Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g02235 ATGGGTTCGAAAATGCAGCCAAACCACAACTCTGTGGCCAAGTGGAATGAGCAAATGGGAACAACAAAGAAGGGTTACACGTTTGTTCAAGCTAACAGGGCTTGGCTTCGTAAGTATCTTCTGCTGTGGATTATGGGGATGGCTTTTATCAGCATGTTAATCTATAATGGCATGGATGCTGATAATAAAGTGAGAAGGAATGAAGTGTTGGGGAGCATGTGTGAAGAGAGATCAAGGATGTTGCAAGATCAGTTCAGTGTTAGTGTCAACCATGTTCATGCCTTGGCTGTGCTTGTTTCCACCTTTCATTACTTCAAGACCCCTTCTGCAATTGACCAGGAGACTTTTGCAGAATACACAGCCAGAACGGCTTTCGAACGGCCTCTACTCAGTGGGGTGGCGTATGCACAGAGAGTGGTTCATTCAGAGAGGGATATATTCGAAAAGCAACATGGGTGGATGATAAAAACAATGAAAAGAGAACCTTCCCCAATTCGAGATGAATATGCACCAGTTATATTTTCTCAAGAAACAGTCTCTTATATTGAATCACTGGATATGATGTCAGGAGAGGTAGAGCAAAATGAGCTTGCTATTCAAGCTTATATGTTGGATGAAAGTGGCATGCCTATCTGTATTGTTTTTCCTCTCTCATTTGGTAGATTTCTTCTGGCTGATATGATGCAGGAGGACCGCGAAAATATTTTGAGGGCTAGAGCAACAGGAAAAGCTGTCTTAACAAGCCCCTTCAGGCTGCTGGGCTCACATCATCTTGGAGTTGTTTTGACGTTTCCCGTTTACAAATCCAAATTGCCATCTATACCAACTGAAGAAGAACGTATAGAAGCAACAGCAGGCTACGTTGGTGGAGCTTTTGATGTTGAGTCACTTGTGGAGAACTTGCTTGGGCAGCTTGCAGGGAATCAGGCCATTTTGGTAAACGTGTATGATGTTACGAACTCTTCTGACCCCCTCGTCATGTACGGTCATCAATATCAAGATGGTGACGAGTTTCTTTTGCATGGGAGTAGCCTTGATTTCGGAGATCCATTCAGGAAGCATCTGATGATTTGTAGATATCAGCAGAAGGCTCCCACATCCTGGACTGCCCTGACTACTGCATTCTTATTCTTCGTTATCGGGTTATTAGTTGGATATATTTTATACGGTGCAGCAACTCACATCGTGAAGGTTGAAGATGATTTTCATGAGATGCAGGAACTGAAAGTTCGAGCTGAGGCTGCTGATGTTGCAAAATCCCAGTTTCTTGCAACTGTTTCTCATGAAATTAGAACACCAATGAATGGCATTCTTGGAATGCTTGCTCTGCTTCTGGACACGGATTTAAGTTCAACTCAGAAGGATTATGCTCAGACTGCTCAAGCATGTGGAAAGGCACTGATAGCATTAATAAATGAGGTTCTTGATCGGGCAAAAATTGAAGCTGGAAAATTAGAACTGGAAGCAGTTCCATTTGACATTCGATCAATACTTGATGATGTCCTGTCTTTATTTTCCGAGAAGTCCAGACAAAAGGGTCTGGAGCTGGCAGTTTTTGTATCTGATAAAGTTCCAGAAATTGTAATTGGAGATCCAGGAAGATTCAGACAAATCATAACAAATCTTGTGGGTAACTCTGTTAAGTTTACTGAAAGGGGACACATATTTGTTAAAGTACATCTAGCTGAGCACTCAAAAGGCTCCATCGACACAAAATATGTCAATGGAATGTCAGACAGTGACTTGTTTATATCGGATGGTCGTGAATTTCAAACTTTAAGCGGACGTGAGGCAGCTGATAATCAGAACAATTTGGATAACTTTAAACATCAAATTGCTGATGAGAACTCTCAGTCGAATGCTTCTCCAAACAACCCAACAGTAACTAATGAGTATTGTGGTCATGTCACATTGATGGTAAGTGTGGAGGATACTGGAATTGGGATCCTTTTACATGCCCAAAATCGAGTTTTCATGCCCTTCATGCAAGCAGATAGCTCGACCTCCCGAAATTACGGAGGAACTGGTATCGGCTTGAGTATCAGCAAATGTTTAGTTGAACTAATGGGTGGTCAGATCAACTTCGTAAGTCAGCCTCAGATTGGTAGCACGTTTTCGTTCACTGCTGTTTTAGGAAAGTGCAAGAAAAATTCAATGAATGACATGAAAAAACCCAGCTCTGAAGAGCTTCCTCCCAGTTTTAGGGGAATGAAAGCAATAATAGTTGACAGGAAACCAGTTAGAGCTTCTGTAACCAGATATCATTTGAAGAGACTTGGTATCATAGTTGAAGTCACCAGTAGCATCAACATGGCAGCTTCTTTATGCGAAGAAAATGGCTCCATAGCACCAGGAAGCACACTCCTTCCAGATATTATCTTAGTTGAAAAAGACACATTGAAGTCTGATGAGGAATGTGGTATCATTCATCAACTGAACTGGAAACTGAATGCGAGTTCGTTTAAGTTACCGAAACTGATACTTCTTGCTACAAACATCACCACTGCAGAACTAGACAAGGCAAGGGCAGCAGGTTTTGCAGACACTGTGATCATGAAGCCATTGAGGGCGAGTATGGTTGCTGCCTGTCTTCAACAAGTACTTGATGTTAAGAACCAGAGGCGAGGAAGGGGCCTACCAAATGATTCTGTTTTCCTTCAGAGCCTTCTCTGTGGCAAGAGAATCTTAATTGTTGATGACAATAAAGTAAACCGAAGGGTCGCTGCAGGCGCTCTGAAGAAAGTAGGTGCAGATGTTGAGTGTGCAGAAAGCGGGAAAGCTGCACTGAAGTTGCTTGAGCTACCGCACAATTTTGATGCTTGCTTCATGGATATTCAAATGCCTGAAATGGATGGGTTTGAGGCAACTCGTCTCATCAGGATGATGGAGAGCAAGGCAAACGAAGGATCATCTACAAGCAAAAGCGAGTGGCATGTACCAATATTAGCAATGACTGCAGATGTGATTCATGCTACCTACGACGAGTGCCTGAAATACGGAATGGATGGCTACGTCTCGAAACCCTTTGAGGAAGAAAATCTATACAAGGAAGTTGCCAAGATTTTCCAAAAATCATAG 3078 42.46 MGSKMQPNHNSVAKWNEQMGTTKKGYTFVQANRAWLRKYLLLWIMGMAFISMLIYNGMDADNKVRRNEVLGSMCEERSRMLQDQFSVSVNHVHALAVLVSTFHYFKTPSAIDQETFAEYTARTAFERPLLSGVAYAQRVVHSERDIFEKQHGWMIKTMKREPSPIRDEYAPVIFSQETVSYIESLDMMSGEVEQNELAIQAYMLDESGMPICIVFPLSFGRFLLADMMQEDRENILRARATGKAVLTSPFRLLGSHHLGVVLTFPVYKSKLPSIPTEEERIEATAGYVGGAFDVESLVENLLGQLAGNQAILVNVYDVTNSSDPLVMYGHQYQDGDEFLLHGSSLDFGDPFRKHLMICRYQQKAPTSWTALTTAFLFFVIGLLVGYILYGAATHIVKVEDDFHEMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQKDYAQTAQACGKALIALINEVLDRAKIEAGKLELEAVPFDIRSILDDVLSLFSEKSRQKGLELAVFVSDKVPEIVIGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAEHSKGSIDTKYVNGMSDSDLFISDGREFQTLSGREAADNQNNLDNFKHQIADENSQSNASPNNPTVTNEYCGHVTLMVSVEDTGIGILLHAQNRVFMPFMQADSSTSRNYGGTGIGLSISKCLVELMGGQINFVSQPQIGSTFSFTAVLGKCKKNSMNDMKKPSSEELPPSFRGMKAIIVDRKPVRASVTRYHLKRLGIIVEVTSSINMAASLCEENGSIAPGSTLLPDIILVEKDTLKSDEECGIIHQLNWKLNASSFKLPKLILLATNITTAELDKARAAGFADTVIMKPLRASMVAACLQQVLDVKNQRRGRGLPNDSVFLQSLLCGKRILIVDDNKVNRRVAAGALKKVGADVECAESGKAALKLLELPHNFDACFMDIQMPEMDGFEATRLIRMMESKANEGSSTSKSEWHVPILAMTADVIHATYDECLKYGMDGYVSKPFEEENLYKEVAKIFQKS 1025
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 16716157 16724204 - CmoCh04G022350.1 Cmo04g02235 381210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g02235 1025 Pfam His Kinase A (phospho-acceptor) domain 418 483 IPR003661 GO:0000155|GO:0007165
Cmo04g02235 1025 CDD PDC1_HK_sensor 186 269 - -
Cmo04g02235 1025 ProSiteProfiles Response regulatory domain profile. 894 1022 IPR001789 GO:0000160
Cmo04g02235 1025 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 404 484 IPR036097 GO:0000155|GO:0007165
Cmo04g02235 1025 SMART HKATPase_4 530 713 IPR003594 -
Cmo04g02235 1025 Coils Coil 468 488 - -
Cmo04g02235 1025 ProSiteProfiles Response regulatory domain profile. 738 868 IPR001789 GO:0000160
Cmo04g02235 1025 PANTHER HISTIDINE KINASE 4 225 1024 - -
