Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g02226 ATGGGTACGAAGGGGAAGACGATCGAGGTTTTTGGATTCGGGCGAGAGGTGAGCGCCGGCGAGGTGAAGGAATTTATGGAGAATCACACCGGAGAGGGAACGGTATCGAAGGTGAGGATTTCGAAACCCAAGTACGAAAAATCCCGGTTGACATCTGCGAGGGTGGAATTCAGGAGCAAAGTGGCAGCGGAGTACGTGGTGGAGAAGGCGGAGGCGGAGGAGCGGCTGTGGTTTGGAAGGTGGTATCTGAAGGCGAGGAGAGTGGAGAGGGAGAGGGAGAGGGAGATGAGGGTGGAGAGATTGGAGAGATTGGAGAAGGTGAGGGTGCAGTTGGGAAGCGTGATTTGGAAGGATGAAATGAGGGTGATTTGGAGAGGGGAAGATTGGAGCGTGGAATATGGAAATGGAATGAGGAAATTGTGGTTTTATTTGAGTTATGGGGTTGAAGATGATGACTACAAAATGGAGCTCCGGTTTGAGAACATTCTGGGAGTTCAGCTTCGTTGCCCTCACAATTCATCTTCCAATCTTTTTCTCATTCAGTTGCAGGGTGCTCCACGGATTTTCAAGAAATGTCCATCCTCTTCTTCTTCTTCTTCCTCTCAATTCTATTCCAAGGAATCAACTGGTTTCCGCTGGATCAGAGATGTGGATTTCACTCCATCGTCTTGTATTGGACAATCCTTCGCTCTGTGCTTCGAAGTTTCTCCTGGAGATCAACTTCCTTCTTTCTTCCAAACATTGGTCGGCTATAAAGAAATCTATGGCCCTTTCAAACTGTCCACAGGTTCTGCTTTCTCTTCCACTTCAAATCTCGTTCCTATCGTTACTCCACCGCAACCATTTCATATCCCTTATAAAATTTTGTTCAAAATCAATGCCCTAGTTCAACATGGTTATCTTCCTGGATCAGCGCTGGATGATAAATTCTTCCGCCTGGTTGATCCCACTCGATTTCGTTCTGACTACATTGAGTACGCCCTAGAAAAATTGTTTAGTTTGAAGGAATGTTGCTATGAACCACAGAAATGGCTCAAGCAGCAATATCTGTCATTCTGCAGCTCTATGCAGCTTCCATGGAAAGCTAATATTTCTTTGGATGATAGCCTCGTCTATGTGCATAGGGTTCAAATTACACCTGCTAAGGTGTATTTTCGTGGTCCGGAGGCGAATCTTTCTAACAGAGTTGTACGTCGCTTTATTGATGATATAGATAATTTTCTTCGCGTTTCTTTTGTTGATGAGGAGTTGGATAAAATTTATTCCAGTGATCTGTCTCCCCGTACGTCTACTGAAAAGATTGAAAGAACTAGGGTTTATGATCGAATATTATCTGTTTTAAGAAATGGTATAGTCATTGGTGGCAAGAAGTTTGAGTTTCTTGCTTTCTCGGCAAGTCAACTTCGTGAAAATTCGTTTTGGATGTTTGCTTCGAGGGAGGGGCTTAATGCAGCAGATATCAGGGAGTGGATGGGTGACTTTCGTGAGATAAGAAATGTGGCGAAATATGCTGCTCGACTCGGTCAATCTTTTGGCTCGTCCAGAAAAACTTTGTGTGTTGAAGAAAATGAAATTGAAGTTATTCCTGATGTAGAAGTTGAACGGAAGAACATCAAATATTGTTTCTCTGATGGGATTGGAAAGATATCCGAAGCATTGGCTGAGATGGTTGCTGAAAAATGTGGTTTGATCAGTCATACACCATCTGCATTCCAGATCCGATATGCTGGATACAAGGGCGTTGTTGCTGTTGATCCCACATCCAAAAAGAAATTGTCATTAAGAAAGAGTATGTTGAAGTATATGTCACTTGACACTCAACTTGATGTTTTGTCATGGAGCAAGTACCAACCCTGTTTTCTCAACCGTCAGGTGATCAACCTTCTGTCCACTCTTGGAATTCAGGACGACGTTTTTGTGAAACAACAAAAGAAGGCTGTTGATCAACTTGATTCTATTCTAAGAGATCCATCAAAGGCATTAGAAGTGTTGGAATTGATGTCCCCGGGGGAAATGACTAGTGTTCTGAAGGACATGCTTTTGTTTTACAATCCACACGAAGAGCCTTTTCTAAATATGATGCTACGGACGTTTCGAGCAGATAAATTGTTAGATTTGAGGACCAAATCAAGGATATTTGTTCCTGAGGGAAGGACAATGATGGGTTGCCTGGATGAAACCCGGACCCTTGAGTATGGGCAGGTGTTTATTCACTGCTCTGTCCCTGGGAGATCAAGCGAAAGTAATTTTGTTGTCAAAGGTAAAGTGGTGGTTGCTAAAAATCCCTGTTTACACCCAGGGGATGTGCGTGTGCTCGATGCTGTTGATGTGAAAACTCTGCATCATATGGTGGATTGTGTTGTTTTTCCACAGAAAGGGAAAAGGCCTCACCCAAATGAATGCTCTGGGAGTGATTTAGATGGTGACTTATACTTTGTTTGTTGGGATCCGGAGTTGACTTGTATTAGACCAATTAAACCTATGAGCTACGAGCCTGCACCAACCATTCAGTTGGATCATGATGTGACAATTGAGGTATGCTTTCAGGAACTGTTTACTTCTAGTGCAAACACACACTTCATCATTTTCTTTCTAATAATATACATTGCTGATTTGATTCACAGATTCGAACAGATTGAAGTGCAGGAATACTTTGCCAACTACATGGTGAATGATGGTCTTGGTGGCATTGCAAATGCTCACACTGTCTTTGCTGATAAGAAGCCTAAGAAGGCAATGAGTGCTGAATGCATTGAGCTTGCAAAACTATTCTCTATTGCTGTTGACTTCCCGAAAACTGGTGTGCCAGCAAACTTGCCGCGCTCTCTTCGTGTCCATGAGTATCCAGACTTCATGGAAAAACCTAATAAACGGACTTATACATCGAATGGTGTTATCGGGAAGCTTTTTCGAGGAGTGAAAGATGTTTCTTCAGACATCAACAACATTGAAACCTTCACTAGGGAAGTTGCTGCCAAGTGCTACGATCCAGACATGGAAGTTATGGGTTTTGAAAATTATTTAAGTGAAGCTTTTGACTACAAAAGCATGTACGACTTCAAGTTGGGTAACCTAATGGATTATTATGGTATAGAAACAGAACCTGAATTAGTGAGTGGAAATATTCTGAGGATGGGAAAGTCTTTCGATAAAAGGAATGACATGGAACAAATTAGCCTTGCCATGAGGTCGCTAAGAAAGGAGGCTAGGGGTTGGTTCAACGAGAAGGGAAGTAAGTCTATTTACAACAACAACAAAGACGAAGACGATGAATATGCAAAAGCATCCGCTTGGTACCATGTTACGTATCACCCGAACTTCTGGGGTCGTTACAATGAAGGTATGCAAAGAGATCATTTTTTGAGTTTTCCATGGTGCGTTTCTGAGAAGCTTATTCAAATCAAAAGGGAGAAGATGGAGTCTTCCCCAGTGTCATCTCTGATACACAAATTTGGTAAGCTGAGTTTCTACTAG 3474 42.6 MGTKGKTIEVFGFGREVSAGEVKEFMENHTGEGTVSKVRISKPKYEKSRLTSARVEFRSKVAAEYVVEKAEAEERLWFGRWYLKARRVEREREREMRVERLERLEKVRVQLGSVIWKDEMRVIWRGEDWSVEYGNGMRKLWFYLSYGVEDDDYKMELRFENILGVQLRCPHNSSSNLFLIQLQGAPRIFKKCPSSSSSSSSQFYSKESTGFRWIRDVDFTPSSCIGQSFALCFEVSPGDQLPSFFQTLVGYKEIYGPFKLSTGSAFSSTSNLVPIVTPPQPFHIPYKILFKINALVQHGYLPGSALDDKFFRLVDPTRFRSDYIEYALEKLFSLKECCYEPQKWLKQQYLSFCSSMQLPWKANISLDDSLVYVHRVQITPAKVYFRGPEANLSNRVVRRFIDDIDNFLRVSFVDEELDKIYSSDLSPRTSTEKIERTRVYDRILSVLRNGIVIGGKKFEFLAFSASQLRENSFWMFASREGLNAADIREWMGDFREIRNVAKYAARLGQSFGSSRKTLCVEENEIEVIPDVEVERKNIKYCFSDGIGKISEALAEMVAEKCGLISHTPSAFQIRYAGYKGVVAVDPTSKKKLSLRKSMLKYMSLDTQLDVLSWSKYQPCFLNRQVINLLSTLGIQDDVFVKQQKKAVDQLDSILRDPSKALEVLELMSPGEMTSVLKDMLLFYNPHEEPFLNMMLRTFRADKLLDLRTKSRIFVPEGRTMMGCLDETRTLEYGQVFIHCSVPGRSSESNFVVKGKVVVAKNPCLHPGDVRVLDAVDVKTLHHMVDCVVFPQKGKRPHPNECSGSDLDGDLYFVCWDPELTCIRPIKPMSYEPAPTIQLDHDVTIEVCFQELFTSSANTHFIIFFLIIYIADLIHRFEQIEVQEYFANYMVNDGLGGIANAHTVFADKKPKKAMSAECIELAKLFSIAVDFPKTGVPANLPRSLRVHEYPDFMEKPNKRTYTSNGVIGKLFRGVKDVSSDINNIETFTREVAAKCYDPDMEVMGFENYLSEAFDYKSMYDFKLGNLMDYYGIETEPELVSGNILRMGKSFDKRNDMEQISLAMRSLRKEARGWFNEKGSKSIYNNNKDEDDEYAKASAWYHVTYHPNFWGRYNEGMQRDHFLSFPWCVSEKLIQIKREKMESSPVSSLIHKFGKLSFY 1157
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 16634477 16638930 + CmoCh04G022260.1 Cmo04g02226 381201

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g02226 1157 CDD RRM_SF 8 69 - -
Cmo04g02226 1157 PANTHER RNA-DEPENDENT RNA POLYMERASE 5 853 IPR007855 GO:0003968
Cmo04g02226 1157 PANTHER RNA-DEPENDENT RNA POLYMERASE 877 1154 IPR007855 GO:0003968
Cmo04g02226 1157 PANTHER RNA-DEPENDENT RNA POLYMERASE 5 853 - -
Cmo04g02226 1157 PANTHER RNA-DEPENDENT RNA POLYMERASE 877 1154 - -
Cmo04g02226 1157 Pfam RNA dependent RNA polymerase 378 973 IPR007855 GO:0003968
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g02226 K11699 RDR, RDRP; RNA-dependent RNA polymerase [EC:2.7.7.48] - csv:101205704 1757.27
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g02226 Cmo-Chr4:16634477 Cmo10g00144 Cmo-Chr10:662653 0 dispersed
Cmo05g00385 Cmo-Chr5:1732535 Cmo04g02226 Cmo-Chr4:16634477 1.30E-171 transposed
Cmo11g00654 Cmo-Chr11:3134072 Cmo04g02226 Cmo-Chr4:16634477 2.08E-20 transposed
Cmo15g00938 Cmo-Chr15:4798114 Cmo04g02226 Cmo-Chr4:16634477 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g508 . . . . . . Bma14g01918 . . . . Cma04g00090 . . . . Cpe01g01851 . . . . . . . . . . . . . . . . Cone6ag0354 . . Csa05g01978 . . . . . . . . . . . Cmo04g02226 . Cma04g02132 Cma15g00901 Car04g02070 . . . . . . . . . . . . . . . . . . . Chy09g00813 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003921 0 1 0 0 0 2 2 1 2 1 2 2 2 2 3 2 2 0 2 2 2 2 1 2 2 2 1 4 1 0 45
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo04g02226 Cmo_Chr04 FPKM 12.960834 14.583988 19.918894 21.334127 29.074364 25.441483 26.559517 27.049324 28.565887 26.233229