Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g02227 ATGGGAGATGGAATTGTGGACGCCGCTCTCGCCAGCCTCGGGAAAGGCTTTGATCTGACCTCCGATTTCAAGCTCAAGTACTGCAAAGGCAAACACAGGCTCGTCCTGCTCAACGAAGCGCAGAGACGAGATCTCATCGTTCCTGGCTTCGGCCCTGTTAAGGACGTCTCAATCGATATCAAATGCGATCGAGGCGATCGGACTCGCTACCAGTCTGATATCCTCAACTTCAATCAGATGTCGGAACTTTTCAATCGGAAATGTTCGATTCCAGGAAAAATTCCGTCCGGTTTCTTCAATGCGATGTTCGGATTCCAGAGCGGGTGTTGGGCGATGGATGCGGTGAACACCAAATGCTTAGGGCTTGACGGTTACTTCATCAGTCTCTTTAACGCTCACATTGATCGCTATCCGCTCCGCCTCTCCGATGAGGTCCGCGCCGCCGTGCCGTCCTCTTGGGATCCCCCCGCCATCGCAAGGTTCATTGAAAAGTATGGAACTCATATAATCGTTGGGCTTAGCATCGGCGGGCACGACGTGGTCCTAGTAAGGCAAGACAAGTCCTCCAATTTGGAAGCTTCAGAGCTGAAAAGCCACTTGGAAGAGCTGGGAGATCAGCTTTTCACCGGCGCCTGCACTTTCCCTCCTCCACATTCAAAACCCAAAGACCATCACAAAACCAAGCTACCACAGGCCTTCAACTTGTTTGATCCAAAGCTCGTGGCTTATGCCAACTTCTCTTCCGTCAGTGCAAAAGACGGAATAATAGTAATAACTTCAAAGAAAGGAGGGAGTCCAACAGCAAGTACCCATTGTGAGTGGCTCCCAACCGTGCTCGAATCGCCCGACGCAATTCATTTTCAGTTCATTCCGATCATCTCCCTTCTCGATCGCGTTCCTGGCAAGGGCTTTCTTTCCCATGCCATTAATCTTTATCTTCGATACAAGCCTCCTATAGCAGATTTGCAGTACTTTTTGGACTTTCAAGTGCACAAGATTTGGGCACCCATTCATAATGACCTTCCTTTAGGACCAACTCCCAACATTACTACTTCTCCTTATCTTCAACCCAACTTGATGGGTCCAAAACTTTATGTAAATACTACTCAGGTTACATCAGAGAACAAACCTGTCACAGGCTTGAGATTGTATCTAGAGGGCATCAAATCTAATAGGTTGGCAATTCATATCCAACATCTTCAAACTACTCCTATTCTTCTCCAAAACAATATCACTCAACATAACCCTCCCCTCTGGCATTCTTCGCTACACGTCGCCGATGATCGCTACGTCGAGCCTCTCAATCGCAACAAATTCTCTTACGTCTCTACAGCTCCGGTCACGTACGACCCCACCTGGGCCACTGCCACCCCAACCCCAGCAGCCTTCATAGTCACCGGAGCCCAACTCCACGTCGTGAAACATCACGACTCGAAGGCTGCTCTCCATCTCGGCCTCCTCTACTCCAAGGTCTCTAATTCCTACATCGTTCAAACGAATTGGGCACGCCACTCCTCCGACATCTCCCCTAAGTCTGGCATCTTCTCTGCCATCAGCACCTCCCTCTCTGGCGCCTCCTCTGCCCCCAAGGAGAAGCCACCCGACCCCGCTACCGTCATTGTCGATTCGGGAGTGTTTCACCACGGCCCACCGGTGCCACTTCAGGCTCAGAAGCTTGTGAAATTCGTAGAATTGTCGGAGATGCGTAAAGGGCCGCAGGACAGTCCGGGGCATTGGGTGGTGATCGGAGCTAGGCTGAACTTGGAAAATAGTAAGATTTGTTTGCATGTTAATGTGATCTCAGCCAATCCAAAAATGGGTGATTATGGAGTTATTATAGAAGATGATGATCAACATGATGATTGCCCTCAGAATTTCCTTAATCAGATTTCAATCCAACGGCATCGGAGTGGTTTAGGATCTCAAGGTTTTACGTGCTCTGTTTTCTGCGATCGAGCTATGGGTTTGAGAAGACTTAAAAACGAGATTTCTTTTCTTGATTTGGACCTTGGAGTTCACATTCCTCGAAGAAAGAGGGGTTCTTCCGGCTCTGCAATTACCAAACATTCAATCTCTATGATGGATGGCGCTACCATTCTGTTTGCATTCTCCAACTCTGTCACTCATATCCTTTCCTCTTCCTATCTTCCACTTCGAACCACTAACACAAAACCCATCACCAACACAAAACCCATCACTGAAAGAAAACCCATCACTGAAAGAAAACCCATCTCTGAAAGAAAACCCATCTCTGAAAGAAAACCCATCACTGAAAGAAAACCCAGGAAGAAGAGGTGTAAGCAAACCCCCTTTCCGACCACTCCGGACATGCCGGCGGCGATGAGAGATCGAATTGGGGAGATGGGGGCGTACCAAATCCAACTGGCAATTCAAAAACAACTGCAAGATACTGATATGAATAAGAATCATGGGCGACTATCTTTCCCTGCAAAGAAACTGAAAGTGGATTTTGCAACGGAAGAGGAGAGGAGGGTACTAAAGCAACAAGAAAACGGGGGGAAAAAAGGGATGAATGTAATGATAGTGGATCCTCTTCTCCGAGAGAGCAGCATTTGCTTGAAGTTGTGGAAGATTGGGAGCGGGGATTCCTACTGTTTAATGACACAATGGAATTGGTTAGTGGAACAGAATGGGTTCAAAAGCGGAGATCACGTCCAGCTTTGGAGCTTCAGAAAAGATGAATTTGAGGCTGAAACTCAAACCATGGTTTCTCGTCTCTGTTTCGCCATGGTTAAGCTTGATGCCACCACTGCTTCTGCTTGA 2784 47.95 MGDGIVDAALASLGKGFDLTSDFKLKYCKGKHRLVLLNEAQRRDLIVPGFGPVKDVSIDIKCDRGDRTRYQSDILNFNQMSELFNRKCSIPGKIPSGFFNAMFGFQSGCWAMDAVNTKCLGLDGYFISLFNAHIDRYPLRLSDEVRAAVPSSWDPPAIARFIEKYGTHIIVGLSIGGHDVVLVRQDKSSNLEASELKSHLEELGDQLFTGACTFPPPHSKPKDHHKTKLPQAFNLFDPKLVAYANFSSVSAKDGIIVITSKKGGSPTASTHCEWLPTVLESPDAIHFQFIPIISLLDRVPGKGFLSHAINLYLRYKPPIADLQYFLDFQVHKIWAPIHNDLPLGPTPNITTSPYLQPNLMGPKLYVNTTQVTSENKPVTGLRLYLEGIKSNRLAIHIQHLQTTPILLQNNITQHNPPLWHSSLHVADDRYVEPLNRNKFSYVSTAPVTYDPTWATATPTPAAFIVTGAQLHVVKHHDSKAALHLGLLYSKVSNSYIVQTNWARHSSDISPKSGIFSAISTSLSGASSAPKEKPPDPATVIVDSGVFHHGPPVPLQAQKLVKFVELSEMRKGPQDSPGHWVVIGARLNLENSKICLHVNVISANPKMGDYGVIIEDDDQHDDCPQNFLNQISIQRHRSGLGSQGFTCSVFCDRAMGLRRLKNEISFLDLDLGVHIPRRKRGSSGSAITKHSISMMDGATILFAFSNSVTHILSSSYLPLRTTNTKPITNTKPITERKPITERKPISERKPISERKPITERKPRKKRCKQTPFPTTPDMPAAMRDRIGEMGAYQIQLAIQKQLQDTDMNKNHGRLSFPAKKLKVDFATEEERRVLKQQENGGKKGMNVMIVDPLLRESSICLKLWKIGSGDSYCLMTQWNWLVEQNGFKSGDHVQLWSFRKDEFEAETQTMVSRLCFAMVKLDATTASA 927
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 16639377 16646382 - CmoCh04G022270.1 Cmo04g02227 381202

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g02227 927 SMART MACPF_8 117 314 IPR020864 -
Cmo04g02227 927 PANTHER MACPF DOMAIN-CONTAINING PROTEIN CAD1 4 600 IPR044663 GO:0006952|GO:0012501|GO:2000031
Cmo04g02227 927 Pfam B3 domain-containing protein At2g31720-like 777 882 IPR005508 GO:0003677
Cmo04g02227 927 Pfam MAC/Perforin domain 99 312 IPR020864 -
Cmo04g02227 927 ProSiteProfiles Membrane attack complex/perforin (MACPF) domain profile. 1 326 IPR020864 -
Cmo04g02227 927 MobiDBLite consensus disorder prediction 734 757 - -
Cmo04g02227 927 PANTHER OS02G0736300 PROTEIN 4 600 - -
Cmo04g02227 927 SUPERFAMILY DNA-binding pseudobarrel domain 797 902 IPR015300 -
Cmo04g02227 927 MobiDBLite consensus disorder prediction 720 778 - -
Cmo04g02227 927 Gene3D - 788 911 IPR015300 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g02227 - - - bhj:120067289 1018.45
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00962 Cmo-Chr4:4897965 Cmo04g02227 Cmo-Chr4:16639377 1.09E-168 dispersed
Cmo04g02227 Cmo-Chr4:16639377 Cmo16g00837 Cmo-Chr16:4397660 1.59E-163 dispersed
Cmo03g00261 Cmo-Chr3:3904558 Cmo04g02227 Cmo-Chr4:16639377 2.62E-14 transposed
Cmo05g00249 Cmo-Chr5:1069576 Cmo04g02227 Cmo-Chr4:16639377 4.79E-52 transposed
Cmo08g00094 Cmo-Chr8:485302 Cmo04g02227 Cmo-Chr4:16639377 9.26E-172 transposed
Cmo15g00934 Cmo-Chr15:4777511 Cmo04g02227 Cmo-Chr4:16639377 2.18E-60 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g515 Blo01g00773 Blo16g00758 Bda01g01794 Bda11g00189 Bpe13g01005 . . . . . . . . . . . Cpe01g01853 . . . . . . . . . . . . . . . . Cone6ag0353 . . Csa05g01977 . . . . . Bda11g00189 . Bpe02g01969 Bma01g00490 Bma06g01133 . Cmo04g02227 . Cma04g02134 . Car04g02071 . . . Bhi12g00955 . . . Hepe02g2611 . Lcy10g1378 Cla01g00646 Cam01g0674 Cec01g0665 Cco01g0693 Clacu01g0662 Cmu01g0635 Cre09g1870 Lsi09g00697 . Chy09g00812 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007498 2 1 2 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo04g02227 Cmo_Chr04 FPKM 267.10376 313.307556 332.952484 324.949799 385.902191 421.282532 379.153351 444.5578 470.480835 453.904846