Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g02159 ATGATTTTCTCCCACAAAATGCAAGAAATTGCATTCAAAATGGGCTTCACTCTCTCCGATTTCGCCCACACTTTAGAACAAGAGCGCCGTAAAGTCCTCATGTTCCAGCGCGAGCTCCCTCTCTGTCTGGAGATTGTTACTCGCGCCATTGATTGTTGCAGGCATCACGTGTCGGAGACCACGACGGAGAATCGTCTATCGGAGTGTTCGGAGCAGACTTCCAGTGACGTGGGTCCGGTTCTTGAGGAGTTTATTCCGATTAATAGATATGGAGTTTCTGATTCTGAACAACAACAACAACGACAACTGCCCTGTGAAACTCAGACGGAGAACACTGATGACTCTGATCGAAATAATTTGAATTTGTGTCCGTCGGATTGGCTCAGATCTGCCCAGCTTTGGAAGGATCCTTCTGCCTTGAATCAGGACCTGCCGGAGAAGACGGCTGTTGTTGAGGTCAAGAGTAATGGCGGAGCTTTCCGACCATTTCAGAAGGAGAAAACCGGTGGTGGAGGAACATCATCGACTTCGGCTCCGGCTGCGACGAGCTCCACTGCGGAAATGGGGTCCGGTGGAAGTAATCGACGGGAAGTAAAAGAAGCGCAGAATCAGAGGAAACAAAGACGGTGCTGGTCACCGGAGCTACACCGGCGATTCCTTCATGCTCTTCAACAGCTCGGAGGTTCCCATGTGGCGACGCCGAAGCAAATCAGAGAGTTGATGAAGGTGGATGGTCTTACCAACGACGAAGTGAAAAGTCATTTACAGAAATATCGTCTACACACGAGACGCCCAAGTACAACAATGCACCACGACGACACCGCCCAGACGCCGCAGTTCCTGGTTGTGGGCGGTATATGGGTACCGGCTGCGGAGTACGCCACCACATCCACCGGAGAAGCAGTGAGAGCAGCCACCACGAACGGAATTTACGCACCGGTGGTTAGGACGGCGAGTACAGTGGGGAAGGCGAAGGCGAAGGTTATAGTATCTGGGGGTGCGGCGGAGTGTAATTCTGCTACTACATCGTCCTCCACACATACGTCATCAGTTTCACCTGCTTGA 1065 51.83 MIFSHKMQEIAFKMGFTLSDFAHTLEQERRKVLMFQRELPLCLEIVTRAIDCCRHHVSETTTENRLSECSEQTSSDVGPVLEEFIPINRYGVSDSEQQQQRQLPCETQTENTDDSDRNNLNLCPSDWLRSAQLWKDPSALNQDLPEKTAVVEVKSNGGAFRPFQKEKTGGGGTSSTSAPAATSSTAEMGSGGSNRREVKEAQNQRKQRRCWSPELHRRFLHALQQLGGSHVATPKQIRELMKVDGLTNDEVKSHLQKYRLHTRRPSTTMHHDDTAQTPQFLVVGGIWVPAAEYATTSTGEAVRAATTNGIYAPVVRTASTVGKAKAKVIVSGGAAECNSATTSSSTHTSSVSPA 354
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 15345324 15347445 - CmoCh04G021590.1 Cmo04g02159 381134

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g02159 354 MobiDBLite consensus disorder prediction 91 121 - -
Cmo04g02159 354 Pfam Myb-like DNA-binding domain 208 259 IPR001005 -
Cmo04g02159 354 Gene3D - 205 263 - -
Cmo04g02159 354 PANTHER TRANSCRIPTION FACTOR HHO2 18 350 - -
Cmo04g02159 354 MobiDBLite consensus disorder prediction 158 209 - -
Cmo04g02159 354 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 203 263 IPR017930 -
Cmo04g02159 354 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 18 350 IPR044787 GO:0003700|GO:0006355
Cmo04g02159 354 SUPERFAMILY Homeodomain-like 204 264 IPR009057 -
Cmo04g02159 354 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 206 261 IPR006447 GO:0003677
Cmo04g02159 354 MobiDBLite consensus disorder prediction 168 191 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g02159 - - - cpep:111786881 483.796
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g02159 Cmo-Chr4:15345324 Cmo10g00628 Cmo-Chr10:2842287 1.62E-51 dispersed
Cmo15g00948 Cmo-Chr15:4883149 Cmo04g02159 Cmo-Chr4:15345324 6.42E-162 wgd
Cmo18g01059 Cmo-Chr18:11226784 Cmo04g02159 Cmo-Chr4:15345324 3.67E-83 wgd
Cmo04g01592 Cmo-Chr4:8112425 Cmo04g02159 Cmo-Chr4:15345324 3.51E-91 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmo06g01253 CST 12 268 G2-like Transcription Factor Family AT3G24120 62.2 1.8e-76 283.5
Cmo14g01946 CST 1 257 G2-like Transcription Factor Family AT3G24120 61.3 8.9e-76 281.2
Cmo20g00312 . 22 194 G2-like Transcription Factor Family AT3G24120 54.6 6.0e-40 162.2
Cmo19g01150 . 18 168 G2-like Transcription Factor Family AT3G24120 58.3 7.9e-40 161.8
Cmo02g01694 . 4 151 G2-like Transcription Factor Family AT3G24120 54.3 1.1e-38 157.9
Cmo19g00220 . 4 152 G2-like Transcription Factor Family AT3G24120 52.5 1.3e-37 154.5
