Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g02154 ATGGGAAGAACACTCGACGCTCTTCTTGGAAGAAATTTCAGAGCCTCCAAATTCCGCCCTCTTCTCAACCTCGCCCTCTCTCGTCTTGCCATTCTTACCAACCAACGCCGACTGAGGCGCTCCCAAGCTCAATCCGATGTTCTCCAACTCCTCCAACTCCACCACCAACAACGCGCCCTTCTTCGAGTTGAGCAAGTGATCAAGGACCAGAATGCCTTGGATGCGTACGTTTTGATTGAAGGGTACCTCAATCTCTTGATCGAAAGGACCTCCCTCCTCGAACAACAAAGAGACTGCCCTGAGGAATTGAAAGAGGCGATTGCAGGGTTGCTATTTGCTGCTTCCAGATGTGGGGATTTCCCTGAACTTCATGAGATTAAATCCGTTTTGACCTCTCGTTTTGGAAAGGAATTCACTGCTCGTGCAGTTGAATTACGCAACAACTGTGGAGTCAATCATTTGTTAATGCAGAAACTTTCCACGAGGCACCCAAATTTGGAGAGTAGAATGGATTTGCTCAAAACCATTGCTTCCGAGAATGGAATTACTCTGCAACTCGATGAAACTCCTCTTTCCAATGAGGCCAGAAACTCGAGACAAAACCAATCGGAGCCACATGGCGGAGTGGGAGAGAATCTGAAATTCTCCACTGAAGTCCCATCTGGATCGAAACAAAAGTACAAAGATGTGGCGGATGCAGCACAGGCCGCTTTTGAATCGGCAGCTCAAGCAGCAGCTGCGGCCAGAGCTGCCATGGAGCTCTCCCGCTCTGAATCACAAGACCCTGATGGTCCAAGCAGCCCGGGCCCTGGGTCTGCAACAACTTCATATCACAAACAAGAGCAAAAGAAATCCGAGGTCGAAGCCAAACCCAAATCGGAAATCGAATATGAATATGGAAAAGAAGAAGAAGGCAGCAAAATCAGAGCAGAAGCAGAAGTAAAGAATTCAATGTGTGGTTGTTCTTCGAACAGAGAGTTGTTTGTTAAAGAAAACAGAGAGATGGATGAACAGAGAGCTACAAATATTGAAATTGGGGAGGAGATGGAAGCGAATTTAGAGAAGACAGAGATAACTGAGAAACCAAGCTTTCGTTTAAATCTGGAGAAGAAGCCAATTTCAGTGAGAACAAGAAGAGTGCGTGGATACTGA 1152 46.7 MGRTLDALLGRNFRASKFRPLLNLALSRLAILTNQRRLRRSQAQSDVLQLLQLHHQQRALLRVEQVIKDQNALDAYVLIEGYLNLLIERTSLLEQQRDCPEELKEAIAGLLFAASRCGDFPELHEIKSVLTSRFGKEFTARAVELRNNCGVNHLLMQKLSTRHPNLESRMDLLKTIASENGITLQLDETPLSNEARNSRQNQSEPHGGVGENLKFSTEVPSGSKQKYKDVADAAQAAFESAAQAAAAARAAMELSRSESQDPDGPSSPGPGSATTSYHKQEQKKSEVEAKPKSEIEYEYGKEEEGSKIRAEAEVKNSMCGCSSNRELFVKENREMDEQRATNIEIGEEMEANLEKTEITEKPSFRLNLEKKPISVRTRRVRGY 383
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 15271122 15272919 + CmoCh04G021540.1 Cmo04g02154 381129

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g02154 383 MobiDBLite consensus disorder prediction 184 207 - -
Cmo04g02154 383 MobiDBLite consensus disorder prediction 249 307 - -
Cmo04g02154 383 MobiDBLite consensus disorder prediction 279 307 - -
Cmo04g02154 383 Gene3D - 6 194 IPR042277 -
Cmo04g02154 383 Pfam Regulator of Vps4 activity in the MVB pathway 21 182 IPR005061 GO:0015031
Cmo04g02154 383 PANTHER IST1 FAMILY MEMBER 8 380 IPR005061 GO:0015031
Cmo04g02154 383 MobiDBLite consensus disorder prediction 184 221 - -
Cmo04g02154 383 PANTHER REGULATOR OF VPS4 ACTIVITY IN THE MVB PATHWAY PROTEIN 8 380 - -
Cmo04g02154 383 MobiDBLite consensus disorder prediction 259 278 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g02154 - - - mcha:111010325 468.388
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g01604 Cmo-Chr4:8173707 Cmo04g02154 Cmo-Chr4:15271122 1.73E-89 dispersed
Cmo04g02154 Cmo-Chr4:15271122 Cmo14g00823 Cmo-Chr14:4252818 1.83E-79 dispersed
Cmo04g02154 Cmo-Chr4:15271122 Cmo04g02155 Cmo-Chr4:15291264 2.13E-123 tandem
Cmo18g01044 Cmo-Chr18:11151854 Cmo04g02154 Cmo-Chr4:15271122 1.67E-81 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g316 . . . . . . . . . . . . . . . . Cpe01g01794 . . . . . . . . . . . . . . . . . . . . . Cme10g01545 . . . . . Bpe02g02263 Bma01g00173 . . Cmo04g02154 . Cma04g02057 . Car04g01997 . . . . . . . . . . . . . . . . . . Csa05g01489 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002973 0 3 1 1 1 2 3 2 2 1 2 2 2 2 2 2 2 2 2 2 2 1 1 1 2 2 2 2 5 0 54
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo04g02154 Cmo_Chr04 FPKM 25.853554 28.213488 8.89797 9.23278 10.309524 10.344143 11.101137 14.132649 12.79724 14.471368