Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g02220 ATGAAGAGGGAGCATCATCATCTTCATCCTCGCCCGGAGCCGCCTTCCATGCCTGCCGCTCCTAATGGAGACACTTGTTTGAATACTGGAAAGGCTAAGCTCTGGGAGGAGGACGCCCAGCTCGATGGAGGAATGGATGAGCTTCTCGCTGTTTTGGGTTACAAGGTTAAGTCGTCGGACATGGCGGAAGTTGCGCAGAAGCTCGAACAGCTTGAAGAAGCTATGTGTCAAGTTCAGGATACTGGCCTTTCGCATCTAGCTTTCGATACTGTTCACTATAATCCCTCTGATCTGTCGACTTGGCTTGAAAGTATGATAACGGAGCTTCATCCGCCGCCCAGTTTTCCGCAGCCGCCTCCCTCGCAGATGAACGATTCGTCGTTTTTAGCCCCGGCGGAATCCTCCACCATCACTTCCATTGATTACGACCCCCAACGACAGACCAGTAGCCTGATTTTTGAGGAGTCTTCCAGTTCTGATTACGACCTTAAAGCTATTACGAGCAGCGCGATTTATTCACCAAGAGAGAACAAGCGTTTGAAACCCTCGTCCGAGTCGGACTCGGATTTATTCTCTACCTCGGCGATTGGGGCATCCGATTCTACAACTCGCCCCATAGTTCTCGTCGACTCGCAGGAGAACGGAATTCAACTGGTTCATGCTTTGATGGCCTGCGCCGAAGCCGTGCAGCAGAACAATCTGAATCTGGCGGAGGCTCTGGTGAAGCGAATCGGGTACTTGGCGGTTTCTCAAGCCGGAGCGATGCGGAAGGTCGCCACATTCTTCGCCGAAGCATTGGCACGCCGAATCTATCGGGTCTGCCCTGAAAATCCCCTCGATCATTCAATGTCCGATATGCTTCAATTGCATTTCTACGAGAGCTGTCCGTATTTGAAATTCGCACATTTCACCGCGAATCAAGCGATTCTTGAGGCCTTCGAAGGGAAGAAGCGCGTTCACGTAATCGATTTCTCGATGAACCAAGGGATGCAGTGGCCGGCTCTGCTTCAAGCCCTAGCTCTACGGCCGAGTGGTCCCCCAGCCTTCCGTCTCACCGGGATCGGACCTCCGGCGCCGGATAACTCCGATTACCTTCAAGAAGTCGGTTGGAAACTCGCTAAATTAGCCGAAAACATCAATGTGGAGTTCGAATACAGAGGATTCGTGGCGAATAGCTTGGCGGATCTGGACGCGTCGATGCTGGAGCTCCGACCGAGCGAGGTGGAGTCAGTGGTGGTAAACTCGGTGTTCGAGTTGCATAAGCTACTGGCTCGGCCGGGCGCCATCGAAAAGGTTATGTCGGTAGTGAAGCAGATGAAGCCGGAGATCATGACGGTGGTGGAGCAGGAAGCCAACCATAACGGTCCGGTTTTCATGGATCGGTTCACTGAGTCACTCCATTACTACTCGACGCTTTTTGACTCGTTGGAGAGCTCGCCCAACAACCAGGACAAGATGATGTCGGAAATGTACCTCGGAAAGCAAATTTGCAACGTGGTGGCTTGTGAAGGCAGCGACCGAGTGGAGCGGCACGAGACTCTGACCCAGTGGCGAACTCGGTTTTGCTCCTCTGGGTTCGAACCCATCCACCTGGGCTCCAATGCATTCAAGCAAGCAAGTATGCTCCTCGCCCTATTCGGCAGCGGAGAAGGATACCGAGTGGAAGAGAACAACGGATCTCTAACGCTGGGGTGGCACACCCGCCCGCTCATCGCCACCTCCGCCTGGAAACTCGGGAACAACTCGGCGGTGGTAACTCACTGA 1764 53.63 MKREHHHLHPRPEPPSMPAAPNGDTCLNTGKAKLWEEDAQLDGGMDELLAVLGYKVKSSDMAEVAQKLEQLEEAMCQVQDTGLSHLAFDTVHYNPSDLSTWLESMITELHPPPSFPQPPPSQMNDSSFLAPAESSTITSIDYDPQRQTSSLIFEESSSSDYDLKAITSSAIYSPRENKRLKPSSESDSDLFSTSAIGASDSTTRPIVLVDSQENGIQLVHALMACAEAVQQNNLNLAEALVKRIGYLAVSQAGAMRKVATFFAEALARRIYRVCPENPLDHSMSDMLQLHFYESCPYLKFAHFTANQAILEAFEGKKRVHVIDFSMNQGMQWPALLQALALRPSGPPAFRLTGIGPPAPDNSDYLQEVGWKLAKLAENINVEFEYRGFVANSLADLDASMLELRPSEVESVVVNSVFELHKLLARPGAIEKVMSVVKQMKPEIMTVVEQEANHNGPVFMDRFTESLHYYSTLFDSLESSPNNQDKMMSEMYLGKQICNVVACEGSDRVERHETLTQWRTRFCSSGFEPIHLGSNAFKQASMLLALFGSGEGYRVEENNGSLTLGWHTRPLIATSAWKLGNNSAVVTH 587
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 16591683 16593446 + CmoCh04G022200.1 Cmo04g02220 381195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g02220 587 MobiDBLite consensus disorder prediction 109 128 - -
Cmo04g02220 587 MobiDBLite consensus disorder prediction 1 24 - -
Cmo04g02220 587 Pfam GRAS domain family 218 577 IPR005202 -
Cmo04g02220 587 Gene3D - 44 109 IPR038088 -
Cmo04g02220 587 PANTHER DELLA PROTEIN GAI1-RELATED 22 578 IPR030006 GO:0003712|GO:0005634
Cmo04g02220 587 ProSiteProfiles GRAS family profile. 209 577 IPR005202 -
Cmo04g02220 587 Coils Coil 54 74 - -
Cmo04g02220 587 MobiDBLite consensus disorder prediction 176 196 - -
Cmo04g02220 587 Pfam Transcriptional regulator DELLA protein N terminal 46 113 IPR021914 -
Cmo04g02220 587 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 22 578 IPR005202 -
Cmo04g02220 587 SMART DELLA_2 46 119 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g02220 Cmo-Chr4:16591683 Cmo15g00767 Cmo-Chr15:3765077 0 dispersed
Cmo17g01012 Cmo-Chr17:8683766 Cmo04g02220 Cmo-Chr4:16591683 2.47E-47 dispersed
Cmo15g01000 Cmo-Chr15:5387954 Cmo04g02220 Cmo-Chr4:16591683 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9686 PF03514 GRAS 1.80E-136 CL0063 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g02220 K14494 - csv:101204164 1034.63