Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cmo04g02170 | ATGAAGACGGGTTCAAAGTCGGAAGGACCTTCCGCTCCAGCGCCTCGACGGGACCCCTATGAGGTTCTAAGCGTGTCCAGGGATTCCACTGATCAGGACATCAAGACTGCTTATAGGAAGCTTGCTCTCAAATATCATCCAGACAAGAATGGAAGTAACCCTGAAGCTTCAGAACTTTTTAAGGAGGTCGCATATTCTTATAGCATCCTATCTGATCCAGAGAAGAGAAGGCAATATGACAGTGCTGGCTTTGAGGTGCATGTCTCCTTGTCACCATCAACTTGTTATGATGCTTTGCCTTATGTGGCTTACACATATTTCCATCCCATACACAGTATTTTATTTTTCCCAATCAAAGCTTTCTCTGAGATTCAAATTGAGGTCAAGATTGTTAATTCACTCTTCCATCGTGCCCTTGATGCTAGTGGCATGGATATGGAAATAGACTTGTCCAATCTTGGAACTGTCAATACCATGTTTGCAGCTTTGTTCAGTAAGCTGGGTGTTCCTATTAAGACTACAGTTTCTGCTAATGTTCTTGAAGAAGCTCTGAATGGAACTGTTACAGTCAGGCCTCTTCCTATTGGAACATCAGTTAGTGGCAAGGTGGATAAGCAATGCGCTCACTTTTTTGGTGTGACAATTAACGAAGAGCAAGCTCAGGCAGGAATTGCTATAAGGGTTACTTCAACTTCACAAAGTAAATTCAAGGTTAACTTTCATCCAAATGGGGCTCTTCTGATATGTGCAAATTTTCTTGATTCTTGGTCTTGTTCTCATGTGCATCCGCTTTGTAAGCCGTTTCATCTGCTCTTTTTTGAACATGATGTCAGTGGCGGTTATAGTTTGGCCATACAGGAAGATAGTGAGAAGACTGGGAAAGTAACGTCTGCTGGGTTGTACTTTTTGCATTTTCAAGTGTACAGGATGGATTCCACTGTCAATGCGGTACTTCAAGTTCCAATTATGTGTAGTTTACTGGTGTTTCCTATACTTTTGACCAGAACGTTGGCAATGGCTAAGGACCCTGAGGCTGCTTTCTTCAAGAGTTTGGAAGGTCTTCAGCCTTGTGAGGTCTCAGAGCTAAAGGCTGGCACCCATATTTTTGCTGTTTATGGTCTTAACTTAGATTTCTTAATTCATCTTTCAAATTTTGTTCCGTTTCGTGTTAACTGCTTTTTTAATATATTCCGTGTTTATCCAGGAGATAACTTTTTCAAGACTGCTGCATATACTATTGAGGCACTATGTACAAAAGATTATGCAGAGACAACAGAAAAACTGAAAGATGTCGAAGCTCAAATTTTGAGAAAGAGAAATGAGCTACGGCAATTCGAGACAGAATACCGGAAGGTGTTGAAATATTCTTTGCCTTCCCTCCCTCCTCTCTCTCACACTATTACTTATTTTTTATTAATTGCTTTGGCATTAGCACGCTTCCAAGAAGTGACAAAAAGATACAATGAGGAAAAACAGTCTGTGGACGAGCTTCTTAAACAACGAGATGGCATACACGCGTCATTCACCATCACAAAAGCACCAAATCCTATCGGAGCTGGTGTTACGAGTAATGGAAGTAGTAGTAAATCTACTGGCGACAGTTCGAAGGTTGAGAATCAAGGAGACGATGGGACCTCAGACGAAAAAGAAAGATCTTTCAAAAAGAGATGGTTCAATATTCCTCGAGGTTCAGACAAAAAGTTGGGTTGA | 1710 | 41.17 | MKTGSKSEGPSAPAPRRDPYEVLSVSRDSTDQDIKTAYRKLALKYHPDKNGSNPEASELFKEVAYSYSILSDPEKRRQYDSAGFEVHVSLSPSTCYDALPYVAYTYFHPIHSILFFPIKAFSEIQIEVKIVNSLFHRALDASGMDMEIDLSNLGTVNTMFAALFSKLGVPIKTTVSANVLEEALNGTVTVRPLPIGTSVSGKVDKQCAHFFGVTINEEQAQAGIAIRVTSTSQSKFKVNFHPNGALLICANFLDSWSCSHVHPLCKPFHLLFFEHDVSGGYSLAIQEDSEKTGKVTSAGLYFLHFQVYRMDSTVNAVLQVPIMCSLLVFPILLTRTLAMAKDPEAAFFKSLEGLQPCEVSELKAGTHIFAVYGLNLDFLIHLSNFVPFRVNCFFNIFRVYPGDNFFKTAAYTIEALCTKDYAETTEKLKDVEAQILRKRNELRQFETEYRKVLKYSLPSLPPLSHTITYFLLIALALARFQEVTKRYNEEKQSVDELLKQRDGIHASFTITKAPNPIGAGVTSNGSSSKSTGDSSKVENQGDDGTSDEKERSFKKRWFNIPRGSDKKLG | 569 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 15800030 | 15806032 | - | CmoCh04G021700.1 | Cmo04g02170 | 381145 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cmo04g02170 | 569 | PANTHER | CHAPERONE PROTEIN DNAJ 15-LIKE | 395 | 454 | - | - | |
| Cmo04g02170 | 569 | CDD | DnaJ | 18 | 72 | IPR001623 | - | |
| Cmo04g02170 | 569 | SMART | dnaj_3 | 17 | 75 | IPR001623 | - | |
| Cmo04g02170 | 569 | PANTHER | CHAPERONE PROTEIN DNAJ 15-LIKE | 268 | 317 | - | - | |
