Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g02162 ATGACAGATACAGGTGAAAATCAGCAGCCTGAACAAGTCTGTAGCTTCTTCAAAAAACCCACAAAGAACAAAAACATTAGAAAGCGGACGGTTGATGAAGATGAAGAGGAGTCTAAAAGTACTGAGACTTCGGTGCTGCAAAATCAGAAAAAAGCCCCCAAGACAGATAGCAAACTTTATTTTTCTTCTGGGCCTTCTAAAAGTAACTTGACTAATGAGTCAAATGTGGAATCTGATAAACCAATTTTCCAATTTGAGTCTTCAAAAGAAATTCAAGTTCACCATGATAGCAGAGCCACTGCAACATTAGAAACAGAGACTGATTTCTCAAGAGATGCACGAGCCATCCGTGAGAGGGTTTTGAAGCAAGCTGAGGAGGCTTTAAAGGGCAAAGGCAAGAGTTCTGGGGGTGAGAAGTTGTATAAAGGGGTCAATGCGTATGTGGATTACAAGGCTGGCTTTAGAAGGGAACATACAATTTCAAGTGAAAAAGCTGGTGGAGCTCATGGGCCGCTTAGAGCTTCTGCTCATATAAGAGCTTCTGCGAGATTTGATTATCAGCCTGATATTTGCAAGGATTACAAGGAGACTGGTTACTGTGGTTATGGAGATGCATGCAAGTTTATGCATGACCGAGGAGATTACAAGTCTGGGTGGCAGTTGGAAAAGGAATGGGAGGAAGTGGAAAAGGCAAGGAAGAGAAAACTAGCCATGAAATCTGATGACGGTGATGAGGATGCTGCAGAACAGAGTGATGAAGATGAGGAAGATGCCTTGCCCTTTGCTTGTTTTATTTGTCGTGAGCCATTTGTGGATCCTGTAGTGACCAAATGCAAACATTACTTCTGTGAGCATTGTGCACTAAAGCACCATGCAAAGAATAAGAAATGCTTCGTTTGCAATCAGCCTACACTTGGAATCTTTAACACGGCTCATGAGATAAAGAAGAAGATGGCAGAGAGTAAGTTGTACTATGGGGATCATAATAATTTGGTGGTGTATACTGAGATTTGA 1014 41.81 MTDTGENQQPEQVCSFFKKPTKNKNIRKRTVDEDEEESKSTETSVLQNQKKAPKTDSKLYFSSGPSKSNLTNESNVESDKPIFQFESSKEIQVHHDSRATATLETETDFSRDARAIRERVLKQAEEALKGKGKSSGGEKLYKGVNAYVDYKAGFRREHTISSEKAGGAHGPLRASAHIRASARFDYQPDICKDYKETGYCGYGDACKFMHDRGDYKSGWQLEKEWEEVEKARKRKLAMKSDDGDEDAAEQSDEDEEDALPFACFICREPFVDPVVTKCKHYFCEHCALKHHAKNKKCFVCNQPTLGIFNTAHEIKKKMAESKLYYGDHNNLVVYTEI 337
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 15495704 15499111 + CmoCh04G021620.1 Cmo04g02162 381137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g02162 337 PANTHER ZINC FINGER PROTEIN 183 1 322 IPR039971 -
Cmo04g02162 337 Pfam Zinc finger, C3HC4 type (RING finger) 262 304 - -
Cmo04g02162 337 SUPERFAMILY RING/U-box 262 306 - -
Cmo04g02162 337 CDD RING-HC_RNF113A_B 261 301 - -
Cmo04g02162 337 SMART ring_2 263 300 IPR001841 -
Cmo04g02162 337 MobiDBLite consensus disorder prediction 42 82 - -
Cmo04g02162 337 ProSitePatterns Zinc finger RING-type signature. 278 287 IPR017907 -
Cmo04g02162 337 SMART c3hfinal6 185 212 IPR000571 GO:0046872
Cmo04g02162 337 MobiDBLite consensus disorder prediction 1 19 - -
Cmo04g02162 337 MobiDBLite consensus disorder prediction 1 83 - -
Cmo04g02162 337 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 261 320 IPR013083 -
Cmo04g02162 337 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 186 211 IPR000571 GO:0046872
Cmo04g02162 337 Gene3D - 183 217 - -
Cmo04g02162 337 SUPERFAMILY CCCH zinc finger 184 216 IPR036855 GO:0046872
Cmo04g02162 337 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 1-LIKE 1 322 - -
Cmo04g02162 337 ProSiteProfiles Zinc finger RING-type profile. 263 301 IPR001841 -
Cmo04g02162 337 ProSiteProfiles Zinc finger C3H1-type profile. 185 213 IPR000571 GO:0046872
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9680 PF13920 zf-C3HC4_3 5.90E-09 CL0229 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g02162 K13127 - csv:101221334 591.267