Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g02238 ATGTTCGAGGGCAAGGATCTCGCCTCCGATGGTGAGAACTCTCGGACCAAGCTTTGGCGCCATGTTCCTGAGCGTGTGAGGCCGAATTCTGATGCGAAATCTGGTTTTTCGGACAAGGGTTTTGGTTTTCGGGAAGAATCGGTGATGGGTTCTGATGGGTTGTATTCGAAATCTCCGAGAATCGGGAATTCGGGCTCTCAAGAACTCACTCTTAGCTACCTTTGTGAGAATTCGAAAGAGAAGGGCTATGCGGCTTCCTTCGAGAAAGGTAGTTACAAAGGTAAGGAAGTTTTGTTTTCTCAGAATTGTAACGAAAATGATAAATGGGTTGAGAGGGATTTCCTGAATTTGAACTCGATTAGGGGAAATCAATCGAAGCGGGAGATTGAGGAGGAGATTGAAAGGGAGAATCGGGGAAAGAAACCCAAGCTTGAAACGCTTAATCTTTCTTTAGCTTTGCCTGAAGTTTCCCTCTCTCTCACTGCTTCAAATGCTTTGCACAATGAAGATCCTCCCCCTGTCCGGTCTAAGCCCTGTAGGAGCGTTCAATCTTTGGCTCCTTCCATGAACAACACCCAAACTACTTGTTCTAACGATTTCACTGCTGCTTCGCTTTCCTATTCCTACTCCCACCAATTTTCTCACAGCCCCAGTTGCTCCTTGACTCGAAATTCGACTGAGAATTATGAGTATTCGGTTGGGAGAGACGACCATATTTGGAACTGTGGAGAGGGAACTAATGGTTCGGTTCATAGCAGGTTCAAACCATTAGGGGATGGAGTTGCCTTATCAAATCATGGAAGTGGGCTGAATTCCTTGTTGCAGGGGAATCGCCCTTTGAATAAGGAGGTTTGTAACAACTCCGATGAACACTCGTTTTTCCCGTCTGAACTACCGGCGAGACCGAAAATGGAGGCAAAGTCGGGGAATTCGATTGGAAGGGGATCAGAAAACTTGAAAGGGGTAGAGGGTATTACTAGGCCGGAGAGAATTATTCGCGAAATCGTCTCGGAGTCTATCTTGGTCATGTCTCAGATAGTTCAAGAGCTTCCTGATGAAACACTTGCATCAATCAAAGATTATTTGAAAGATCTGATTGCTAAGCCTGACAAGAGAGAAGAATTATCGTCCCTCCAAAAGCGGCTCGAGCGACGATCCGATCTGACTAAGGAAACTCTATCAAAGTGTCACAAAGCACAGCTTGAAATTCTAGTTGCAGTGAAGATGGGGCTTGCTAGTTTCATCTCTGCAAAAAGCAGGTGCTCCATTTCTGAGCTTGTGGACATTTTCTTGTTTCTGAAATGCAGGAACTGCAAGAATGTAATCCCAGTTGATGATTGTGACTGCAAAATCTGCTCAGCCAACAAGGGGTTTTGCAGCTCATGTATGTGCCCCATTTGTTTGAACTTCGATTGTGCAAACAATACATGTAGCTGGGTTGGTTGTGACGTCTGCTCCCATTGGTGCCATGCTTCCTGTGGGATTGAGAAGAATCTCATCCGACCAGGTCCGAGCCTGAAAGGACCGTCGGGGACAACAGAGATGCAGTTCCACTGCATTGCTTGTAATCATGCTTCAGAGATGTTTGGATTTGTGAAGGATGTTTTTGTGTACTGTGCTAAGAACTGGGGTCTAGAAACCTTGATGAAGGAGCTTGAATGTGTGAAAAGGATCTTTATTGGAAGTGATGATTACAAAGGCAAGGATTTGTATATTAAAGCTGCTCGGATTCTGGCCAAGCTCGAATCCAAAGCACTTGCTCCTTGGGAGGCCTGCAATATCATTCTTGAATACTTCAATCATGGCACATCAGAGATTTCAACTTCAGGGGTATTCTCCGAGAAGTTGGGAACAACCGACACGGCCAGCCTGTCAAAAGAGGGGATGTCGCTTCCTCCGTCGGGTTCCCTACCTTCATCATACGTGATGCAGAAAAACACCCCATCTAGGCCACATCATGACTTGATTACCAGTGATCTTCAACGGAACAATCTCAAAGCCACTATTGGCAGCGACTTGAACGCAGTCGATGAGTTTCGATTCGGGACGTATACAAAGAAAGACGGCCTGGAGAGCTTGGAAAGCATTATAAGAATCAAGAAAGCAGAGGCAGGGATGTTCCAAAACAAGGCAGACGAGGCACGGAGGGAGGCTGAAAGACTAAGACAGATAATCATTGCGAAGACGGAGAAGCTGGACGAGGAGTACGCAGAGAAGATCGGGAAGCTGTGCTTGAAAGAGGTGGAGAATAGGCGGAGGAAGAAGGCGGAGGAGCTGAAGGCGCTGGAGAACTCTCAAATCGATTACTACAACATGAAGATGAGAATGCAGAAGGAGATAGGTGGATTGTTGGAGAGGATGGAAATGACAAAAAAGCAAATAGTGTGA 2388 46.06 MFEGKDLASDGENSRTKLWRHVPERVRPNSDAKSGFSDKGFGFREESVMGSDGLYSKSPRIGNSGSQELTLSYLCENSKEKGYAASFEKGSYKGKEVLFSQNCNENDKWVERDFLNLNSIRGNQSKREIEEEIERENRGKKPKLETLNLSLALPEVSLSLTASNALHNEDPPPVRSKPCRSVQSLAPSMNNTQTTCSNDFTAASLSYSYSHQFSHSPSCSLTRNSTENYEYSVGRDDHIWNCGEGTNGSVHSRFKPLGDGVALSNHGSGLNSLLQGNRPLNKEVCNNSDEHSFFPSELPARPKMEAKSGNSIGRGSENLKGVEGITRPERIIREIVSESILVMSQIVQELPDETLASIKDYLKDLIAKPDKREELSSLQKRLERRSDLTKETLSKCHKAQLEILVAVKMGLASFISAKSRCSISELVDIFLFLKCRNCKNVIPVDDCDCKICSANKGFCSSCMCPICLNFDCANNTCSWVGCDVCSHWCHASCGIEKNLIRPGPSLKGPSGTTEMQFHCIACNHASEMFGFVKDVFVYCAKNWGLETLMKELECVKRIFIGSDDYKGKDLYIKAARILAKLESKALAPWEACNIILEYFNHGTSEISTSGVFSEKLGTTDTASLSKEGMSLPPSGSLPSSYVMQKNTPSRPHHDLITSDLQRNNLKATIGSDLNAVDEFRFGTYTKKDGLESLESIIRIKKAEAGMFQNKADEARREAERLRQIIIAKTEKLDEEYAEKIGKLCLKEVENRRRKKAEELKALENSQIDYYNMKMRMQKEIGGLLERMEMTKKQIV 795
