Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g02234 ATGAGGGAACCCCATTTGGGTTTTGGGGTGTTCCTTTTTGTGTTTGTGTTCTGTATCCTGTTTCTGGGTTCCTCTGTTTACGGCCAGCCGGCTGCCGGCGGTGGTGGTGATGGGTCAGTGATGAATCTCTTGAGGACTAGTATTGGAGCCCCGAGTTCTCTTGGGTGGACTGGTTCAGATTACTGTCAATGGCAGTATGTGAATTGCGATTCTCAGAACCGAGTGCTGAAAATCCAAATTGGAAACCAAAAACTCAAGGGATCACTTCCAAAGGAGCTCGTCAACCTCTCGGCGTTAGTTCAATTAGAGGTACAGGGCAACCAGCTGAGTGGGCCGTTTCCTAATCTTCCTGATTCACTGCAAATACTTCTTGCGCATGGTAATCTGTTCACTTCCATGCCGGCTGATTTCTTCGCCAAGAAGTCGGCGCTGCAAACGATATACATCGACAACAATCCCTTCGCGGCCTGGACAATCCCTGATAACATTCGAGAGGCTTCTGGGCTACAGGAATTTTCAGCAAATAGCGCTAATATAACTGGTGTAATCCCTGGATTTTTCGATGGCACTACATTTCCGACTCTTACAAGCTTGCATTTGGCGGGTAATTTTCTTGAAGGTGGATTACCAGCGAGCTTTGCAAGTTCTTCGATTCAGTCACTTTGGTTAAATGGACAACAGAGTAGTTCTAAATTAAACGGTTCCATTGCCATATTGCAAAACATGACAAATTTACTGGAGATTTGGTTGAATATGAACCAATTTTCAGGTCCTTTGCCGGATTTCTCAAACCTTCAGGGATTACAGAACTTGAGTTTGAGGGATAATCAGCTTACGGGTATTGTTCCTTCATCCTTGATAAATTTGAAATCCCTTGTGATTGTGAATTTGACGAATAATATGCTTCAAGGACCCATCCCTGCATTTAATCCTAATGTTCATCTGGACATGAGTCCTGGATCCAACAATTTTTGCTCGAATTCTCCGGGTGAACCTTGTAATCCCCTTGTGACTGCTTTGTTATCGGTTGCACAATCAATGGGTTTTCCAACAGCCTTTGCACAGGGCTGGGTAGGCAATGATCCTTGTAATAATTTCAAGGGCGTTATGTGTACTGGCAACCCTGGAAACATAACTGTTATTAACTTTAGAAATATGGACCTTGTGGGCACTATTTCGCCTAGCTTTTCATTGCTTACGTCTGTGCAAAAGCTGCTTCTCTCTAATAATTCTCTTTCTGGCACAATACCAACAGAGCTTGTTACTATGCCTAATCTTACAGAATTAGATGTCTCCAATAATAAGCTTTATGGTAAAGTGCCTGGTTTTAGGACAAATGTGATTGTGAACACGCAGGGGAACCCAGATATTGGGAAGGATAGCCCCAGTGCTCCTACTGGGAAATCACCCTCTGGTACCGGTTCGGGTGAGGTATCTGATAAAGTTCATAAGAGAAGTAATACCGGGGTGGTTGTTGGTTCCATAGTTGGTGTTCTTGTTGTTCTACTAATAGTTGGGACTGTGATTTTCTTTTACATGAGAAATAAGAGACATGGTAGTAGAGTGCCGAGTCCAAATACAGTGGTGGTACATCCTAGTCATTCTGGAGACCAAAATTCAGTGAAGATTACACTTGCACAGGCTAGAGTCGATGCGCCTGAAACCAGCAGCCCTCCTGCTGGACCTAGTGATGTCCATGTGGTTGAGGCAGGGAACCTGGTTATCTCGATTCAAGTTTTAAGGAATGTAACAAATAATTTTAGCCCCGAGAATATATTGGGGAAAGGGGGTTTTGGAACTGTTTACAAGGGGGAATTGCATGATGGTACGAAGATTGCTGTGAAGAGAATGGAGTCTGGAGTCATTGGTGAGAAGGGTTTGAATGAATTCAAGGCTGAGATTGCTGTTCTTACTAAGGTTCGGCATCGAAATTTGGTTGCGCTTCTTGGATATTGCTTGGATGGGAATGAGAGGCTTCTAGTTTATGAGTACATGCCCCAGGGGACTCTTAGCAGGTTTTTATTTAACTGGAAAGAAGAAGGGCTTAAACCCTTTGAATGGCAAAGAAGGCTTATTGTTGCCTTGGATGTAGCCAGGGGTGTTGAGTATTTGCATAGTTTAGCACATCAAAGCTTTATCCATCGTGATCTTAAACCATCGAACATTCTTCTCGGAGATGATTTGAGGGCTAAAGTAGCTGACTTTGGGTTGGTTCGTCTCGCTCCTGAAGGGAAAGCGTCGGTCGAAACAAGACTTGCAGGAACATTTGGTTATCTTGCCCCAGAATATGCAGTAACTGGACGAGTTACGACCAAGGTCGACGTTTATAGCTTCGGGGTGATCCTGATGGAGATGATATCTGGTAGAAAAGCACTCGACGATAGTCAGCCAGAAGACAGCTTGCACCTCGTGACATGGTTCCGCAGAATGTACATTAACAAGGAAGTTTTTCCAAAGGCCATAGACCCTTCAATCGACATAGACGAGGAGACCCTTGGCAGCATCACCACTGTTGCAGACTTGGCTGGTCATTGCTGTGCAAGGGAGCCATTCCAGCGGCCCGACATGAGTCATGTAGTCAACGTGCTTTCGTCTCTAGTTGATGTCTGGAAGCCAACAGAACCATCATCTGAAGAGCAATTTGCAATTGATTTGGAGATGTCATTGCCACAGGCGCTTAAGAAATGGCAGGCATTCGAAGGAGATAGTGGTACGGATATGTCTTCATCATCATTCCTTCCTAGTAGAGACAACACACAAACCAGCATCCCGAACCGGCCATCTGGTTTTGTAACTTCGTTTACGTCTGCCGATGCACGGCTTGTGATGTTTCCTGCCCGTGTTCTTGAATATTTTAGTGTCGTCCGCATCTATAAGGTTTTAGAGAAGGAAATTCCCTTACAGAATGCCCGAGTTTTTTCCTTTCTGCTGCTGAACCTTGTGTTTGTATTAGCTCAAGCTCATTATTATTTTGACAGCACTCCTTGGACATTTAGAAGAAACGAGAAATTTTTTATGTATGAAGTTTAG 3030 44.22 MREPHLGFGVFLFVFVFCILFLGSSVYGQPAAGGGGDGSVMNLLRTSIGAPSSLGWTGSDYCQWQYVNCDSQNRVLKIQIGNQKLKGSLPKELVNLSALVQLEVQGNQLSGPFPNLPDSLQILLAHGNLFTSMPADFFAKKSALQTIYIDNNPFAAWTIPDNIREASGLQEFSANSANITGVIPGFFDGTTFPTLTSLHLAGNFLEGGLPASFASSSIQSLWLNGQQSSSKLNGSIAILQNMTNLLEIWLNMNQFSGPLPDFSNLQGLQNLSLRDNQLTGIVPSSLINLKSLVIVNLTNNMLQGPIPAFNPNVHLDMSPGSNNFCSNSPGEPCNPLVTALLSVAQSMGFPTAFAQGWVGNDPCNNFKGVMCTGNPGNITVINFRNMDLVGTISPSFSLLTSVQKLLLSNNSLSGTIPTELVTMPNLTELDVSNNKLYGKVPGFRTNVIVNTQGNPDIGKDSPSAPTGKSPSGTGSGEVSDKVHKRSNTGVVVGSIVGVLVVLLIVGTVIFFYMRNKRHGSRVPSPNTVVVHPSHSGDQNSVKITLAQARVDAPETSSPPAGPSDVHVVEAGNLVISIQVLRNVTNNFSPENILGKGGFGTVYKGELHDGTKIAVKRMESGVIGEKGLNEFKAEIAVLTKVRHRNLVALLGYCLDGNERLLVYEYMPQGTLSRFLFNWKEEGLKPFEWQRRLIVALDVARGVEYLHSLAHQSFIHRDLKPSNILLGDDLRAKVADFGLVRLAPEGKASVETRLAGTFGYLAPEYAVTGRVTTKVDVYSFGVILMEMISGRKALDDSQPEDSLHLVTWFRRMYINKEVFPKAIDPSIDIDEETLGSITTVADLAGHCCAREPFQRPDMSHVVNVLSSLVDVWKPTEPSSEEQFAIDLEMSLPQALKKWQAFEGDSGTDMSSSSFLPSRDNTQTSIPNRPSGFVTSFTSADARLVMFPARVLEYFSVVRIYKVLEKEIPLQNARVFSFLLLNLVFVLAQAHYYFDSTPWTFRRNEKFFMYEV 1009
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 16709351 16713096 - CmoCh04G022340.1 Cmo04g02234 381209

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g02234 1009 PANTHER OSJNBA0070M12.3 PROTEIN 26 940 - -
Cmo04g02234 1009 ProSitePatterns Serine/Threonine protein kinases active-site signature. 712 724 IPR008271 GO:0004672|GO:0006468
Cmo04g02234 1009 SUPERFAMILY L domain-like 50 455 - -
Cmo04g02234 1009 ProSiteProfiles Protein kinase domain profile. 587 867 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo04g02234 1009 Pfam Protein kinase domain 590 861 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo04g02234 1009 MobiDBLite consensus disorder prediction 451 476 - -
