Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g02220 ATGAAGAGGGAGCATCATCATCTTCATCCTCGCCCGGAGCCGCCTTCCATGCCTGCCGCTCCTAATGGAGACACTTGTTTGAATACTGGAAAGGCTAAGCTCTGGGAGGAGGACGCCCAGCTCGATGGAGGAATGGATGAGCTTCTCGCTGTTTTGGGTTACAAGGTTAAGTCGTCGGACATGGCGGAAGTTGCGCAGAAGCTCGAACAGCTTGAAGAAGCTATGTGTCAAGTTCAGGATACTGGCCTTTCGCATCTAGCTTTCGATACTGTTCACTATAATCCCTCTGATCTGTCGACTTGGCTTGAAAGTATGATAACGGAGCTTCATCCGCCGCCCAGTTTTCCGCAGCCGCCTCCCTCGCAGATGAACGATTCGTCGTTTTTAGCCCCGGCGGAATCCTCCACCATCACTTCCATTGATTACGACCCCCAACGACAGACCAGTAGCCTGATTTTTGAGGAGTCTTCCAGTTCTGATTACGACCTTAAAGCTATTACGAGCAGCGCGATTTATTCACCAAGAGAGAACAAGCGTTTGAAACCCTCGTCCGAGTCGGACTCGGATTTATTCTCTACCTCGGCGATTGGGGCATCCGATTCTACAACTCGCCCCATAGTTCTCGTCGACTCGCAGGAGAACGGAATTCAACTGGTTCATGCTTTGATGGCCTGCGCCGAAGCCGTGCAGCAGAACAATCTGAATCTGGCGGAGGCTCTGGTGAAGCGAATCGGGTACTTGGCGGTTTCTCAAGCCGGAGCGATGCGGAAGGTCGCCACATTCTTCGCCGAAGCATTGGCACGCCGAATCTATCGGGTCTGCCCTGAAAATCCCCTCGATCATTCAATGTCCGATATGCTTCAATTGCATTTCTACGAGAGCTGTCCGTATTTGAAATTCGCACATTTCACCGCGAATCAAGCGATTCTTGAGGCCTTCGAAGGGAAGAAGCGCGTTCACGTAATCGATTTCTCGATGAACCAAGGGATGCAGTGGCCGGCTCTGCTTCAAGCCCTAGCTCTACGGCCGAGTGGTCCCCCAGCCTTCCGTCTCACCGGGATCGGACCTCCGGCGCCGGATAACTCCGATTACCTTCAAGAAGTCGGTTGGAAACTCGCTAAATTAGCCGAAAACATCAATGTGGAGTTCGAATACAGAGGATTCGTGGCGAATAGCTTGGCGGATCTGGACGCGTCGATGCTGGAGCTCCGACCGAGCGAGGTGGAGTCAGTGGTGGTAAACTCGGTGTTCGAGTTGCATAAGCTACTGGCTCGGCCGGGCGCCATCGAAAAGGTTATGTCGGTAGTGAAGCAGATGAAGCCGGAGATCATGACGGTGGTGGAGCAGGAAGCCAACCATAACGGTCCGGTTTTCATGGATCGGTTCACTGAGTCACTCCATTACTACTCGACGCTTTTTGACTCGTTGGAGAGCTCGCCCAACAACCAGGACAAGATGATGTCGGAAATGTACCTCGGAAAGCAAATTTGCAACGTGGTGGCTTGTGAAGGCAGCGACCGAGTGGAGCGGCACGAGACTCTGACCCAGTGGCGAACTCGGTTTTGCTCCTCTGGGTTCGAACCCATCCACCTGGGCTCCAATGCATTCAAGCAAGCAAGTATGCTCCTCGCCCTATTCGGCAGCGGAGAAGGATACCGAGTGGAAGAGAACAACGGATCTCTAACGCTGGGGTGGCACACCCGCCCGCTCATCGCCACCTCCGCCTGGAAACTCGGGAACAACTCGGCGGTGGTAACTCACTGA 1764 53.63 MKREHHHLHPRPEPPSMPAAPNGDTCLNTGKAKLWEEDAQLDGGMDELLAVLGYKVKSSDMAEVAQKLEQLEEAMCQVQDTGLSHLAFDTVHYNPSDLSTWLESMITELHPPPSFPQPPPSQMNDSSFLAPAESSTITSIDYDPQRQTSSLIFEESSSSDYDLKAITSSAIYSPRENKRLKPSSESDSDLFSTSAIGASDSTTRPIVLVDSQENGIQLVHALMACAEAVQQNNLNLAEALVKRIGYLAVSQAGAMRKVATFFAEALARRIYRVCPENPLDHSMSDMLQLHFYESCPYLKFAHFTANQAILEAFEGKKRVHVIDFSMNQGMQWPALLQALALRPSGPPAFRLTGIGPPAPDNSDYLQEVGWKLAKLAENINVEFEYRGFVANSLADLDASMLELRPSEVESVVVNSVFELHKLLARPGAIEKVMSVVKQMKPEIMTVVEQEANHNGPVFMDRFTESLHYYSTLFDSLESSPNNQDKMMSEMYLGKQICNVVACEGSDRVERHETLTQWRTRFCSSGFEPIHLGSNAFKQASMLLALFGSGEGYRVEENNGSLTLGWHTRPLIATSAWKLGNNSAVVTH 587
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 16591683 16593446 + CmoCh04G022200.1 Cmo04g02220 381195

