTGTTAGGGTTCATGCACCATGGATCGAGGTTGCTAGGTTGGTGGTCAATTGATGAAGGTAGTCAAGAGGAGCAAGCTAAACTTTATTCTGCTGGAAATTCTGGGTATGATACCTTCACACCTGAGACTGTAAAGAAAAGGACCAAATCCAATCTAGTTGATGAGATATGGAGATTACAAGCTGCATTAAATCAGCAGACAGAAGTTACGAAATTGAGCCGCCAGGAGCACGAAAAGCTTCTATATGAGAAGATTCTTTGTAGAGTATGCTTTGATGAACCCATTGATATGGTTCTTCTTCCGTGTAGGCATCACATTCTTTGCAGACTTCTGTATGAATTTGACTGTGTTCGTCACGAATGGGATTTCAGCTCTTGTAGTGAGAAGTGTAATCGTTGCCCAATCTGTCGGGAATCGATCGAAGAACGGCTGCCTATGGGACAGGCATCAACAGTGTCTAACAACATATGGTGTGTATACAAAATTTCTACACGGACCAAAGGCGATATTATCCCACATAGGCATTGTTCTTGCCACTATGTCCCTTATCACGTAGTGGTGTTCCATTTGACCATTCTTGCAAAATCCACCGCCAAGAATCTTACGACTTTTTATCAAGTTTTCCTTTCACCTCTTACATAA 1113 41.33 MCSIAECFAFLVCTKWYNPMIHRHSLVRESSSSSLTIRYLDWDRGVVVSSDEVQPQVRVCNLQEIGGHIMKVPLIIFQIMLFMRLELLGFSFQTFQFQGTPRSASYIPCLVLFSPLFLLQGVGSVFAAYRSIEKIIILLVGSPTSVRYLDIRSKARELLGFMHHGSRLLGWWSIDEGSQEEQAKLYSAGNSGYDTFTPETVKKRTKSNLVDEIWRLQAALNQQTEVTKLSRQEHEKLLYEKILCRVCFDEPIDMVLLPCRHHILCRLLYEFDCVRHEWDFSSCSEKCNRCPICRESIEERLPMGQASTVSNNIWCVYKISTRTKGDIIPHRHCSCHYVPYHVVVFHLTILAKSTAKNLTTFYQVFLSPLT 370
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 13502777 13505542 - CmoCh04G021070.1 Cmo04g02107 381082
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g02107 370 ProSiteProfiles Zinc finger RING-type profile. 244 294 IPR001841 -
Cmo04g02107 370 PANTHER TRANSMEMBRANE FRAGILE-X-F-ASSOCIATED PROTEIN 3 303 - -
Cmo04g02107 370 PANTHER TRANSMEMBRANE FRAGILE-X-F-ASSOCIATED PROTEIN 3 303 - -
Cmo04g02107 370 Pfam Transmembrane Fragile-X-F protein 3 119 IPR019396 -
Cmo04g02107 370 SUPERFAMILY RING/U-box 234 301 - -
Cmo04g02107 370 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 218 303 IPR013083 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g02107 Cmo-Chr4:13502777 Cmo11g00263 Cmo-Chr11:1296730 4.62E-113 dispersed
Cmo04g02107 Cmo-Chr4:13502777 Cmo10g00269 Cmo-Chr10:1183016 2.66E-107 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g02107 - - gra:105794150 374.785