Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g02216 ATGTGGCGTTGGAACTCAAAGTTTCTCCACTTGTTTCGCCAATACAAAACCGCAGAATCAAGCAAAGCAACCCCATTTCTCATCTGCTCTCTGGTTTCATCAAATTACCTTCTCTTCTCTGCTGCACCAATTCATCCAGACATGGTTCGCTTCAATGTCACCACGAAGCACACCGCCCCTATCGATGGCCAGAAGCCCGGTACTTCTGGCCTCCGCAAGAAGGTAAAAGTATTCATTCAACCGAACTACTTGGAGAATTTTGTTCAGTCAACATTTAACGCACTAACTGCTGAAAAAGTCAGAGGTGCTACACTTGTTGTATCTGGAGATGGACGCTATTATTCAAAGGATGCTATTCAGATTATAATCAAGATGGCTGCAGCAAATGGGGTACGCCGTATTTGGGTTGGTCAAAATGGCTTGCTATCAACTCCTGCTGTGTCTGCTGTTATACGTGAAAGAGCCGGGGTTGATGGATCCAGAGCATCAGGAGCATTTATTTTGACTGCAAGTCACAATCCAGGAGGTCCCCATGAGGATTTCGGCATTAAATACAACATGGAAAATGGTGGCCCTGCTCCGGAGGGAATTACTGATAAGATCTACGAAAACACAAAGTCAATAAAGGAGTACTTAATTGCTGAAGATCTACCCAACGTGGACATTTCTGCAATAGGTGTTTCTAACTTTTGCGGACCTGAAGGACAATTTGATGTTGAGGTTTTTGATTCAGCCAGTGACTATGTGAAGCTGATGAAGTCAATATTTGATTTTGAATCTATCCGCAAGCTTCAATCCTCCCCCAAGTTCTCATTCTGTTATGATGCTCTACATGGCGTCGCTGGAGCTTATGCAAAACGTATTTTTATGGAAGAGCTTGGTGCACAAGAAAGCTCATTATTGAACTGCGTACCAAAGGAGGACTTTGGAGGAGGTCATCCTGACCCCAATTTGACTTATGCCAAGGAATTGGTTGCTCGTATGGGATTGGGTAAATCAAGCTCTGGACAAGAACCTCCAGAATTTGGTGCTGCTGCTGATGGTGATGCAGATCGCAATATGGTCCTTGGTAAAAGATTTTTTGTCACTCCTTCAGACTCTGTTGCCATTATTGCTGCTAATGCTGTTGAAGCTATTCCATACTTCTCTGCTGGTTTGAAGGGTGTCGCCAGGAGCATGCCAACCTCTGCTGCACTAGATGTGGTTGCCAAAAACTTGAACTTGAAGTTTTTTGAGGTGCCCACTGGCTGGAAATTTTTTGGTAATTTAATGGATGCAGGAATGTGCTCCGTCTGTGGGGAAGAAAGTTTTGGAACTGGATCTGACCATATTCGTGAGAAAGATGGAATTTGGGCAGTTTTAGCTTGGTTATCTATTCTCGCTTATAAAAACAAGGGCAACCTTGATGGTGGAAAGCTTGTGACAGTCGAAGACATAGTTCGCCAACATTGGGCCACTTACGGTCGTCATTATTATACTAGATATGATTACGAGAATGTTGATGCTGGAGCAGCGAAGGAACTGATGGCAAATTTGGTGAAGCTGCAATCTTCACTTGATGAAGTTAATGGGATTGTCAAGGGAATCCGTTCAGATGTGTCAAAGGTTGTTCATGGTGATGAATTTGAGTATAAAGATCCTGTTGATGGTTCCATTTCAAAGCACCAGGGCATTCGATATTTGTTCGAGGATGGTTCACGACTGGTGTTCCGCCTGTCTGGAACTGGCTCGGAAGGTGCAACAATTCGGCTCTACATTGAGCAATATGAGAAGGATCCATCAAAAACGGGGAGAGATTCTCAGGAAGCTCTTGCTCCTCTGGTGGAAGTTGCTCTTAAGCTCTCAAAAATGCAAGAATTCACCGGCCGATCTGCTCCTACCGTCATTACATAA 1893 44.06 MWRWNSKFLHLFRQYKTAESSKATPFLICSLVSSNYLLFSAAPIHPDMVRFNVTTKHTAPIDGQKPGTSGLRKKVKVFIQPNYLENFVQSTFNALTAEKVRGATLVVSGDGRYYSKDAIQIIIKMAAANGVRRIWVGQNGLLSTPAVSAVIRERAGVDGSRASGAFILTASHNPGGPHEDFGIKYNMENGGPAPEGITDKIYENTKSIKEYLIAEDLPNVDISAIGVSNFCGPEGQFDVEVFDSASDYVKLMKSIFDFESIRKLQSSPKFSFCYDALHGVAGAYAKRIFMEELGAQESSLLNCVPKEDFGGGHPDPNLTYAKELVARMGLGKSSSGQEPPEFGAAADGDADRNMVLGKRFFVTPSDSVAIIAANAVEAIPYFSAGLKGVARSMPTSAALDVVAKNLNLKFFEVPTGWKFFGNLMDAGMCSVCGEESFGTGSDHIREKDGIWAVLAWLSILAYKNKGNLDGGKLVTVEDIVRQHWATYGRHYYTRYDYENVDAGAAKELMANLVKLQSSLDEVNGIVKGIRSDVSKVVHGDEFEYKDPVDGSISKHQGIRYLFEDGSRLVFRLSGTGSEGATIRLYIEQYEKDPSKTGRDSQEALAPLVEVALKLSKMQEFTGRSAPTVIT 630
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 16520595 16531292 - CmoCh04G022160.1 Cmo04g02216 381191

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g02216 630 PANTHER BNAA09G30060D PROTEIN 51 162 - -
Cmo04g02216 630 PANTHER BNAA09G30060D PROTEIN 161 630 - -
Cmo04g02216 630 Pfam Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III 364 487 IPR005846 GO:0005975|GO:0016868
