Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g02248 ATGGAAAGAATCCTCTCTACTTTGGCAATGATTTTTATCTTATTTGCTTTGGCTTCTTCAGCTGAACAAGAGGCTGTGAGTTCAATAAAAACTGATGCTGCAGCTCTTCTTAAGTTCAAGGACATGATTGACAAGGACCCAAATGGAGTGTTGTCCAGTTGGAAGCTTGAGAACAATCCATGTTCATGGTATGGAGTTTCATGCCAATCCGGAAGAGCAATTGCTCTTGATCTGAGTGGTTGTAATCTTGCAGGGAATATTCATTTTGATCCTCTGTCTTCTCTGGATATGTTGTTGGCTTTGAATTTGTCTACAAATTCTTTCACTATAAACTCAACTACTTTGCTTCATCTTCCTTATAATTTGCAGCAACTTGAGCTCTCTCTTGCCAAAGTTGTAGGTAGTGTGCCAGAGAATCTTTTCTATAAGTGTCCAAATCTTATGTTTGTAGACCTTTCATTCAACAATCTTACAAGCTATCTGCCTGAAAATCTTCTGTTTAATGCTAATAAGCTTCAAGATCTTGATCTCTCCTACAACAATCTAACCGGGTCGATCTCAGGATTAAGAATATATGAGAATTCTTGCAGCTCTTTGTTGCGCATTGAGCTTTCGGGGAATCAAATTGTCGGTTCGATTCCGAGTGGTATTTCGAACTGCTCGAATCTGCAAACGCTTGGTATGTCAAACAATTTTCTCAGTGGGGATATCCCCAGATCTTTAGGGGAAATCAGCAGTTTACAGAGGGTGGATCTATCTCACAATCAGCTCACTGGTTGGCTTCCTTCTGATTGGAGAAATGCCTGCAATTCACTTCAAGAACTAAGGCTTAGCTACAACAACATTTCTGGTGCAATTCCAGCTTCCTTCTCTGCTTGTTCTTGGCTGCAAATTTTGGATCTTTCAAATAATAACCTATCTGGTCCTTTACCGGATTCCATCTTCAAGAATCTTGTCTCTTTACAGAGCTTGCTATTGAGTAATAACATTATCTCTGGATCATTGCCTTCATCCATATCTCACTGCAAGAATCTGCAGCTTGTAGACTTAAGTTCCAATAGAATTTCTGGATTGATCTCACCAGATATATGTCCAGGTGCTGAGTCACTTCAGGAACTGAAAATTCCAGACAATCTCATCATAGGAGGAATCCCACCTGAGCTCTCACTGTGTCCACAGCTAAAGACAATTGATTTTAGTTTAAACTATCTGAAAGGCTCCATACCAGCAGAGCTTGGAAAGCTTCAGAATCTTGAACAGCTGATAGCATGGTTCAATGGTTTGGAAGGGAAAATACCTTCAGAATTGGGGAATTGTAGAAACTTGAAGGATCTTATACTTAATAACAATCATTTAAGTGGTGAAATCCCCACTGGATTGTTCAGTTGTAGCAATCTTGAATGGATTTCACTCACGAGTAATGAATTAACAGGTGAGATCCCAAAAGAATTTGGTCTTTTGCCAAGGCTGGCTGTCCTGCAACTTGGAAACAATAGTTTAAGTGGTCAGATACCAGCGGAGTTGGCAAACTGCAGCACTTTGGTTTGGTTGGATTTGAACAGCAATAAGCTTACAGGGGAAATACCACCTAGACTTGGCAGGCAGCTTGGAGCCAAATCATTGAATGGGATTCTTTCTGGAAACACTCTAGTGTTTGTTCGAAACGTCGGGAATTCGTGTAAAGGAGTCGGGGGCTTGTTAGAGTTTTCTGGAATCAGACCTGAAAGACTACAGCAAGAACCAACATTGAAGACCTGTGATTTCACTAGATTGTACTCTGGTCCAGTCCTCAGTTTGTTTACAAAGTACCAAACTTTGGAGTACTTGGATCTTTCTTACAATGAGCTTCGTGGGAGAATACCAGAAGAGTTCGGAGATATGGTTGCCTTACAGGTTCTAGAGTTATCACACAACCAACTTTCTGGAGAGATTCCAGCATCGTTCGGTCGCCTAAAGAACTTAGGAGTGTTTGATGCATCATATAACAGACTGCAGGGTCATATTCCAGATTCATTTTCAAACTTATCATTCTTAGTGCAAATTGATCTATCTTATAATGAACTAACAGGGCGAATTCCATCAAGGGGGCAGCTCAGTACACTACCTGCAAGTCAGTATGCAAACAATCCAGGACTTTGTGGAGTTCCTTTGCCTGAATGCCAGAGTGAAGACCAGCCAGCGACAAGTCCTAATGTAGATGCTGGAAAAGGAAGAACAAAGCCAGAATCAGTGTCATGGGTTAATAGTATTGTTTTAGGTGTTCTTATTTCCATTGCCTGTGTGTGCATTTTGATTGTATGGGCTATTGCCATGCGTGCAAGACGAAAAGAAGAAGAGGAAGTGAAGATGCTTAATAGTTTACAAGCAATACATGCCCCTACTACATGGAAAATTGACAAAGAGAAAGAGCCACTGAGTATCAATGTGGCAACTTTCCAAAGACAGCTAAGAAAGCTCAAGTTCTCCCAACTGATAGAAGCAACTAATGGCTTCTCAGCAGAAAGTCTCATTGGTAGTGGCGGGTTTGGTGAAGTGTTTAAAGCAACACTAAAGGATGGATCGAGCGTTGCAATCAAGAAACTGATACGTCTTAGTTGCCAGGGAGACCGTGAATTCATGGCGGAGATGGAAACCTTAGGAAAGATCAAACATGGAAATCTAGTACCTCTTCTGGGATACTGTAAAATAGGTGAGGAGAGGCTGCTAGTGTATGAGTTCATGAAGTTCGGTAGCCTAGAAGAGATGCTTCATGGAAGAGCAAAGATGCAAGATTGCAGAATTCTAACATGGGATGAAAGGAAAAAGATAGCCAGAGGTGCTGCTAAAGGACTCTGTTTCCTACACCATAACTGCATTCCACACATAATTCACAGAGACATGAAGTCCAGCAATGTACTTCTGGACCATGATTTAGACGCAAGAGTTTCAGATTTTGGAATGGCAAGGCTGATAAGTGCTCTTGACACCCATCTGAGTGTAAGCACACTTGCAGGCACTCCTGGTTATGTCCCTCCTGAGTACTACCAAAGCTTCAGGTGCACAGCAAAAGGCGACGTCTATTCGTTCGGTGTCGTTCTCTTAGAACTCTTGACAGGGAAACGACCAACTGATAAGGAGGATTTTGGGGACACCAATTTGGTGGGTTGGGTCAAAATGAAAGTCAATGATGGAAAACAAATGGAAGTGATAGATCCAGAGTTGCTTTCAGTGACCAAAACAAGTGACGAATCAGAAGCAGAAGAAGTTAAAGAAATGGTTAGATATTTGGAGATAACTCTTCGGTGTGTTGAAGAGTTCCCTTCCAAAAGGCCTAACATGTTGCAGGTGGTAGCCATGCTACGAGAGTTGATGCCTGGATCAACTAATGGAAGCAGCAACAGTGCTTGA 3387 41.66 MERILSTLAMIFILFALASSAEQEAVSSIKTDAAALLKFKDMIDKDPNGVLSSWKLENNPCSWYGVSCQSGRAIALDLSGCNLAGNIHFDPLSSLDMLLALNLSTNSFTINSTTLLHLPYNLQQLELSLAKVVGSVPENLFYKCPNLMFVDLSFNNLTSYLPENLLFNANKLQDLDLSYNNLTGSISGLRIYENSCSSLLRIELSGNQIVGSIPSGISNCSNLQTLGMSNNFLSGDIPRSLGEISSLQRVDLSHNQLTGWLPSDWRNACNSLQELRLSYNNISGAIPASFSACSWLQILDLSNNNLSGPLPDSIFKNLVSLQSLLLSNNIISGSLPSSISHCKNLQLVDLSSNRISGLISPDICPGAESLQELKIPDNLIIGGIPPELSLCPQLKTIDFSLNYLKGSIPAELGKLQNLEQLIAWFNGLEGKIPSELGNCRNLKDLILNNNHLSGEIPTGLFSCSNLEWISLTSNELTGEIPKEFGLLPRLAVLQLGNNSLSGQIPAELANCSTLVWLDLNSNKLTGEIPPRLGRQLGAKSLNGILSGNTLVFVRNVGNSCKGVGGLLEFSGIRPERLQQEPTLKTCDFTRLYSGPVLSLFTKYQTLEYLDLSYNELRGRIPEEFGDMVALQVLELSHNQLSGEIPASFGRLKNLGVFDASYNRLQGHIPDSFSNLSFLVQIDLSYNELTGRIPSRGQLSTLPASQYANNPGLCGVPLPECQSEDQPATSPNVDAGKGRTKPESVSWVNSIVLGVLISIACVCILIVWAIAMRARRKEEEEVKMLNSLQAIHAPTTWKIDKEKEPLSINVATFQRQLRKLKFSQLIEATNGFSAESLIGSGGFGEVFKATLKDGSSVAIKKLIRLSCQGDREFMAEMETLGKIKHGNLVPLLGYCKIGEERLLVYEFMKFGSLEEMLHGRAKMQDCRILTWDERKKIARGAAKGLCFLHHNCIPHIIHRDMKSSNVLLDHDLDARVSDFGMARLISALDTHLSVSTLAGTPGYVPPEYYQSFRCTAKGDVYSFGVVLLELLTGKRPTDKEDFGDTNLVGWVKMKVNDGKQMEVIDPELLSVTKTSDESEAEEVKEMVRYLEITLRCVEEFPSKRPNMLQVVAMLRELMPGSTNGSSNSA 1128
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 16807180 16810566 - CmoCh04G022480.1 Cmo04g02248 381223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g02248 1128 SUPERFAMILY L domain-like 31 260 - -
Cmo04g02248 1128 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 17 1117 - -
Cmo04g02248 1128 Pfam BspA type Leucine rich repeat region (6 copies) 128 231 IPR026906 -
Cmo04g02248 1128 Gene3D Transferase(Phosphotransferase) domain 1 907 1126 - -
Cmo04g02248 1128 Gene3D Ribonuclease Inhibitor 31 142 IPR032675 -
Cmo04g02248 1128 Pfam Brassinosteroid receptor island domain 542 600 IPR045381 -