Cmo04g02234 1009 MobiDBLite consensus disorder prediction 451 481 - -
Cmo04g02234 1009 Gene3D Transferase(Phosphotransferase) domain 1 665 885 - -
Cmo04g02234 1009 CDD STKc_IRAK 593 866 - -
Cmo04g02234 1009 Gene3D Ribonuclease Inhibitor 336 461 IPR032675 -
Cmo04g02234 1009 Pfam Leucine rich repeat N-terminal domain 338 371 IPR013210 -
Cmo04g02234 1009 Pfam Leucine rich repeat N-terminal domain 40 70 IPR013210 -
Cmo04g02234 1009 MobiDBLite consensus disorder prediction 901 923 - -
Cmo04g02234 1009 SMART serkin_6 587 867 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo04g02234 1009 PANTHER RECEPTOR PROTEIN KINASE TMK1 26 940 - -
Cmo04g02234 1009 Gene3D Ribonuclease Inhibitor 37 332 IPR032675 -
Cmo04g02234 1009 SUPERFAMILY Protein kinase-like (PK-like) 567 875 IPR011009 -
Cmo04g02234 1009 Gene3D Phosphorylase Kinase; domain 1 555 664 - -
Cmo04g02234 1009 MobiDBLite consensus disorder prediction 902 923 - -
Cmo04g02234 1009 ProSitePatterns Protein kinases ATP-binding region signature. 593 615 IPR017441 GO:0005524
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g02234 - - K00924 csv:101210025 1502.65
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo04g02234 Cmo18g00627 CCT
Cmo04g02234 Cmo15g00927 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g02234 Cmo-Chr4:16709351 Cmo04g02385 Cmo-Chr4:17777234 0 dispersed
Cmo15g00927 Cmo-Chr15:4719164 Cmo04g02234 Cmo-Chr4:16709351 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g532 . . Bda01g01787 Bda11g00197 Bpe13g00997 . . . . Cmo18g00627 . . . . . . Cpe01g01857 . . . . . . . . . . . . . . . . . . . Csa05g01967 . . . . . Bda11g00197 . Bpe02g01964 Bma01g00495 Bma06g01141 . Cmo04g02234 Cmo15g00927 Cma04g02141 Cma15g00889 Car04g02076 Car15g00835 Cpe13g00428 . Bhi12g00963 . . . . . Lcy10g1596 Cla01g00653 . . . . . . Lsi09g00707 . Chy09g00467 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001831 2 2 1 2 3 1 4 1 1 2 2 1 4 2 1 4 1 1 4 1 2 2 2 2 2 2 2 3 2 1 60
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74296 PF00069 Pkinase 1.40E-46 CL0016 Cmo PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo04g02234 Cmo_Chr04 FPKM 4.478144 4.619165 11.567614 12.62689 20.884636 17.792006 16.584997 1.055722 1.243687 1.218701