Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g02213 ATGGGTGATGTGAAGGACAAGGTTAAGGGCTTCATGAAACGCTTCAATAATCCCTTGTCCTCATCTTCTTCTACCAGTTTCAAGGGCCAGGGAAGAGTGTTAGGATCCTCCTCTTCCGGGTCGACCACTTCTTTGCCTACCCGCCCATTGCAGAATCCCATTTCAAACCCGAATCTGGCCAAGCCCCCGGTAGCGAATTCAATTTCCGCGGCTCCGACCCGGCCACATCTCTCGATTAAATCGACCCCAGAACGTTCCCCGGCTGATGGATTTGACCCATTTGACTCGTTTATAACATCTGGGAAAAAATCTGGAAATGGGTATTCGTTAAATGTGTTCGAATGTCCGATTTGTGGCCAAAATTACAGGTCGGAAGAAGAGGTTTCGGTGCACGTAGATAGCTGTGTCGATGATAATACAGCCAGGAGACCACCAGATCTGCTGCTCACAAATGATGCAGAATCCCCGAGTGAATTGGAGGGTTGTCTTGGCATTTTCTTGTCAGGTAAGCCCTCACAAGGTTCACTGAAAATTATTCTTACGCTTTTGAGGAACATAATTCGGGAACCAGAGAATTCAAAGTTTAGGAAGATTCGTCTGAGTAATCCCAAAATTAAGGAAGCAATTGGCGAGGCTGTCGGGGGAGTGGAATTGTTGGAATTTGTAGGTTTTAAATTGCAAGAACAAGATGGTGAAATGTGGGCAACCATGGAAGTTCCAACAGAGGAACAAATTAACATACTAAGCAAGGTAATAGATTCCATCGATCAACCAAAGCTTGATGAACAGGAAAAGAAAGGCAGCAGCACTGCATCCACTGCATCCACTGATCAACTGATTGAACCAAAGAAGGTTGACAGACAGGTATGGTTAACTGAGAAATTTATAACTCGGGTATTCTTTGCAATCCCTGAAAACGTTGCAGCAAACATCGAGCTACCAGACTCATTTTACAAACTCTCTGTTGAAGAGGTTAAAAGAGAAGCTGTGATGAGGAAGCAAAAGATTGCTGAATCTCAGCTTTTGGTACCCAAATCATACAAGGAAAAGCAAGCCAAAGCTGCTCGGAGAAAGTACAATAGAACAGTGATCAGAATTCAGTTTCCTGATGGTGTGGTACTTCAAGGGATTTTTTCTCCTTGGGAACCAACAAGTGCTCTATATGAGTTTGTAAGCACAGCACTGAAAGAACCAAGTTTGGAGTTCGAGTTGATACAACCTGTCGGTGTTAAACGACGTGCAATCGCACACTTTCCAGCAGTAGGAGAGAAAGCTAAAACACTAGATGATCTGGAGTTGGTTCCCTCAGCTCTTGTCAAGTTTAGACCCATTGAAACAGATGCTGTTGTGTTCACTGGTTTGTGTAATGAACTCCTTGAGATCATTGAACCACTCGTTAGCGGTTCAGCGGTAGCTCCTCCTGCACAAGGTTAA 1434 44.35 MGDVKDKVKGFMKRFNNPLSSSSSTSFKGQGRVLGSSSSGSTTSLPTRPLQNPISNPNLAKPPVANSISAAPTRPHLSIKSTPERSPADGFDPFDSFITSGKKSGNGYSLNVFECPICGQNYRSEEEVSVHVDSCVDDNTARRPPDLLLTNDAESPSELEGCLGIFLSGKPSQGSLKIILTLLRNIIREPENSKFRKIRLSNPKIKEAIGEAVGGVELLEFVGFKLQEQDGEMWATMEVPTEEQINILSKVIDSIDQPKLDEQEKKGSSTASTASTDQLIEPKKVDRQVWLTEKFITRVFFAIPENVAANIELPDSFYKLSVEEVKREAVMRKQKIAESQLLVPKSYKEKQAKAARRKYNRTVIRIQFPDGVVLQGIFSPWEPTSALYEFVSTALKEPSLEFELIQPVGVKRRAIAHFPAVGEKAKTLDDLELVPSALVKFRPIETDAVVFTGLCNELLEIIEPLVSGSAVAPPAQG 477
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 16490883 16493646 + CmoCh04G022130.1 Cmo04g02213 381188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g02213 477 SUPERFAMILY PUG domain-like 172 236 IPR036339 -
Cmo04g02213 477 SMART PGNneu 174 241 - -
Cmo04g02213 477 ProSiteProfiles UBX domain profile. 357 441 IPR001012 GO:0005515
Cmo04g02213 477 Pfam PUB domain 173 246 IPR018997 -
Cmo04g02213 477 MobiDBLite consensus disorder prediction 15 63 - -
Cmo04g02213 477 CDD UBX_UBXN6 362 442 - -
Cmo04g02213 477 PANTHER PLANT UBX DOMAIN-CONTAINING PROTEIN 2 1 467 - -
Cmo04g02213 477 SMART c2hc_5 112 136 IPR006642 GO:0003677|GO:0006281
Cmo04g02213 477 ProSiteProfiles Zinc finger C2H2 type domain profile. 113 144 IPR013087 -
Cmo04g02213 477 Pfam UBX domain 358 439 IPR001012 GO:0005515
Cmo04g02213 477 CDD PUB 168 257 - -
Cmo04g02213 477 SMART ubx_3 354 443 IPR001012 GO:0005515
Cmo04g02213 477 Gene3D - 168 258 - -
Cmo04g02213 477 SUPERFAMILY Ubiquitin-like 328 441 IPR029071 -
Cmo04g02213 477 Gene3D - 351 443 - -
Cmo04g02213 477 MobiDBLite consensus disorder prediction 1 93 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g02213 Cmo-Chr4:16490883 Cmo05g00703 Cmo-Chr5:3606682 4.41E-08 dispersed
Cmo15g01021 Cmo-Chr15:5989272 Cmo04g02213 Cmo-Chr4:16490883 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g02213 K14011 - csv:101209321 727.243