Cmo04g02248 1128 ProSitePatterns Serine/Threonine protein kinases active-site signature. 955 967 IPR008271 GO:0004672|GO:0006468
Cmo04g02248 1128 SUPERFAMILY L domain-like 583 716 - -
Cmo04g02248 1128 Gene3D Phosphorylase Kinase; domain 1 792 906 - -
Cmo04g02248 1128 Pfam Leucine rich repeat 464 524 IPR001611 GO:0005515
Cmo04g02248 1128 Pfam Leucine rich repeat 246 306 IPR001611 GO:0005515
Cmo04g02248 1128 Pfam Leucine rich repeat 599 640 IPR001611 GO:0005515
Cmo04g02248 1128 PRINTS Leucine-rich repeat signature 172 185 - -
Cmo04g02248 1128 PRINTS Leucine-rich repeat signature 244 257 - -
Cmo04g02248 1128 Pfam Protein kinase domain 833 1110 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo04g02248 1128 PANTHER LEUCINE-RICH RECEPTOR-LIKE KINASE FAMILY PROTEIN 17 1117 - -
Cmo04g02248 1128 ProSiteProfiles Protein kinase domain profile. 831 1117 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo04g02248 1128 MobiDBLite consensus disorder prediction 717 738 - -
Cmo04g02248 1128 SUPERFAMILY Protein kinase-like (PK-like) 812 1113 IPR011009 -
Cmo04g02248 1128 ProSitePatterns Protein kinases ATP-binding region signature. 837 860 IPR017441 GO:0005524
Cmo04g02248 1128 CDD STKc_IRAK 837 1116 - -
Cmo04g02248 1128 SMART serkin_6 831 1117 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo04g02248 1128 ProSiteProfiles Leucine-rich repeat profile. 171 193 IPR001611 GO:0005515
Cmo04g02248 1128 Pfam Leucine rich repeat N-terminal domain 30 68 IPR013210 -
Cmo04g02248 1128 Gene3D Ribonuclease Inhibitor 169 720 IPR032675 -
Cmo04g02248 1128 SUPERFAMILY RNI-like 202 532 - -
Cmo04g02248 1128 Gene3D - 545 601 - -
Cmo04g02248 1128 SMART LRR_typ_2 144 168 IPR003591 -
Cmo04g02248 1128 SMART LRR_typ_2 439 463 IPR003591 -
Cmo04g02248 1128 SMART LRR_typ_2 318 342 IPR003591 -
Cmo04g02248 1128 SMART LRR_typ_2 487 511 IPR003591 -
Cmo04g02248 1128 SMART LRR_typ_2 296 317 IPR003591 -
Cmo04g02248 1128 SMART LRR_typ_2 269 292 IPR003591 -
Cmo04g02248 1128 SMART LRR_typ_2 627 651 IPR003591 -
Cmo04g02248 1128 SMART LRR_typ_2 244 267 IPR003591 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo04g02248 Cmo15g00912 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g02248 Cmo-Chr4:16807180 Cmo16g00143 Cmo-Chr16:650920 2.36E-13 dispersed
Cmo07g00789 Cmo-Chr7:3611442 Cmo04g02248 Cmo-Chr4:16807180 0 transposed
Cmo10g00228 Cmo-Chr10:1003093 Cmo04g02248 Cmo-Chr4:16807180 9.31E-152 transposed
Cmo15g00912 Cmo-Chr15:4628864 Cmo04g02248 Cmo-Chr4:16807180 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74297 PF00069 Pkinase 2.20E-43 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g02248 - - csv:101208987 2048.86