Cmo04g02235 1025 PANTHER HISTIDINE KINASE 4 21 196 - -
Cmo04g02235 1025 SUPERFAMILY CheY-like 892 1022 IPR011006 -
Cmo04g02235 1025 CDD HisKA 418 479 IPR003661 GO:0000155|GO:0007165
Cmo04g02235 1025 Gene3D - 391 481 - -
Cmo04g02235 1025 ProSiteProfiles CHASE domain profile. 107 357 IPR006189 -
Cmo04g02235 1025 CDD REC_hyHK_CKI1_RcsC-like 895 1018 - -
Cmo04g02235 1025 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 530 711 IPR003594 -
Cmo04g02235 1025 PANTHER TWO-COMPONENT HISTIDINE KINASE 225 1024 - -
Cmo04g02235 1025 PANTHER TWO-COMPONENT HISTIDINE KINASE 21 196 - -
Cmo04g02235 1025 Pfam Response regulator receiver domain 895 1018 IPR001789 GO:0000160
Cmo04g02235 1025 ProSiteProfiles Histidine kinase domain profile. 425 713 IPR005467 -
Cmo04g02235 1025 Gene3D - 58 110 - -
Cmo04g02235 1025 SMART HisKA_10 418 483 IPR003661 GO:0000155|GO:0007165
Cmo04g02235 1025 Gene3D - 888 1025 - -
Cmo04g02235 1025 Gene3D - 732 875 - -
Cmo04g02235 1025 Gene3D - 482 716 IPR036890 -
Cmo04g02235 1025 Pfam CHASE domain 209 328 IPR006189 -
Cmo04g02235 1025 Pfam CHASE domain 110 195 IPR006189 -
Cmo04g02235 1025 PRINTS Bacterial sensor protein C-terminal signature 697 710 IPR004358 GO:0016310|GO:0016772
Cmo04g02235 1025 PRINTS Bacterial sensor protein C-terminal signature 638 652 IPR004358 GO:0016310|GO:0016772
Cmo04g02235 1025 PRINTS Bacterial sensor protein C-terminal signature 673 691 IPR004358 GO:0016310|GO:0016772
Cmo04g02235 1025 PRINTS Bacterial sensor protein C-terminal signature 656 666 IPR004358 GO:0016310|GO:0016772
Cmo04g02235 1025 Coils Coil 598 618 - -
Cmo04g02235 1025 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 472 708 IPR036890 -
Cmo04g02235 1025 SMART CHASE_2 107 330 IPR006189 -
Cmo04g02235 1025 CDD HATPase_EvgS-ArcB-TorS-like 535 711 - -
Cmo04g02235 1025 Gene3D CHASE domain 111 364 IPR042240 -
Cmo04g02235 1025 SUPERFAMILY CheY-like 733 870 IPR011006 -
Cmo04g02235 1025 SMART REC_2 893 1018 IPR001789 GO:0000160
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo04g02235 Cmo15g00925 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g02235 Cmo-Chr4:16716157 Cmo08g00183 Cmo-Chr8:1074486 0 dispersed
Cmo04g00017 Cmo-Chr4:90156 Cmo04g02235 Cmo-Chr4:16716157 0 transposed
Cmo15g00925 Cmo-Chr15:4707929 Cmo04g02235 Cmo-Chr4:16716157 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9688 PF02518 HATPase_c 4.40E-31 CL0025 Cmo TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g02235 K14489 - csv:101209777 1745.33