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g02220 587 MobiDBLite consensus disorder prediction 109 128 - -
Cmo04g02220 587 MobiDBLite consensus disorder prediction 1 24 - -
Cmo04g02220 587 Pfam GRAS domain family 218 577 IPR005202 -
Cmo04g02220 587 Gene3D - 44 109 IPR038088 -
Cmo04g02220 587 PANTHER DELLA PROTEIN GAI1-RELATED 22 578 IPR030006 GO:0003712|GO:0005634
Cmo04g02220 587 ProSiteProfiles GRAS family profile. 209 577 IPR005202 -
Cmo04g02220 587 Coils Coil 54 74 - -
Cmo04g02220 587 MobiDBLite consensus disorder prediction 176 196 - -
Cmo04g02220 587 Pfam Transcriptional regulator DELLA protein N terminal 46 113 IPR021914 -
Cmo04g02220 587 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 22 578 IPR005202 -
Cmo04g02220 587 SMART DELLA_2 46 119 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g02220 K14494 DELLA; DELLA protein - csv:101204164 1034.63
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g02220 Cmo-Chr4:16591683 Cmo15g00767 Cmo-Chr15:3765077 0 dispersed
Cmo17g01012 Cmo-Chr17:8683766 Cmo04g02220 Cmo-Chr4:16591683 2.47E-47 dispersed
Cmo15g01000 Cmo-Chr15:5387954 Cmo04g02220 Cmo-Chr4:16591683 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1124 . . . . . . . . . . . . . . . . Cpe01g01843 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo04g02220 . Cma04g02121 . Car04g02063 . . . . . . . . . . . . . . . . . . . Chy09g00488 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmo14g00135 CST 77 758 GRAS Transcription Factor Family AT2G37650 53.5 2.9e-194 676.0
Cmo06g00292 CST 76 757 GRAS Transcription Factor Family AT2G37650 52.8 1.9e-193 673.3
Cmo08g00832 . 336 699 GRAS Transcription Factor Family AT2G45160 55.9 1.5e-104 377.9
Cmo13g00114 . 212 670 GRAS Transcription Factor Family AT3G46600 52.1 3.6e-131 466.1
Cmo01g00641 . 233 686 GRAS Transcription Factor Family AT3G46600 51.0 2.1e-126 450.3
Cmo07g00670 . 37 435 GRAS Transcription Factor Family AT3G49950 59.1 2.1e-128 456.4
Cmo04g00829 . 69 534 GRAS Transcription Factor Family AT4G36710 52.7 4.9e-124 442.2
Cmo04g00661 . 49 438 GRAS Transcription Factor Family AT5G41920 69.1 3.5e-147 518.8
Cmo07g01227 CST 441 835 GRAS Transcription Factor Family AT5G41920 56.3 5.7e-118 421.8
Cmo03g00275 CST 435 828 GRAS Transcription Factor Family AT5G41920 55.4 1.0e-114 411.0
Cmo07g00492 CCT,CST 1 596 GRAS Transcription Factor Family AT5G66770 57.5 4.3e-175 612.1
Cmo03g00782 CCT,CST 1 614 GRAS Transcription Factor Family AT5G66770 56.3 1.3e-174 610.5
