Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g02246 ATGTTGAAACTTTCTTCTTCTTCTGCAGCTGCTACAGCTTCTTCTTCTGGTGGTTCTCCACCTCCTCCACCCAATTCTGACCATGGGATCACCAGTAAAAGAAAGAGAAGACCAGCAGGAACCCCAGATCCAGATGCTGAAGTGGTTTCCTTATCGCCAAAAACCCTTTTGGAATCGGATCGGTATGTTTGTGAAATATGCAACCAAGGGTTCCAAAGGGATCAGAATCTTCAAATGCACCGCCGCCGCCACAAGGTGCCGTGGAAGCTGCTCAAGAGAGCGGAGACGGCGGAGGCAGTCAAGAAAAAGGTGTTCGTTTGTCCTGAACTCACTTGTCTCCACCATGACCCTCGCCATGCCCTTGGTGACCTCGTCGGTATCAAAAAACACTTCCGGAGAAAGCATAGCAATCAGAAGCATTGGGTTTGTGACAAATGCTCTAAGGCTTATGCTGTTCATTCTGATTTCAAAGCTCATCTCAAAACTTGTGGCACTCGTGGCCACTCTTGTGATTGTGGCCGTGTCTTTTCTAGGTCCTCTCTCTCTCTCTCTCTCTCTAACTTTTCAATTTTATCGTTCGTGTTCATAGATATTTGA 597 47.07 MLKLSSSSAAATASSSGGSPPPPPNSDHGITSKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRAETAEAVKKKVFVCPELTCLHHDPRHALGDLVGIKKHFRRKHSNQKHWVCDKCSKAYAVHSDFKAHLKTCGTRGHSCDCGRVFSRSSLSLSLSNFSILSFVFIDI 198
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 16801358 16802185 + CmoCh04G022460.1 Cmo04g02246 381221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g02246 198 SUPERFAMILY beta-beta-alpha zinc fingers 61 161 IPR036236 -
Cmo04g02246 198 MobiDBLite consensus disorder prediction 1 51 - -
Cmo04g02246 198 SMART c2h2final6 62 84 IPR013087 -
Cmo04g02246 198 SMART c2h2final6 105 135 IPR013087 -
Cmo04g02246 198 SMART c2h2final6 141 168 IPR013087 -
Cmo04g02246 198 ProSiteProfiles Zinc finger C2H2 type domain profile. 62 84 IPR013087 -
Cmo04g02246 198 PANTHER OS08G0467100 PROTEIN 11 178 - -
Cmo04g02246 198 MobiDBLite consensus disorder prediction 1 16 - -
Cmo04g02246 198 ProSitePatterns Zinc finger C2H2 type domain signature. 64 84 IPR013087 -
Cmo04g02246 198 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 11 178 - -
Cmo04g02246 198 Gene3D Classic Zinc Finger 39 109 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo04g02246 Cmo15g00913 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g02246 Cmo-Chr4:16801358 Cmo13g01006 Cmo-Chr13:8563956 2.37E-97 dispersed
Cmo15g00913 Cmo-Chr15:4635933 Cmo04g02246 Cmo-Chr4:16801358 3.14E-100 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9692 None None None None Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g02246 K25871 - csv:101210468 307.76