Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g02157 ATGCAGAGCTTTCATAACCCAGATCACCTCTATCCCCATTCTTCTTCTTCTTCTTCCATCCTTCTCCGGGGAGGAGACGACAGTGGTCACCATACGCGGTTTCTTCCGGATATTGAGGAGCTTCAACAATCCGCTGATTTTCGTCCCCATAATTCTGTTGATTTAAGCCCAAGCTCAGTTTTCAGTTTAAAATTGATCCACGACGCAGCTTTTCCAATCCACCACCTACCCTACGCGAACACGGATGTGGGTTCATTAGAAACAGGGTATTTAGACACAGGACAGCAATTGATGCGGTTGAAGAGGCTAGCTCCGCCGCAGACGGTGGCGGCTGCGTCATCGTTGGGAAACGGAAGCTTTGAGAACTGGGGTGAGTCAGCTATGGCTGATAATAGCCAGCAGACTGACACTTCTACAGACATCGACAATGATGAAAGAAACCAGTTTCCGGGAGCTGCTCATGGAGTTCTTGTGGCCGTGGATTCCATGGATCAATCTAAACCGAAATCTGCTGACCAGAAGACTCTTCGTAGGCTTGCTCAGAATCGAGAAGCAGCGAAGAAGAGTCGGCTGAGGAAGAAGAGGGGCCGCCGTCATGATCTTTGCCATGATGTTAAAGTTGGGATTTTTACATGTTATGTTGATGAAGGAAACATATTTGGAACATTTATAGGCATATGTCCAGCAGCTGGAAAACAGTCGACAGAGGCTTTCACAGCTAGAACAGGATCTTCATCGAGCACGCCAACAGGTGTTCCACCGACCGACACTTTCTGGGTTTCATTGTTGATTTTCTTTAATGGCATTTTTGTGGCTTCTGGGACAGCCAACCATTGTTTATCGATGCCAGGAAATGGTGCCTTGGCGTTTGATCTCGACTATGCACGGTGGCTCGACGAGCATCAACGTCTGATCAATGATTTGAGAGCATCGGCAAATTCTCAGTTGAGCGACGATGAATTGCGATTTCTTGTCGATGGGGTGATGGCACATTATGATGAACTCTTCAGGCTGAAAAGCGTTGGCGCCAAGGCTGACGTATTTCACATTCTTTCGGGCATGTGGAAGACTCCAGCCGAGAGGTGTTTCATGTGGCTAGGAGGATTCCGTTCGTCCGAACTTCTGAAGATAGTTGGGAACCATTTGGAGCCTTTAACGGATCAGCAGTTGATGGGCATATGCAATTTGCAGCAATCTTCACAACAAGCTGAAGATGCATTGTCACAAGGGATTGAAGCTTTGCAACAATCTCTTGTAGAAACTCTTTCCTCTGCTTCTTTAGGACCTGCCTGTTCCGGTAATGTTGCCGATTACATGGGCCAAATGGCTATAGCAATGAGCAAACTAACAACGCTAGAGAACTTTCTCCATCAGGTAAACACGTCGAACCTTTCGATTCGAGTTTTTGCTCGTCAAAACCACGTGACAAACAAGAAATCTTTCGCTGATCTTCTAAGACAACAAACGCTACAACAGATGCATCGAATACTAACTACTCGTCAAGCTGCACGAGCACTTCTCGTCATCAGTGATTACATTTCACGTCTTCGAGCTCTCAGTTCTCTGTGGTTAGCACGACCAAGAGACTGA 1590 46.79 MQSFHNPDHLYPHSSSSSSILLRGGDDSGHHTRFLPDIEELQQSADFRPHNSVDLSPSSVFSLKLIHDAAFPIHHLPYANTDVGSLETGYLDTGQQLMRLKRLAPPQTVAAASSLGNGSFENWGESAMADNSQQTDTSTDIDNDERNQFPGAAHGVLVAVDSMDQSKPKSADQKTLRRLAQNREAAKKSRLRKKRGRRHDLCHDVKVGIFTCYVDEGNIFGTFIGICPAAGKQSTEAFTARTGSSSSTPTGVPPTDTFWVSLLIFFNGIFVASGTANHCLSMPGNGALAFDLDYARWLDEHQRLINDLRASANSQLSDDELRFLVDGVMAHYDELFRLKSVGAKADVFHILSGMWKTPAERCFMWLGGFRSSELLKIVGNHLEPLTDQQLMGICNLQQSSQQAEDALSQGIEALQQSLVETLSSASLGPACSGNVADYMGQMAIAMSKLTTLENFLHQVNTSNLSIRVFARQNHVTNKKSFADLLRQQTLQQMHRILTTRQAARALLVISDYISRLRALSSLWLARPRD 529
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 15311231 15313855 - CmoCh04G021570.1 Cmo04g02157 381132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g02157 529 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 177 192 IPR004827 GO:0003700|GO:0006355
Cmo04g02157 529 Pfam Seed dormancy control 305 378 IPR025422 GO:0006351|GO:0043565
Cmo04g02157 529 ProSiteProfiles DOG1 domain profile. 287 526 IPR025422 GO:0006351|GO:0043565
Cmo04g02157 529 PANTHER TRANSCRIPTION FACTOR TGA9 268 459 - -
Cmo04g02157 529 PANTHER TRANSCRIPTION FACTOR PERIANTHIA 268 459 - -
Cmo04g02157 529 PANTHER TRANSCRIPTION FACTOR TGA9 98 194 - -
Cmo04g02157 529 PANTHER TRANSCRIPTION FACTOR TGA9 482 529 - -
Cmo04g02157 529 MobiDBLite consensus disorder prediction 1 23 - -
Cmo04g02157 529 PANTHER TRANSCRIPTION FACTOR PERIANTHIA 98 194 - -
Cmo04g02157 529 PANTHER TRANSCRIPTION FACTOR PERIANTHIA 482 529 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g02157 Cmo-Chr4:15311231 Cmo14g00514 Cmo-Chr14:2538400 3.32E-138 dispersed
Cmo15g00946 Cmo-Chr15:4867276 Cmo04g02157 Cmo-Chr4:15311231 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g02157 K14431 - ini:109160764 449.129