Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g02242 ATGGGTGGGAATCATGGAGAAGTGATTTGGCCAACATTGGTTGCTAATAAGATCTTGAAGAAGAGATTAGGAAGCCATAACTTTGTGGCTGATACTCCAACCAACAACACCATTCCACTATATGCTCAATCTTCTTCACTCACAAATGCCTTCTACAACCCTAAACCCATCCAAACCTACAAGGTTTTTGTTAGTACATGGAATGTTGGAGGTGTTGCACCAAATCAAGATTTGGACATGGAGGATTGGGTGGACAGTTCTTGTGATATCTATGTTTTTGGATTCCAAGAAGTCGTGCCATTGAAAGCCTCGAATGTTTTTGGTTCGGAGAACAGAGAAATATGCGGAGGATGGAATAGAGTGATGAGAGAATGTTTGAAGAAGAAAGTGAAACAAAATTTCGAGTGTATCATAAGCAAGCAAATGGTTGGGATAATGATATCAATATGGGTTCGAAGTGATCTTCATCCATTCATTGGGTATCCAAGTGTGTGTTGCATTGGGTGTGGGATCATGAGCTGCCTCGGGAACAAGGGATCGGTATCAGTAAGATTTGGGCTGCATGAAACAAGCTTTTGCTTTGTGTGCACTCACTTGGCATCAGGAGGAAAGGAAGGAGACGAGAAGAACAGAAATGAAAATCTGAAAATGGAGATGATGAATGGTAAAGTATTGGAAGGATGGGAAGAAGGGAACATAAAATTTGGGCCAACTTACAAATATTATCCAAATTCAGAGGCTTATTATGGAGGTGTTCATGGCCTAAAAGCTCAAAAAAGGAGGGCTCCTGCATGGTGCGACCGAATTATATGGAACGGGAAGGGAATTAAGCAAGTATCATACGATCGAGGAGAATCAATGTTGTCAGATCATAGACCTGTAATGGCCATGTTCATGATAGAAGTTGAATCATCGACGAACTTAAAAACTTTGAGGAGTTTGTTTCTATCAAACAGGTTTGAACATCTCAATAATTCTAATACCCCATTTGTTGAGGCGGATGAGGATGAAGACGGTGATGAGATATTTTCAACCGTCGGTTTTGTGTGCAAAACAAAATCGACTTTTGAAAGTCATTTTTAA 1083 40.26 MGGNHGEVIWPTLVANKILKKRLGSHNFVADTPTNNTIPLYAQSSSLTNAFYNPKPIQTYKVFVSTWNVGGVAPNQDLDMEDWVDSSCDIYVFGFQEVVPLKASNVFGSENREICGGWNRVMRECLKKKVKQNFECIISKQMVGIMISIWVRSDLHPFIGYPSVCCIGCGIMSCLGNKGSVSVRFGLHETSFCFVCTHLASGGKEGDEKNRNENLKMEMMNGKVLEGWEEGNIKFGPTYKYYPNSEAYYGGVHGLKAQKRRAPAWCDRIIWNGKGIKQVSYDRGESMLSDHRPVMAMFMIEVESSTNLKTLRSLFLSNRFEHLNNSNTPFVEADEDEDGDEIFSTVGFVCKTKSTFESHF 360
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 16764760 16768131 + CmoCh04G022420.1 Cmo04g02242 381217

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g02242 360 Pfam Endonuclease/Exonuclease/phosphatase family 66 196 IPR005135 GO:0003824
Cmo04g02242 360 SUPERFAMILY DNase I-like 52 303 IPR036691 -
Cmo04g02242 360 SMART i5p_5 58 306 IPR000300 GO:0016791|GO:0046856
Cmo04g02242 360 Gene3D Endonuclease/exonuclease/phosphatase 43 211 IPR036691 -
Cmo04g02242 360 PANTHER TYPE IV INOSITOL POLYPHOSPHATE 5-PHOSPHATASE 9 13 214 - -
Cmo04g02242 360 PANTHER TYPE IV INOSITOL POLYPHOSPHATE 5-PHOSPHATASE 9 13 214 IPR045849 GO:0004445|GO:0046855
Cmo04g02242 360 PANTHER TYPE IV INOSITOL POLYPHOSPHATE 5-PHOSPHATASE 9 214 322 IPR045849 GO:0004445|GO:0046855
Cmo04g02242 360 PANTHER TYPE IV INOSITOL POLYPHOSPHATE 5-PHOSPHATASE 9 214 322 - -
Cmo04g02242 360 Gene3D Endonuclease/exonuclease/phosphatase 212 328 IPR036691 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g02242 - - - csv:101210216 372.474
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g02242 Cmo-Chr4:16764760 Cmo14g00159 Cmo-Chr14:696974 4.66E-68 dispersed
Cmo15g00920 Cmo-Chr15:4666332 Cmo04g02242 Cmo-Chr4:16764760 9.95E-43 transposed
Cmo15g00918 Cmo-Chr15:4664518 Cmo04g02242 Cmo-Chr4:16764760 1.42E-76 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g547 . . . . . . . . . . . . . . . . Cpe01g01861 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo04g02242 . Cma04g02149 Cma15g00882 Car04g02082 Car15g00829 Cpe13g00433 . Bhi12g00977 . . . . . Lcy10g1586 Cla01g00661 Cam01g0692 Cec01g0684 Cco01g0712 Clacu01g0680 Cmu01g0655 Cre09g1851 Lsi09g00715 Csa05g01288 . Cme09g01292
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013390 0 1 0 0 0 1 2 1 1 0 1 1 2 1 1 1 1 0 2 1 1 1 1 1 1 1 1 1 1 1 27
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo04g02242 Cmo_Chr04 FPKM 1.120773 2.033325 3.507244 3.487257 47.227016 48.055717 48.634392 5.045346 4.851652 4.482683