Cmo16g00713 CCT,CST 1 591 GRAS Transcription Factor Family AT5G66770 57.9 8.1e-174 607.8
Cmo04g00840 CCT,CST 1 606 GRAS Transcription Factor Family AT5G66770 57.1 1.7e-171 600.1
Cmo20g00673 CST 21 538 GRAS Transcription Factor Family AT1G50600 56.5 9.9e-163 570.9
Cmo02g00224 CST 57 535 GRAS Transcription Factor Family AT1G50600 58.8 6.4e-162 568.2
Cmo16g00983 . 45 543 GRAS Transcription Factor Family AT1G50600 57.5 3.3e-158 555.8
Cmo06g00666 . 1 525 GRAS Transcription Factor Family AT1G50600 54.3 4.8e-157 552.0
Cmo03g00608 . 111 549 GRAS Transcription Factor Family AT1G50600 56.6 1.0e-138 491.1
Cmo09g00910 CST 115 576 GRAS Transcription Factor Family AT1G50600 54.1 2.3e-135 479.9
Cmo01g01214 CST 194 581 GRAS Transcription Factor Family AT1G50600 58.1 2.8e-133 473.0
Cmo07g00344 . 111 549 GRAS Transcription Factor Family AT1G50600 54.5 4.8e-133 472.2
Cmo01g01045 . 195 576 GRAS Transcription Factor Family AT1G50600 51.0 2.2e-109 393.7
Cmo16g01047 . 1 626 GRAS Transcription Factor Family AT1G63100 50.3 1.2e-160 564.3
Cmo04g02220 . 44 581 GRAS Transcription Factor Family AT1G14920 67.1 1.6e-205 713.0
Cmo15g01000 . 44 575 GRAS Transcription Factor Family AT1G14920 66.4 8.4e-202 700.7
Cmo15g00767 . 49 594 GRAS Transcription Factor Family AT1G14920 62.1 3.9e-183 638.6
Cmo04g02397 . 56 613 GRAS Transcription Factor Family AT1G14920 58.0 4.7e-176 615.1
Cmo01g00394 . 32 542 GRAS Transcription Factor Family AT1G14920 55.9 2.6e-150 529.6
Cmo14g00833 . 28 533 GRAS Transcription Factor Family AT1G14920 53.1 5.6e-145 511.9
Cmo04g02397 . 35 614 GRAS Transcription Factor Family AT1G66350 58.1 9.6e-179 624.0
Cmo15g00767 . 49 591 GRAS Transcription Factor Family AT1G66350 61.3 1.2e-176 617.1
Cmo04g02220 . 1 579 GRAS Transcription Factor Family AT1G66350 56.2 8.7e-172 600.9
Cmo15g01000 . 44 571 GRAS Transcription Factor Family AT1G66350 58.8 1.0e-167 587.4
Cmo01g00394 . 1 540 GRAS Transcription Factor Family AT1G66350 56.6 1.4e-156 550.4
Cmo14g00833 . 1 533 GRAS Transcription Factor Family AT1G66350 54.0 6.5e-151 531.6
Cmo02g00224 CST 19 535 GRAS Transcription Factor Family AT5G48150 65.6 2.8e-191 665.6
Cmo20g00673 CST 19 538 GRAS Transcription Factor Family AT5G48150 64.4 2.0e-189 659.4
Cmo16g00983 . 17 543 GRAS Transcription Factor Family AT5G48150 57.9 1.4e-171 600.1
Cmo06g00666 . 17 525 GRAS Transcription Factor Family AT5G48150 59.7 1.7e-169 593.2
Cmo03g00608 . 16 549 GRAS Transcription Factor Family AT5G48150 51.3 8.4e-148 521.2
Cmo07g00344 . 16 549 GRAS Transcription Factor Family AT5G48150 51.3 3.3e-144 509.2