| Cmo04g02170 | 569 | PANTHER | CHAPERONE PROTEIN DNAJ 15-LIKE | 3 | 87 | - | - | |
| Cmo04g02170 | 569 | Coils | Coil | 480 | 500 | - | - | |
| Cmo04g02170 | 569 | Pfam | DnaJ domain | 18 | 80 | IPR001623 | - | |
| Cmo04g02170 | 569 | PRINTS | DnaJ domain signature | 20 | 38 | IPR001623 | - | |
| Cmo04g02170 | 569 | PRINTS | DnaJ domain signature | 38 | 53 | IPR001623 | - | |
| Cmo04g02170 | 569 | PRINTS | DnaJ domain signature | 75 | 94 | IPR001623 | - | |
| Cmo04g02170 | 569 | PRINTS | DnaJ domain signature | 55 | 75 | IPR001623 | - | |
| Cmo04g02170 | 569 | ProSitePatterns | Nt-dnaJ domain signature. | 60 | 79 | IPR018253 | - | |
| Cmo04g02170 | 569 | Gene3D | DnaJ domain | 4 | 93 | IPR036869 | - | |
| Cmo04g02170 | 569 | MobiDBLite | consensus disorder prediction | 509 | 569 | - | - | |
| Cmo04g02170 | 569 | PANTHER | DNAJ DOMAIN (PROKARYOTIC HEAT SHOCK PROTEIN) | 268 | 317 | - | - | |
| Cmo04g02170 | 569 | Coils | Coil | 421 | 448 | - | - | |
| Cmo04g02170 | 569 | MobiDBLite | consensus disorder prediction | 516 | 539 | - | - | |
| Cmo04g02170 | 569 | SUPERFAMILY | Chaperone J-domain | 15 | 111 | IPR036869 | - | |
| Cmo04g02170 | 569 | PANTHER | DNAJ DOMAIN (PROKARYOTIC HEAT SHOCK PROTEIN) | 137 | 241 | - | - | |
| Cmo04g02170 | 569 | PANTHER | DNAJ DOMAIN (PROKARYOTIC HEAT SHOCK PROTEIN) | 3 | 87 | - | - | |
| Cmo04g02170 | 569 | PANTHER | CHAPERONE PROTEIN DNAJ 15-LIKE | 137 | 241 | - | - | |
| Cmo04g02170 | 569 | ProSiteProfiles | dnaJ domain profile. | 18 | 83 | IPR001623 | - | |
| Cmo04g02170 | 569 | PANTHER | DNAJ DOMAIN (PROKARYOTIC HEAT SHOCK PROTEIN) | 336 | 376 | - | - | |
| Cmo04g02170 | 569 | PANTHER | DNAJ DOMAIN (PROKARYOTIC HEAT SHOCK PROTEIN) | 395 | 454 | - | - | |
| Cmo04g02170 | 569 | PANTHER | CHAPERONE PROTEIN DNAJ 15-LIKE | 336 | 376 | - | - | |
| Cmo04g02170 | 569 | PANTHER | DNAJ DOMAIN (PROKARYOTIC HEAT SHOCK PROTEIN) | 476 | 567 | - | - | |
| Cmo04g02170 | 569 | MobiDBLite | consensus disorder prediction | 540 | 569 | - | - | |
| Cmo04g02170 | 569 | PANTHER | CHAPERONE PROTEIN DNAJ 15-LIKE | 476 | 567 | - | - | |
| Cmo04g02170 | 569 | MobiDBLite | consensus disorder prediction | 1 | 29 | - | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cmo04g01569 | Cmo04g02170 | CCT | |
| Cmo04g02170 | Cmo18g01016 | CCT | |
| Cmo04g02170 | Cmo15g00961 | CST |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cmo04g02170 | Cmo-Chr4:15800030 | Cmo15g00961 | Cmo-Chr15:5006819 | 0 | dispersed | |
| Cmo04g02166 | Cmo-Chr4:15757886 | Cmo04g02170 | Cmo-Chr4:15800030 | 4.14E-28 | proximal | |
| Cmo18g01016 | Cmo-Chr18:10990716 | Cmo04g02170 | Cmo-Chr4:15800030 | 1.22E-11 | wgd | |
| Cmo04g01569 | Cmo-Chr4:8025863 | Cmo04g02170 | Cmo-Chr4:15800030 | 0 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cmo04g02170 | - | - | csv:101216672 | 661.759 |