Cmo04g02216 630 CDD PGM1 58 630 - -
Cmo04g02216 630 SUPERFAMILY Phosphoglucomutase, first 3 domains 348 494 IPR016055 GO:0005975|GO:0016868
Cmo04g02216 630 Gene3D - 470 630 - -
Cmo04g02216 630 SUPERFAMILY Phosphoglucomutase, first 3 domains 51 275 IPR016055 GO:0005975|GO:0016868
Cmo04g02216 630 ProSitePatterns Phosphoglucomutase and phosphomannomutase phosphoserine signature. 165 174 IPR016066 GO:0000287
Cmo04g02216 630 Gene3D - 52 251 - -
Cmo04g02216 630 Pfam Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I 64 211 IPR005844 GO:0005975|GO:0016868
Cmo04g02216 630 Pfam Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II 247 356 IPR005845 GO:0005975
Cmo04g02216 630 Gene3D - 252 360 - -
Cmo04g02216 630 SUPERFAMILY Phosphoglucomutase, C-terminal domain 489 630 IPR036900 GO:0016868|GO:0071704
Cmo04g02216 630 PRINTS Phosphoglucomutase/phosphomannomutase family signature 164 178 IPR005841 GO:0005975|GO:0016868
Cmo04g02216 630 PRINTS Phosphoglucomutase/phosphomannomutase family signature 269 288 IPR005841 GO:0005975|GO:0016868
Cmo04g02216 630 PRINTS Phosphoglucomutase/phosphomannomutase family signature 305 318 IPR005841 GO:0005975|GO:0016868
Cmo04g02216 630 PRINTS Phosphoglucomutase/phosphomannomutase family signature 340 355 IPR005841 GO:0005975|GO:0016868
Cmo04g02216 630 PANTHER PHOSPHOHEXOMUTASE FAMILY MEMBER 51 162 IPR045244 GO:0004614|GO:0005975
Cmo04g02216 630 PANTHER PHOSPHOHEXOMUTASE FAMILY MEMBER 161 630 IPR045244 GO:0004614|GO:0005975
Cmo04g02216 630 SUPERFAMILY Phosphoglucomutase, first 3 domains 246 361 IPR016055 GO:0005975|GO:0016868
Cmo04g02216 630 Pfam Phosphoglucomutase/phosphomannomutase, C-terminal domain 541 593 IPR005843 GO:0016868|GO:0071704
Cmo04g02216 630 Gene3D - 361 459 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g02216 K01835 pgm; phosphoglucomutase [EC:5.4.2.2] - csv:101218883 1105.89
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo04g02216 Cmo15g01007 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g01037 Cmo-Chr2:6304270 Cmo04g02216 Cmo-Chr4:16520595 0 dispersed
Cmo04g02216 Cmo-Chr4:16520595 Cmo15g01460 Cmo-Chr15:9902338 0 dispersed
Cmo15g01007 Cmo-Chr15:5565856 Cmo04g02216 Cmo-Chr4:16520595 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g464 . . . . . . Bma14g01897 . . . . . . . . . Cpe01g01839 . . . . . . . . . . . . . . . . Cone6ag0384 Cone9ag0411 . Csa05g02011 . . Blo06g01007 Blo11g00973 . . . . . . . Cmo04g02216 Cmo15g01007 Cma04g02117 Cma15g00965 Car04g02059 Car15g00912 Cpe13g00359 . Bhi12g00924 . . . . . . Cla01g00622 Cam01g0650 Cec01g0643 Cco01g0668 Clacu01g0638 Cmu01g0612 Cre09g1890 Lsi09g00672 . Chy09g00838 Cme09g01370
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005872 2 2 2 1 0 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 2 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo04g02216 Cmo_Chr04 FPKM 18.634329 17.713886 20.875189 21.607553 21.915133 15.710291 21.53808 28.469719 30.033743 35.257889