Cmo01g01214 CST 93 581 GRAS Transcription Factor Family AT5G48150 51.4 1.9e-136 483.4
Cmo09g00910 CST 206 577 GRAS Transcription Factor Family AT5G48150 61.9 1.4e-134 477.2
Cmo04g02220 . 46 578 GRAS Transcription Factor Family AT2G01570 68.9 4.4e-212 734.9
Cmo15g01000 . 46 571 GRAS Transcription Factor Family AT2G01570 68.3 3.6e-206 715.3
Cmo15g00767 . 50 592 GRAS Transcription Factor Family AT2G01570 61.7 1.1e-183 640.6
Cmo04g02397 . 60 610 GRAS Transcription Factor Family AT2G01570 60.8 1.5e-180 630.2
Cmo01g00394 . 32 542 GRAS Transcription Factor Family AT2G01570 57.3 2.3e-152 536.6
Cmo14g00833 . 27 537 GRAS Transcription Factor Family AT2G01570 51.6 1.5e-146 517.3
Cmo04g02397 . 35 614 GRAS Transcription Factor Family AT1G66350 58.1 9.6e-179 624.0
Cmo15g00767 . 49 591 GRAS Transcription Factor Family AT1G66350 61.3 1.2e-176 617.1
Cmo04g02220 . 1 579 GRAS Transcription Factor Family AT1G66350 56.2 8.7e-172 600.9
Cmo15g01000 . 44 571 GRAS Transcription Factor Family AT1G66350 58.8 1.0e-167 587.4
Cmo01g00394 . 1 540 GRAS Transcription Factor Family AT1G66350 56.6 1.4e-156 550.4
Cmo14g00833 . 1 533 GRAS Transcription Factor Family AT1G66350 54.0 6.5e-151 531.6
Cmo15g00767 . 50 592 GRAS Transcription Factor Family AT3G03450 61.7 3.3e-177 619.0
Cmo04g02397 . 60 610 GRAS Transcription Factor Family AT3G03450 59.1 7.1e-172 601.3
Cmo04g02220 . 46 578 GRAS Transcription Factor Family AT3G03450 60.1 1.3e-170 597.0
Cmo15g01000 . 46 571 GRAS Transcription Factor Family AT3G03450 61.1 3.0e-170 595.9
Cmo01g00394 . 32 541 GRAS Transcription Factor Family AT3G03450 58.1 8.8e-154 541.2
Cmo14g00833 . 27 533 GRAS Transcription Factor Family AT3G03450 56.0 2.0e-153 540.0
Cmo04g02397 . 46 613 GRAS Transcription Factor Family AT5G17490 55.0 2.5e-158 556.2
Cmo15g00767 . 49 592 GRAS Transcription Factor Family AT5G17490 55.9 1.8e-156 550.1
Cmo04g02220 . 42 578 GRAS Transcription Factor Family AT5G17490 56.3 7.6e-155 544.7
Cmo15g01000 . 42 571 GRAS Transcription Factor Family AT5G17490 57.0 1.2e-152 537.3
Cmo01g00394 . 33 542 GRAS Transcription Factor Family AT5G17490 54.8 3.1e-140 496.1
Cmo14g00833 . 23 531 GRAS Transcription Factor Family AT5G17490 51.8 5.1e-135 478.8
Cmo01g01045 . 1 576 GRAS Transcription Factor Family AT1G21450 57.5 1.7e-174 610.1
Cmo01g01214 CST 213 581 GRAS Transcription Factor Family AT1G21450 50.5 3.3e-106 383.3
Cmo01g00641 . 312 686 GRAS Transcription Factor Family AT5G59450 55.9 2.7e-127 453.4
Cmo06g00292 CST 306 757 GRAS Transcription Factor Family AT5G59450 50.1 3.6e-124 443.0
