Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g02231 ATGGGACGTGAACTTTGCTTTCTTTTTCTTTTACTGCCTAGGTGTAAGAAGTACCCATCTATGGAGCTAAGGGGTTTGTTTCAGTATCTCATTAATCAGTTGAAAAAAGGTCAAGGAATTGAACTTGTTCTCCTGCAGGAACTTGTTCAACAAATGGCCAATGTCCAATACACAGAAAACCTAACTGAGGAACAGTTGGATGCTATGGCAGGAAGTGAAACACTTCGTTATCAAGCAACTTCTTTTGGGGTTACTCGAAATAACAAGGCGTTGATCAAGTCAAGCAACAGACTGCGTGACTCCTTGCTTTCTAAGGATGAACCAAAATTGGCAGTCCCTCTCTTGCTACTTATTTCTCAACACCGATCAGTGGTTGTCATAAATGCAAATGCTCCTTATATTAAGATGGTCAGTGAACAATTTGATAGATGTCATGGAACTCTGCTTCAATATGTGGAATTTCTTAGTAGTGCAGTTACGCCTGCATCAGCTTATGCTCAGTTGATTCCCTCTCTCAATGAGCTTGCCCAGCTTTATCACCTAGATCCCGAGGTTGCTTTCCTGATATATCGACCGATAATGAGGTTATTTAAGTGTCAAGGTGGTTCAGATATCTTCTGGCCACTGGATGGCAATGATGCAAATGTTGCAAGCAATAATTCTGATTCGGAATCAGCAGAATGTTCTGCAGACGTTGTTTTGGAACTTGGTCCTTCACAGAAACCTGTGAGGTGGTCAGATCTCCTCGATGCTGTAAAGTCTATGTTACCTCCAAAAGCTTGGAATAGCTTGTCTCCAGATCTCTATACTACATTTTGGGGTCTCACGCTCTATGATCTTTATGTTCCTCAGAGTAGATATGAATCTGAAATTGCTAAGCAGCATTCTGCTCTTAAAGCTTTAGAAGAGCTTTCTGATAACTCAAGTTCTGCAATCAATAAAAGGAAGAAAGACAAAGAAAGAATTCAAGAATCTCTTGATCGCTTGTCCAATGAACTAAATAAGCATGAAGAAAATGTTGCTTCCGTACGCAGACGACTTTCTCGTGAAAAGGATAAATGGTTGAGCTCCTGCCCTGATACTTTGAAAATTAACATGGAGTTCCTTCAGCGATGTATTTTTCCCCGCTGTACATTCAGTATGCCTGATGCTGTCTATTGTGCTATGTTTGTGCACACTCTTCATTCCCTTGGAACACCATTTTTTAATACAGTCAACCATATTGATGTTTTGATATGTAAAACCTTGCAACCCATGATATGCTGCTGCACGGAATATGAAGCAGGCAGGCTTGGAAGGTTTTTATATGAGACACTAAAGATAGCTTATTATTGGAAGAGTGATGAATCCATTTATGAACGTGAATGTGGAAATATGCCTGGATTCGCTGTCTATTATAGGTATCCAAACAGTCAAAGAGTAACGTACGGCCAGTTCATCAAGGTTCATTGGAAGTGGAGTCAAAGAATTACACGATTACTCATACAATGCTTGGAATCTACAGAGTACATGGAAATTAGAAATGCTCTTATAATGTTGACAAAAATTTCCAACGTTTTTCCCGTCACTAGAAAGAGCGGAATCAACCTTGAGAAAAGGGTCGCTAAGATCAAAAGTGATGAAAGAGAAGATCTGAAGGTGTTAGCTACTGGTGTTGCCGCAGCTTTGGCTGCTAGAAAGCCTTCATGGGTTACAGATGAAGAATTTGGCATGGGTTATCTTGAATTAAAGACTGCACCTTCTCTTGCATCAAAGTCTTCAGCTAGTAATTTAGCTGCCACCCAAAGTAATTCCGTTTATTCTTCCCAAAATGAACATGGTGGAGGAAAGCCTACTGCCGTCCCAAGTTCAGATTCTGGAAATATGGCCAAAGACCATTCATTGAGGTCACGAACTTCTGACACGAGGACGGATAAAATAGATGGTTTTTCTGTTCCAAAATCTGAACTAGGGCATGGGAAACTCAAAGGCACTTCATTGAACGGACCAGATTCCCAGCCACTTGTGCCCTCAACTTCTGTGCATTCAGGATCGTTAAGAGTTGTGGAAGGTCCAAAACCAGGTGATGACTTAAGTAGGACTTCGAATGAAGGCTCATCAAAAGTTATTTTCAAGACCTCTTCTGAATCCGAGTTGAGAGTTTCAGCAAAACGAAACGCACCTGCTGGTATTCTTAGTAAAGCACCAAAACAAGATACCACGAAAGATGAGATTAGATCTGGAAAAGCTGCTAGCAAGAATCATGGGTCTTCCACAAGTGATCGGGAGCTTCCAATTCATGCAACAGACGGTGGTAGGCATGGAAGTTCTTATAAAACTTCTTCAGTTATGCCAAATGACTATACGCAAAGTTCATTAACTAGAGGCTTGTCCTCATCATTAAAAGCTTCAGATGGTCACGCTATTGAATTGAAGGCAGAGAGTGGAGTAGGGAGGACTTCTGATAGTAGGGCTTCGTCAGTAAAGGAAAATGGTACTGAAGCTCTTGAAGTTGCAAAATCCTCTTCTTCCAGACTTGCTCATTCTCCCAGACATGATAATTCTGCTAGTGGTTCTAGGTCTAGTGATAAACTGCCTAAAAGAGCTAGTCCTGCAGAAGAACCAGACAGACAAGGTAAACGTCGGAAAGGAGATGGTGAAAGTAGAGATGTAGATGGGGATTTTCGTAACCCTGACAAAGATAGATCCATAGACACACGATCTGTAGATGCTGATAAAATAGGAATGGATGAACAAAGTGGTTACAGAGGTTCAGATAAACCTCTGGAGAGAACAAAAGATAAGGTAAATGAAAGATACGATAGGGATTACAAAGATCGGGCAGAGCGTTCTGAGAAATCCCGTGGAGATGATCCATCAGTAGAAAAAACAAGAGACAGATCAATAGAAAGATATGGAAGAGAACGCTCGGTTGAGAAAGTGGAAAGAGTTTCTGATAGGTATCCTGACAAATCTAAGGATGAAAGAGATAAAGATGATAGGAGTAAGTTACGATATAATGATACAGCTACAGAAAAGTCTCATGTTGATGATCGGTTCCACAGACAGAGCTTGCCTCCTCCCCCTCCCTTGCCTCCTCACATGGTCCCTCAATCTGTTAATAGTGGGAGAAGAGAAGAAGATGCAGATAGAAGGTTTGGAACTACTAGACACAGTCAAAGGCTTTCTCCTAGACACGAAGAGAAGGAACGGAGACAATCAGAGGAAAATTTAATTTCACAGGATGATGCAAAACGCAGAAGAGAGGAGGAATTTCGAGAAAGAAAGAGAGAAGAGAGAGAGGTGGGGATATCATTGAAGGTGGATGACAGGGAGAGGGAAAGGGAGAGAGACAAGGCAAACCTTTTGAAGGAGGACATGGACGCTGCTGCTGCCTCCAAGAGGCGAAAACTTAAAAGGGAGCATCTGTCATTGGCTGAGGCTGGTGAGTATTCTCCTGCTGGCGCACCGCCATCTCTGGTTGGTGGTGGCGTGTCTCAATCTTATGATGGACGAGAAAGAGGAGACAGGAAGGGTGTAATGATGCAACGTGCCAGTTACTTGGATGAGCCAGGCTTGAGAATTCATGGTAAAGAAGTTGTCAACAAGATGACCAGACGTGAAGCCGATTTAATGTACGATCGGGAATGGGATGATGATAAAAGAATGAGGGCAGACCAAAAGCGGAGGCACCGGAAATAA 3681 42.08 MGRELCFLFLLLPRCKKYPSMELRGLFQYLINQLKKGQGIELVLLQELVQQMANVQYTENLTEEQLDAMAGSETLRYQATSFGVTRNNKALIKSSNRLRDSLLSKDEPKLAVPLLLLISQHRSVVVINANAPYIKMVSEQFDRCHGTLLQYVEFLSSAVTPASAYAQLIPSLNELAQLYHLDPEVAFLIYRPIMRLFKCQGGSDIFWPLDGNDANVASNNSDSESAECSADVVLELGPSQKPVRWSDLLDAVKSMLPPKAWNSLSPDLYTTFWGLTLYDLYVPQSRYESEIAKQHSALKALEELSDNSSSAINKRKKDKERIQESLDRLSNELNKHEENVASVRRRLSREKDKWLSSCPDTLKINMEFLQRCIFPRCTFSMPDAVYCAMFVHTLHSLGTPFFNTVNHIDVLICKTLQPMICCCTEYEAGRLGRFLYETLKIAYYWKSDESIYERECGNMPGFAVYYRYPNSQRVTYGQFIKVHWKWSQRITRLLIQCLESTEYMEIRNALIMLTKISNVFPVTRKSGINLEKRVAKIKSDEREDLKVLATGVAAALAARKPSWVTDEEFGMGYLELKTAPSLASKSSASNLAATQSNSVYSSQNEHGGGKPTAVPSSDSGNMAKDHSLRSRTSDTRTDKIDGFSVPKSELGHGKLKGTSLNGPDSQPLVPSTSVHSGSLRVVEGPKPGDDLSRTSNEGSSKVIFKTSSESELRVSAKRNAPAGILSKAPKQDTTKDEIRSGKAASKNHGSSTSDRELPIHATDGGRHGSSYKTSSVMPNDYTQSSLTRGLSSSLKASDGHAIELKAESGVGRTSDSRASSVKENGTEALEVAKSSSSRLAHSPRHDNSASGSRSSDKLPKRASPAEEPDRQGKRRKGDGESRDVDGDFRNPDKDRSIDTRSVDADKIGMDEQSGYRGSDKPLERTKDKVNERYDRDYKDRAERSEKSRGDDPSVEKTRDRSIERYGRERSVEKVERVSDRYPDKSKDERDKDDRSKLRYNDTATEKSHVDDRFHRQSLPPPPPLPPHMVPQSVNSGRREEDADRRFGTTRHSQRLSPRHEEKERRQSEENLISQDDAKRRREEEFRERKREEREVGISLKVDDRERERERDKANLLKEDMDAAAASKRRKLKREHLSLAEAGEYSPAGAPPSLVGGGVSQSYDGRERGDRKGVMMQRASYLDEPGLRIHGKEVVNKMTRREADLMYDREWDDDKRMRADQKRRHRK 1226
