Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g02221 ATGGAACACTTCTTGGGTCTTCTCCGAATTCGGGTGCTGCGCGGTTCTAATCTGGCTGTTCGTGATACTCGTAGCAGTGATCCTTTTGTCGTCGTCACTATGGGCGATACGAGTTTGAAGACCCGTGTGGTGAAAAATAATTGCAATCCTGAATGGAATGATGAACTGACTCTTTCTATTGCAGATCTTAGGACTCCAATCGGTTTATCAGTGTATGACAAAGACACAGTAACAGACCATGACAAAATGGGAGATGCCGCAATTGACATCGAACCATACATCGAATGTCTGAAGATGGGACTGGAAAGCCTCCCAGAGGGGTGTGTGGTTAAGAGGGTATATCCAAGCAGAACAAACGACTTAGCTGATGAGAGCCAATGTGTTTGGAACAAAGGGAAAATTATACAGAACATGCACCTTAGGTTGAAGAATGTAGAGTGTGGTGAGGTGGAGATTCAGCTCGAATGGATCGATGTTCCGGGATCTAAGGGTCTGCCGAAAGAGGGTATGAGCCACTTCTAA 522 45.59 MEHFLGLLRIRVLRGSNLAVRDTRSSDPFVVVTMGDTSLKTRVVKNNCNPEWNDELTLSIADLRTPIGLSVYDKDTVTDHDKMGDAAIDIEPYIECLKMGLESLPEGCVVKRVYPSRTNDLADESQCVWNKGKIIQNMHLRLKNVECGEVEIQLEWIDVPGSKGLPKEGMSHF 173
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 16597224 16599556 - CmoCh04G022210.1 Cmo04g02221 381196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g02221 173 ProSiteProfiles C2 domain profile. 1 106 IPR000008 -
Cmo04g02221 173 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 4 1 163 IPR044562 -
Cmo04g02221 173 SMART C2_3c 7 102 IPR000008 -
Cmo04g02221 173 Pfam C2 domain 6 92 IPR000008 -
Cmo04g02221 173 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 2 158 IPR035892 -
Cmo04g02221 173 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 10 1 163 - -
Cmo04g02221 173 Gene3D C2 domain 4 169 IPR035892 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g02221 Cmo-Chr4:16597224 Cmo18g00057 Cmo-Chr18:373965 1.37E-72 dispersed
Cmo04g00055 Cmo-Chr4:306494 Cmo04g02221 Cmo-Chr4:16597224 4.70E-80 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g02221 - - csv:101204404 305.834