Cmo07g00344 . 1 549 GRAS Transcription Factor Family AT4G17230 57.6 8.2e-173 604.4
Cmo03g00608 . 32 549 GRAS Transcription Factor Family AT4G17230 61.0 1.1e-172 604.0
Cmo16g00983 . 49 543 GRAS Transcription Factor Family AT4G17230 51.8 4.4e-134 475.7
Cmo06g00666 . 45 534 GRAS Transcription Factor Family AT4G17230 50.3 1.1e-129 461.1
Cmo01g01214 CST 211 581 GRAS Transcription Factor Family AT4G17230 53.6 1.6e-112 404.1
Cmo09g00910 CST 203 576 GRAS Transcription Factor Family AT4G17230 52.7 3.1e-111 399.8
Cmo02g00224 CST 124 535 GRAS Transcription Factor Family AT2G04890 66.3 1.1e-159 560.5
Cmo20g00673 CST 127 538 GRAS Transcription Factor Family AT2G04890 65.2 4.9e-157 551.6
Cmo16g00983 . 165 543 GRAS Transcription Factor Family AT2G04890 63.1 1.5e-142 503.4
Cmo06g00666 . 153 525 GRAS Transcription Factor Family AT2G04890 64.3 2.0e-142 503.1
Cmo01g01214 CST 208 581 GRAS Transcription Factor Family AT2G04890 58.8 3.8e-125 445.7
Cmo09g00910 CST 200 577 GRAS Transcription Factor Family AT2G04890 57.4 4.9e-125 445.3
Cmo03g00608 . 169 549 GRAS Transcription Factor Family AT2G04890 59.1 7.1e-124 441.4
Cmo07g00344 . 170 549 GRAS Transcription Factor Family AT2G04890 56.6 9.0e-119 424.5
Cmo11g00876 . 1 471 GRAS Transcription Factor Family AT1G50420 67.4 2.9e-177 619.0
Cmo18g00884 . 1 464 GRAS Transcription Factor Family AT1G50420 61.8 5.7e-157 551.6
Cmo06g00799 CCT,CST 415 777 GRAS Transcription Factor Family AT4G00150 55.6 2.5e-103 373.6
Cmo16g01195 CST 367 729 GRAS Transcription Factor Family AT4G00150 53.8 1.4e-101 367.9
Cmo07g00492 CCT,CST 1 596 GRAS Transcription Factor Family AT3G50650 53.4 3.4e-150 529.3
Cmo16g00713 CCT,CST 1 591 GRAS Transcription Factor Family AT3G50650 51.2 7.1e-148 521.5
Cmo07g01227 CST 185 833 GRAS Transcription Factor Family AT3G54220 60.9 2.0e-205 713.0
Cmo03g00275 CST 175 826 GRAS Transcription Factor Family AT3G54220 61.2 3.4e-205 712.2
Cmo04g00661 . 68 436 GRAS Transcription Factor Family AT3G54220 64.5 9.8e-136 481.5
Cmo07g00661 . 92 492 GRAS Transcription Factor Family AT4G37650 65.1 1.7e-154 543.5
Cmo02g00551 . 102 477 GRAS Transcription Factor Family AT4G37650 57.4 4.9e-125 445.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000304 5 4 4 7 5 4 8 4 4 4 4 4 8 4 3 7 4 8 8 4 4 3 4 4 4 4 4 4 4 3 141
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9686 PF03514 GRAS 1.80E-136 CL0063 Cmo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo04g02220 Cmo_Chr04 FPKM 56.872417 57.696083 39.945053 40.988548 38.724735 39.078415 40.325165 7.044026 6.877802 7.614388