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 16670417 16679967 - CmoCh04G022310.1 Cmo04g02231 381206

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g02231 1226 PANTHER THO COMPLEX SUBUNIT 2 15 1133 - -
Cmo04g02231 1226 MobiDBLite consensus disorder prediction 1204 1226 - -
Cmo04g02231 1226 MobiDBLite consensus disorder prediction 1034 1139 - -
Cmo04g02231 1226 MobiDBLite consensus disorder prediction 595 1172 - -
Cmo04g02231 1226 MobiDBLite consensus disorder prediction 595 623 - -
Cmo04g02231 1226 MobiDBLite consensus disorder prediction 624 645 - -
Cmo04g02231 1226 MobiDBLite consensus disorder prediction 859 1015 - -
Cmo04g02231 1226 PANTHER THO2 PROTEIN 15 1133 IPR040007 GO:0000347|GO:0006397|GO:0006406
Cmo04g02231 1226 Coils Coil 312 353 - -
Cmo04g02231 1226 Coils Coil 1074 1094 - -
Cmo04g02231 1226 Pfam Transcription factor/nuclear export subunit protein 2 261 555 IPR021418 -
Cmo04g02231 1226 MobiDBLite consensus disorder prediction 659 678 - -
Cmo04g02231 1226 MobiDBLite consensus disorder prediction 1204 1218 - -
Cmo04g02231 1226 MobiDBLite consensus disorder prediction 812 857 - -
Cmo04g02231 1226 MobiDBLite consensus disorder prediction 692 714 - -
Cmo04g02231 1226 MobiDBLite consensus disorder prediction 767 794 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g02231 K12879 THOC2; THO complex subunit 2 - csv:101221461 2055.41
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo04g02231 Cmo15g00928 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo15g00928 Cmo-Chr15:4724624 Cmo04g02231 Cmo-Chr4:16670417 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g529 . Blo16g00765 . Bda11g00196 Bpe13g00998 . . . . . . . . . . . Cpe01g01856 . . . . . . . . . . . . . . . . . . . Csa05g01969 . . . . . Bda11g00196 . . . Bma06g01140 . Cmo04g02231 Cmo15g00928 Cma04g02138 Cma15g00890 Car04g02075 Car15g00836 Cpe13g00426 . Bhi12g00962 . . . . . Lcy10g1597 Cla01g00652 Cam01g0681 Cec01g0674 Cco01g0701 Clacu01g0669 Cmu01g0642 Cre09g1863 Lsi09g00705 . Chy09g00805 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005299 1 1 2 1 1 1 2 1 1 1 1 1 3 1 1 3 1 2 2 1 2 1 1 1 1 1 1 2 1 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo04g02231 Cmo_Chr04 FPKM 10.262274 9.444291 7.748203 8.543944 11.908808 12.239944 10.306184 11.083379 11.325246 12.964149