Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g02173 ATGCTCTGTTTCTCCTTCCAAAATGTGGCTCTGTTTCTCCTTCTTCTATGCTCCTCCTCTCATTGTCTTCTTGTAACTTCTTTGAATCATGAAGGGTTTATGCTTTTGTCATTTAAGCGCTCCATTTTCGAAGACCCACATGGGGCTTTGACCGATTGGGATTCCTCTGATGAAACCCCTTGTTCTTGGAATGGCGTTGGCTGTATACACCAAATTGTTGTTTCCCTTACGTTTCCTAAGAACAATCTATATGGGTTTCTTCCTTCTTCTCTCGGGGCTCTTTCTGGCCTCCGCCATGTCAATTTCAGGAACAATAGGCTGTTTGGGAGCTTGCCTTCACCGCTCTTTTCCGCTCAACGCCTACAAAGCTTGGTTCTCTATGGGAATTCCTTTTCTGGGTCTGTTCCAAATGGGATTGGTAAGCTTAAATTCCTTCAAACTCTGGATTTATCTCAAAATTTCTTTAATGGCTCCTTACCCACTTCGATTCTTCAATGCAAGAGGCTTAAAACCCTTGATCTTAGTCAGAATAACTTCACTGGTTCACTGCCTCATGGGTTTGGAACTAGCTTGAGTTCTTTGGAGAAACTTGATCTTTCATTCAACAGCTTTGATGGTTCTGTTCCTAATGATTTGGGGAATTTGGGTAGCTTACAAGGAACTCTTGACTTGTCTCATAATCATTTTTCTGGTTCAATCCCTTCTAGCCTTGGGAACTTACCTGAAAAGGTGTACATTGATCTCAGCCACAACAATTTGAATGGTCCAATACCCCAAAATGGTGCTCTTATGAACAGAGGACCCACTGCTTTTATTGGGAATCCTGGGCTCTGTGGCTCCCCATTGAAGAACACATGTTCTTCACCATCATTGCTGCCATTTCTCCCAAGGACTTATGGTGAAAACGCTAAGAAGGCTAGTGGATTAAGTAAGAGTGCTGTGATTGCTATAGTACTTGGTGATATGATTGGCATATGTTTAGTTGGGTTATTGATCTCATATTGTTATTCTAAACTGTTCAATCCAAGAAACAGCAGAGAATGTTTATGTTTCAGGAAGGATGAATCCGAGACGGTTTCACAGAATGTCGAGCAGCTCGATCTCGTGGCATTGGATGAACAAGTTGAGTTTGATCTTGATGAACTTCTGAAAGCATCAGCATTCATTCTTAGCAAAAGTGGGATTGGGATAATGTATAAAGTGGTGCTCGACAATGGCGTTACGTTGGCCGTGCGTCGATTAGGCGAAGGCGGTTCTCAAAGGCTCAAAGAGTTTCAAACAGAAGTAGAAGCCATAGCAAAGCTAAGACATCCTAATCTTGTCACTCTTAGAGCCTATTACTGGTCTGTTGATGAGAAGCTGCTCATTTATGAGTTCATACCAAATCAAAACCTGGCCACTGCCATTCATGGAAAGCGAGAAATGGAAGCTTTCACGCCGTTATCTTGGTCTGTAAGGCTAAAGATCATGAAAGGAATTGCTAAAGGAATGGTTTATCTCCATGAATTCAGCCCCAAGAAGTATGTTCATGGAGATTTGAAGCCCAACAACATACTTCTCAGTGAGAACATGGAAGCCAAAGTTTCAGACTTTGGCTTAGCTCGACTTGCCAACATAGCTGGAGTAACCCCGACCGTACAATCGAATCGAATGGCATCGAATAAACCATTAGATCCAAAGCCATTGAAAACCGTAACGTCCGAGATCATTTGCAGTTCATCTTCCAACACTAGAACCTATTATCAAGCTCCTGAATCACTCAAAGTCTTGAAACCATCTCAAAAATGGGATGTTTACTCATATGGTATGATCTTACTTGAAATGATCACTGGAAGATTCCCATTAATCCAAGTGAGTTCTTCCTCTGAAATGGATCTTGTTCATTGGATCCAACTCTGCATTGAAGAACAAAAGCCAATTTCAGAAGTCATTGATCCATATCTAGTTCGAGATGCAGATAACGAAGAAGAGATCGTCTCGGTACTAAAACTTGCAATGGCTTGTGTTCATGGAATCCCTGAAAGGAGACCTTCCATGAGACACATCTCCGATGTGCTCGAAAGGGTATCGTTTGAACCGAGGAATTAA 2088 41.95 