Cmo07g00367 . 31 149 G2-like Transcription Factor Family AT3G24120 68.0 2.8e-37 153.3
Cmo19g00231 CCT,CST 152 354 G2-like Transcription Factor Family AT5G16560 52.2 6.7e-42 169.1
Cmo09g00190 CCT 1 165 G2-like Transcription Factor Family AT5G42630 56.9 1.3e-39 160.6
Cmo12g00449 CCT,CST 4 143 G2-like Transcription Factor Family AT5G42630 58.3 9.4e-38 154.5
Cmo04g02159 . 20 256 G2-like Transcription Factor Family AT1G25550 52.2 1.1e-48 191.0
Cmo03g01093 . 1 304 G2-like Transcription Factor Family AT5G05090 54.3 5.7e-74 275.0
Cmo07g01147 . 1 299 G2-like Transcription Factor Family AT5G05090 54.5 1.4e-72 270.4
Cmo14g00500 . 1 277 G2-like Transcription Factor Family AT5G05090 58.6 1.7e-70 263.5
Cmo06g00028 . 1 285 G2-like Transcription Factor Family AT5G05090 52.9 5.0e-70 261.9
Cmo06g01253 CST 12 316 G2-like Transcription Factor Family AT4G13640 56.9 9.5e-62 234.6
Cmo14g01946 CST 1 293 G2-like Transcription Factor Family AT4G13640 57.6 5.2e-60 228.8
Cmo02g01770 CST 87 356 G2-like Transcription Factor Family AT3G04450 52.4 7.3e-57 218.8
Cmo06g01253 CST 12 268 G2-like Transcription Factor Family AT3G24120 62.2 1.8e-76 283.5
Cmo14g01946 CST 1 257 G2-like Transcription Factor Family AT3G24120 61.3 8.9e-76 281.2
Cmo20g00312 . 22 194 G2-like Transcription Factor Family AT3G24120 54.6 6.0e-40 162.2
Cmo19g01150 . 18 168 G2-like Transcription Factor Family AT3G24120 58.3 7.9e-40 161.8
Cmo02g01694 . 4 151 G2-like Transcription Factor Family AT3G24120 54.3 1.1e-38 157.9
Cmo19g00220 . 4 152 G2-like Transcription Factor Family AT3G24120 52.5 1.3e-37 154.5
Cmo07g00367 . 31 149 G2-like Transcription Factor Family AT3G24120 68.0 2.8e-37 153.3
Cmo05g00868 . 7 200 G2-like Transcription Factor Family AT1G69580 50.5 1.2e-36 151.4
Cmo19g01150 . 1 379 G2-like Transcription Factor Family AT1G79430 53.6 3.0e-86 316.2
Cmo10g01273 . 1 376 G2-like Transcription Factor Family AT1G79430 50.9 6.7e-78 288.5
Cmo20g00312 . 1 366 G2-like Transcription Factor Family AT1G79430 53.0 1.5e-77 287.3
Cmo06g01253 CST 26 204 G2-like Transcription Factor Family AT1G79430 55.7 2.1e-39 160.6
Cmo14g01946 CST 29 193 G2-like Transcription Factor Family AT1G79430 59.4 7.5e-37 152.1
Cmo03g00639 . 84 327 G2-like Transcription Factor Family AT2G01060 59.7 1.7e-53 206.8
Cmo07g00368 . 66 323 G2-like Transcription Factor Family AT2G01060 56.9 1.9e-52 203.4
Cmo07g01147 . 1 299 G2-like Transcription Factor Family AT3G10760 62.5 2.7e-89 326.2
Cmo03g01093 . 1 304 G2-like Transcription Factor Family AT3G10760 60.2 7.4e-87 318.2
Cmo06g00028 . 1 285 G2-like Transcription Factor Family AT3G10760 59.2 1.1e-85 314.3
Cmo14g00500 . 1 277 G2-like Transcription Factor Family AT3G10760 58.6 1.5e-79 293.9
Cmo07g01147 . 1 204 G2-like Transcription Factor Family AT2G40970 62.0 7.5e-60 228.0
Cmo14g00500 . 1 193 G2-like Transcription Factor Family AT2G40970 59.4 1.4e-58 223.8
Cmo03g01093 . 1 204 G2-like Transcription Factor Family AT2G40970 58.5 5.4e-58 221.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004323 2 1 3 2 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 2 1 1 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9679 PF00249 Myb_DNA-binding 1.50E-06 CL0123 Cmo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo04g02159 Cmo_Chr04 FPKM 6.376517 6.686089 3.347432 3.799396 2.717665 2.80995 2.57217 3.831997 4.150412 3.781641
Cmo04g02159 Cmo_Chr04 FPKM 6.794966 7.166369 3.587888 4.0333 2.861563 3.011796 2.756936 4.126045 4.442178 4.056641