Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g02159 ATGATTTTCTCCCACAAAATGCAAGAAATTGCATTCAAAATGGGCTTCACTCTCTCCGATTTCGCCCACACTTTAGAACAAGAGCGCCGTAAAGTCCTCATGTTCCAGCGCGAGCTCCCTCTCTGTCTGGAGATTGTTACTCGCGCCATTGATTGTTGCAGGCATCACGTGTCGGAGACCACGACGGAGAATCGTCTATCGGAGTGTTCGGAGCAGACTTCCAGTGACGTGGGTCCGGTTCTTGAGGAGTTTATTCCGATTAATAGATATGGAGTTTCTGATTCTGAACAACAACAACAACGACAACTGCCCTGTGAAACTCAGACGGAGAACACTGATGACTCTGATCGAAATAATTTGAATTTGTGTCCGTCGGATTGGCTCAGATCTGCCCAGCTTTGGAAGGATCCTTCTGCCTTGAATCAGGACCTGCCGGAGAAGACGGCTGTTGTTGAGGTCAAGAGTAATGGCGGAGCTTTCCGACCATTTCAGAAGGAGAAAACCGGTGGTGGAGGAACATCATCGACTTCGGCTCCGGCTGCGACGAGCTCCACTGCGGAAATGGGGTCCGGTGGAAGTAATCGACGGGAAGTAAAAGAAGCGCAGAATCAGAGGAAACAAAGACGGTGCTGGTCACCGGAGCTACACCGGCGATTCCTTCATGCTCTTCAACAGCTCGGAGGTTCCCATGTGGCGACGCCGAAGCAAATCAGAGAGTTGATGAAGGTGGATGGTCTTACCAACGACGAAGTGAAAAGTCATTTACAGAAATATCGTCTACACACGAGACGCCCAAGTACAACAATGCACCACGACGACACCGCCCAGACGCCGCAGTTCCTGGTTGTGGGCGGTATATGGGTACCGGCTGCGGAGTACGCCACCACATCCACCGGAGAAGCAGTGAGAGCAGCCACCACGAACGGAATTTACGCACCGGTGGTTAGGACGGCGAGTACAGTGGGGAAGGCGAAGGCGAAGGTTATAGTATCTGGGGGTGCGGCGGAGTGTAATTCTGCTACTACATCGTCCTCCACACATACGTCATCAGTTTCACCTGCTTGA 1065 51.83 MIFSHKMQEIAFKMGFTLSDFAHTLEQERRKVLMFQRELPLCLEIVTRAIDCCRHHVSETTTENRLSECSEQTSSDVGPVLEEFIPINRYGVSDSEQQQQRQLPCETQTENTDDSDRNNLNLCPSDWLRSAQLWKDPSALNQDLPEKTAVVEVKSNGGAFRPFQKEKTGGGGTSSTSAPAATSSTAEMGSGGSNRREVKEAQNQRKQRRCWSPELHRRFLHALQQLGGSHVATPKQIRELMKVDGLTNDEVKSHLQKYRLHTRRPSTTMHHDDTAQTPQFLVVGGIWVPAAEYATTSTGEAVRAATTNGIYAPVVRTASTVGKAKAKVIVSGGAAECNSATTSSSTHTSSVSPA 354
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 15345324 15347445 - CmoCh04G021590.1 Cmo04g02159 381134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g02159 354 MobiDBLite consensus disorder prediction 91 121 - -
Cmo04g02159 354 Pfam Myb-like DNA-binding domain 208 259 IPR001005 -
Cmo04g02159 354 Gene3D - 205 263 - -
Cmo04g02159 354 PANTHER TRANSCRIPTION FACTOR HHO2 18 350 - -
Cmo04g02159 354 MobiDBLite consensus disorder prediction 158 209 - -
Cmo04g02159 354 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 203 263 IPR017930 -
Cmo04g02159 354 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 18 350 IPR044787 GO:0003700|GO:0006355
Cmo04g02159 354 SUPERFAMILY Homeodomain-like 204 264 IPR009057 -
Cmo04g02159 354 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 206 261 IPR006447 GO:0003677
Cmo04g02159 354 MobiDBLite consensus disorder prediction 168 191 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g02159 Cmo-Chr4:15345324 Cmo10g00628 Cmo-Chr10:2842287 1.62E-51 dispersed
Cmo15g00948 Cmo-Chr15:4883149 Cmo04g02159 Cmo-Chr4:15345324 6.42E-162 wgd
Cmo18g01059 Cmo-Chr18:11226784 Cmo04g02159 Cmo-Chr4:15345324 3.67E-83 wgd
Cmo04g01592 Cmo-Chr4:8112425 Cmo04g02159 Cmo-Chr4:15345324 3.51E-91 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9679 PF00249 Myb_DNA-binding 1.50E-06 CL0123 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g02159 - - cpep:111786881 483.796