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 16741707 16746067 + CmoCh04G022380.1 Cmo04g02238 381213

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g02238 795 Coils Coil 704 731 - -
Cmo04g02238 795 MobiDBLite consensus disorder prediction 293 315 - -
Cmo04g02238 795 CDD PHD_OBE1_like 463 522 - -
Cmo04g02238 795 PANTHER PROTEIN OBERON 3 1 794 - -
Cmo04g02238 795 Coils Coil 745 765 - -
Cmo04g02238 795 Pfam Coiled-coil region of Oberon 659 784 IPR032535 -
Cmo04g02238 795 Pfam PHD - plant homeodomain finger protein 436 557 IPR032881 -
Cmo04g02238 795 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 346 368 IPR004082 -
Cmo04g02238 795 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 385 400 IPR004082 -
Cmo04g02238 795 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 400 415 IPR004082 -
Cmo04g02238 795 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 426 447 IPR004082 -
Cmo04g02238 795 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 470 490 IPR004082 -
Cmo04g02238 795 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 543 562 IPR004082 -
Cmo04g02238 795 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 691 711 IPR004082 -
Cmo04g02238 795 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 730 752 IPR004082 -
Cmo04g02238 795 MobiDBLite consensus disorder prediction 1 32 - -
Cmo04g02238 795 MobiDBLite consensus disorder prediction 1 38 - -
Cmo04g02238 795 PANTHER VERNALIZATION-INSENSITIVE PROTEIN 3 1 794 IPR004082 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g02238 - - - csv:101209125 1349.34
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo04g02238 Cmo15g00924 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g02238 Cmo-Chr4:16741707 Cmo08g00508 Cmo-Chr8:3161087 2.90E-126 dispersed
Cmo15g00924 Cmo-Chr15:4694706 Cmo04g02238 Cmo-Chr4:16741707 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g537 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo11g00963 . . . . . . . Cmo04g02238 Cmo15g00924 Cma04g02146 Cma15g00885 Car04g02079 Car15g00832 Cpe13g00430 . Bhi12g00970 . . . . . Lcy10g1592 Cla01g00657 Cam01g0687 Cec01g0679 Cco01g0707 Clacu01g0676 Cmu01g0650 Cre09g1857 Lsi09g00710 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005873 3 1 1 2 2 1 2 1 1 0 1 1 2 1 1 2 1 2 1 1 1 2 1 1 1 1 1 2 1 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo04g02238 Cmo_Chr04 FPKM 13.320242 13.686002 23.559431 23.960724 38.234097 37.540382 40.108368 29.877388 28.733419 30.015383