MLCFSFQNVALFLLLLCSSSHCLLVTSLNHEGFMLLSFKRSIFEDPHGALTDWDSSDETPCSWNGVGCIHQIVVSLTFPKNNLYGFLPSSLGALSGLRHVNFRNNRLFGSLPSPLFSAQRLQSLVLYGNSFSGSVPNGIGKLKFLQTLDLSQNFFNGSLPTSILQCKRLKTLDLSQNNFTGSLPHGFGTSLSSLEKLDLSFNSFDGSVPNDLGNLGSLQGTLDLSHNHFSGSIPSSLGNLPEKVYIDLSHNNLNGPIPQNGALMNRGPTAFIGNPGLCGSPLKNTCSSPSLLPFLPRTYGENAKKASGLSKSAVIAIVLGDMIGICLVGLLISYCYSKLFNPRNSRECLCFRKDESETVSQNVEQLDLVALDEQVEFDLDELLKASAFILSKSGIGIMYKVVLDNGVTLAVRRLGEGGSQRLKEFQTEVEAIAKLRHPNLVTLRAYYWSVDEKLLIYEFIPNQNLATAIHGKREMEAFTPLSWSVRLKIMKGIAKGMVYLHEFSPKKYVHGDLKPNNILLSENMEAKVSDFGLARLANIAGVTPTVQSNRMASNKPLDPKPLKTVTSEIICSSSSNTRTYYQAPESLKVLKPSQKWDVYSYGMILLEMITGRFPLIQVSSSSEMDLVHWIQLCIEEQKPISEVIDPYLVRDADNEEEIVSVLKLAMACVHGIPERRPSMRHISDVLERVSFEPRN 695
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 15831220 15833984 + CmoCh04G021730.1 Cmo04g02173 381148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g02173 695 Gene3D Ribonuclease Inhibitor 32 137 IPR032675 -
Cmo04g02173 695 Gene3D Ribonuclease Inhibitor 138 190 IPR032675 -
Cmo04g02173 695 Gene3D Phosphorylase Kinase; domain 1 351 459 - -
Cmo04g02173 695 ProSiteProfiles Protein kinase domain profile. 384 691 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo04g02173 695 ProSitePatterns Serine/Threonine protein kinases active-site signature. 508 520 IPR008271 GO:0004672|GO:0006468
Cmo04g02173 695 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 10 690 - -
Cmo04g02173 695 SMART LRR_typ_2 191 214 IPR003591 -
Cmo04g02173 695 SMART LRR_typ_2 215 240 IPR003591 -
Cmo04g02173 695 SMART LRR_typ_2 142 166 IPR003591 -
Cmo04g02173 695 SMART LRR_typ_2 94 118 IPR003591 -
Cmo04g02173 695 Pfam Leucine rich repeat N-terminal domain 29 68 IPR013210 -
Cmo04g02173 695 Gene3D Ribonuclease Inhibitor 191 284 IPR032675 -
Cmo04g02173 695 SUPERFAMILY Protein kinase-like (PK-like) 390 687 IPR011009 -
Cmo04g02173 695 Pfam Leucine rich repeat 168 229 IPR001611 GO:0005515
Cmo04g02173 695 SMART serkin_6 388 691 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo04g02173 695 PANTHER RECEPTOR PROTEIN KINASE-LIKE PROTEIN ZAR1 10 690 - -
Cmo04g02173 695 SUPERFAMILY L domain-like 31 283 - -
Cmo04g02173 695 Pfam Protein kinase domain 396 682 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo04g02173 695 Gene3D Transferase(Phosphotransferase) domain 1 460 692 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo04g02173 Cmo18g01006 CCT
Cmo04g01562 Cmo04g02173 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g02173 Cmo-Chr4:15831220 Cmo18g00696 Cmo-Chr18:8827292 0 dispersed
Cmo18g01006 Cmo-Chr18:10958254 Cmo04g02173 Cmo-Chr4:15831220 0 wgd
Cmo04g01562 Cmo-Chr4:7987916 Cmo04g02173 Cmo-Chr4:15831220 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74294 PF00069 Pkinase 1.00E-32 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g02173 - - csv:101203259 1104.35