Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g02205 ATGGCGGCCTCCGCTCAACAGACTCCTTTCTTACGCTCCCGTCAGCCCTCCAACACTGGCGGCTCTACTTCCCCCATCGGCCCCCTCGCCGTTCTCTTGGGCCGTGCCACTGGCCGCCGTGGAACTTCTATGGTAGTACGAGAGACGGCGGCGCGTGAACTTGAAGAGCGCCGCATCGATTGGGGCTACTCCAAGCCGGTTGTGGCGGTTGACATTGCGTGGAATTTGGCTTTCGTTTTCGTTTCGTTGGGTGTGCTTATTCACTCGGTCGATGAAAAACCCAATACGCCAATTCGGCTTTGGATTTTAGTTTATGTGGCTCAGTGTTTGGTGCACTCTGTGCTTGTGTGGTTAGAGTTTAGAAGGAGGAATGCGAGGAGGGCTATGGATATGGAGACGCCGCAACACCCGCAACCTGATATTGACGGATATTTTTCTAATGAAAGCAATGACGAAGATGGTAGCCCGAGGAATCTGTCCGGTGTTGCCAAAAGATGTGAGACAGTGAACACCTTGGTATCGTTAATTTGGTGGTTACTTGGCTTTTATTGGGTCATGGCTGGTGGTAACCTCCTCCTGCAGAATGCTCCATCTTTATACTGGTATGATTTTGAACCGTCGCGATGCTGGCTGCATATCCTTCTTATGCTGGCTGTCGTATTTCTGGCATTTGATGTGTTCTTTGCCATCTTTTGTGTTGTTTTGGCATGTTTGATTGGAATAGCTCTCTGTTGCTGCTTGCCTTGCATTATAGCTATTCTTTATGCTGTTGCAGGCCAGGTAAGAGGAAATCCCGGTTTTCATGGTTGCTTCAGAGATGAAGGTGCAACTGATGCAGATTTAAGTACTCTTTCTAAGTATAGATATCAAGTATCCAACAATCCTTCTCCCGGGGACGGGTTGATGGTTCCAATGGAAACAAGCAGCCGATACTTGACGACTGAACATGTTCTATTACGAGAGGATGCGGAGTGTTGTATATGTCTTAGTTCATATGAGGACGGAGTCGAGCTTCATGCTCTTCCCTGTAATCACCATTTTCATTACGCGTGTAGCACAAAATGGCTGAAGATGAATGCGACCTGCCCTCTGTGCAAGTACAACATATTAAAAAACTGTGAACCCGTGTAA 1131 47.92 MAASAQQTPFLRSRQPSNTGGSTSPIGPLAVLLGRATGRRGTSMVVRETAARELEERRIDWGYSKPVVAVDIAWNLAFVFVSLGVLIHSVDEKPNTPIRLWILVYVAQCLVHSVLVWLEFRRRNARRAMDMETPQHPQPDIDGYFSNESNDEDGSPRNLSGVAKRCETVNTLVSLIWWLLGFYWVMAGGNLLLQNAPSLYWYDFEPSRCWLHILLMLAVVFLAFDVFFAIFCVVLACLIGIALCCCLPCIIAILYAVAGQVRGNPGFHGCFRDEGATDADLSTLSKYRYQVSNNPSPGDGLMVPMETSSRYLTTEHVLLREDAECCICLSSYEDGVELHALPCNHHFHYACSTKWLKMNATCPLCKYNILKNCEPV 376
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 16435498 16441507 + CmoCh04G022050.1 Cmo04g02205 381180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g02205 376 MobiDBLite consensus disorder prediction 1 25 - -
Cmo04g02205 376 MobiDBLite consensus disorder prediction 132 158 - -
Cmo04g02205 376 MobiDBLite consensus disorder prediction 140 156 - -
Cmo04g02205 376 SMART ring_2 325 365 IPR001841 -
Cmo04g02205 376 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 305 372 IPR013083 -
Cmo04g02205 376 PANTHER TARGET OF ERK KINASE MPK-1 5 372 - -
Cmo04g02205 376 SUPERFAMILY RING/U-box 311 371 - -
Cmo04g02205 376 Pfam Ring finger domain 324 366 IPR001841 -
Cmo04g02205 376 MobiDBLite consensus disorder prediction 1 28 - -
Cmo04g02205 376 ProSiteProfiles Zinc finger RING-type profile. 325 366 IPR001841 -
Cmo04g02205 376 PANTHER E3 UBIQUITIN PROTEIN LIGASE RIE1-LIKE 5 372 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g02205 Cmo-Chr4:16435498 Cmo14g02075 Cmo-Chr14:15111582 3.18E-100 dispersed
Cmo11g01410 Cmo-Chr11:9904024 Cmo04g02205 Cmo-Chr4:16435498 4.27E-10 dispersed
Cmo15g01028 Cmo-Chr15:6128617 Cmo04g02205 Cmo-Chr4:16435498 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g02205 - K13148 cmo:103504433 553.903