Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g02109 ATGAAGGAGGAAGGAGAGTGCTTTCAGGGGTTTCAAGAGCACCTCCTAATGCAACAATTCCAGACTATGCAACAAAACAGCGACGTTTTTGGAGTAGGAGGTGGAGGAGGAGGAGGAGGCTTGATTTTTCCTGAAGTTTCTCCTATGATGTTTACGCCTCCGTGGACCGCGACCACAACCATCCCTCAAGTCCACCACGACCCCTTCATCCCGCCGCCGCCCCCACCTTCCTACGCCAGCTTCTTCAATAGGAGAAGTGCTTCTCTGCAGTTCCCTTACGATATTGGGAACAATAGCCTTGGAATTGGGCAGATGGGTCAGCCTGGGTCTGGCCCCTTTGGCCTGCAGGCCGAGCTGAGTAAGATGAGCGCTCAAGAAATAATGGACGCCAAAGCTCTTGCTGCCTCTAAAAGCCATAGTGAAGCTGAGAGAAGAAGAAGAGAGAGAATCAATAATCATCTTGCTAAGTTACGAAGCTTACTCCCAAGTACCACCAAAACGGACAAGGCATCCTTGCTTGCAGAGGTAATTCAACATGTAAAAGAGCTGAAACGCCAGACCACATTGATAGCTGATGTAAGTCCAGTTCCGACCGAGCTCGACGAGCTATCAGTTGACGTCGATGCATCGGACGAGGACGGTAAGTTCGTGATAAAAGCCTCACTTTGTTGTGAGGACAGGTCTGATCTTCTCCCACAGATCATTAAAACCCTGAAATCCCTCCGCTTGAGAACCCTAAAAGCGGAGATCACGACACTGGGCGGCCGAGTAAAGAACGTACTGTTTATCACCGGGGACGACGACTCCTCCAGCGACCAAGAGGAGGCTGAACAGCAGCAGCACCAATACAGCATCAGTTCCATTCAGGAAGCCCTAAAGGGAGTGATGGAAAAGGTTTGTAGCGAAGACCAATCATCCTCAGGCAGCATCAAAAGACAAAGGACCAATAATCACAACAACGTCAATATTTAG 972 49.69 MKEEGECFQGFQEHLLMQQFQTMQQNSDVFGVGGGGGGGGLIFPEVSPMMFTPPWTATTTIPQVHHDPFIPPPPPPSYASFFNRRSASLQFPYDIGNNSLGIGQMGQPGSGPFGLQAELSKMSAQEIMDAKALAASKSHSEAERRRRERINNHLAKLRSLLPSTTKTDKASLLAEVIQHVKELKRQTTLIADVSPVPTELDELSVDVDASDEDGKFVIKASLCCEDRSDLLPQIIKTLKSLRLRTLKAEITTLGGRVKNVLFITGDDDSSSDQEEAEQQQHQYSISSIQEALKGVMEKVCSEDQSSSGSIKRQRTNNHNNVNI 323
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 13557420 13559402 - CmoCh04G021090.1 Cmo04g02109 381084
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g02109 323 Gene3D - 129 189 IPR036638 GO:0046983
Cmo04g02109 323 SMART finulus 140 189 IPR011598 GO:0046983
Cmo04g02109 323 MobiDBLite consensus disorder prediction 297 323 - -
Cmo04g02109 323 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 134 183 IPR011598 GO:0046983
Cmo04g02109 323 MobiDBLite consensus disorder prediction 300 323 - -
Cmo04g02109 323 CDD bHLH_AtAIG1_like 129 208 - -
Cmo04g02109 323 PANTHER TRANSCRIPTION FACTOR BHLH30 57 321 - -
Cmo04g02109 323 Pfam Helix-loop-helix DNA-binding domain 137 183 IPR011598 GO:0046983
Cmo04g02109 323 PANTHER TRANSCRIPTION FACTOR BHLH30 57 321 IPR045847 GO:0003700|GO:0006355
Cmo04g02109 323 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 138 188 IPR036638 GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g01609 Cmo-Chr4:8196424 Cmo04g02109 Cmo-Chr4:13557420 6.81E-90 dispersed
Cmo04g02109 Cmo-Chr4:13557420 Cmo04g03020 Cmo-Chr4:21205605 1.56E-38 dispersed
Cmo06g00908 Cmo-Chr6:6296596 Cmo04g02109 Cmo-Chr4:13557420 1.52E-42 transposed
Cmo18g01065 Cmo-Chr18:11283669 Cmo04g02109 Cmo-Chr4:13557420 3.60E-110 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9674 PF00010 HLH 1.50E-12 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g02109 - - pvy:116145962 360.533