Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g02249 ATGGCGGAAGTAGAATTGCTGGAAATGTTTACAAACCGAGAGCTGGAAGAAGGAGCCATTGGTTCGTCTGATTGGAATCCAACTGATGCTGTGCTGTTCGTTGGACTGAGTTTGGTGCTTGGAATCGCTTGCAGACACTTACTGCGAGGCACCAGAGTTCCTTATACAGTTGCCTTGCTTGTTCTCGGCATAATTCTTGGATCCATTGAATATGGCACACATCATCGATTGGGAAAGATAGGGGATGGCATCCGTCTATGGGCAAAAATTGATCCCGATCTATTATTGGCTGTTTTCCTTCCTGCTCTGCTGTTTGAGAGTTCCTTTTCAATGGAAGTGCACCAAATAAAGAGGTGTCTGGCCCAAATGATCTTATTAGCTGGTCCAGGTGTTTTAATTTCAACGTTCTTGCTTGGATCTGCTTTCAAGCTCACTTTCCCATATAATTGGAATTGGAAAACATCATTGTTGCTTGGGGGACTTCTGAGTGCCACAGATCCTGTGGCTGTAGTAGCTCTAATGAAAGAGCTAGGAGCAAGTAAAAAACTGAATACGATAATAGAAGGAGAATCCTTGATGAATGATGGGACAGCAATTGTGGTTTATCAACTTTTTTATCAAATGGTCCTTGGAAAGAGCTTTAACTGGGGAGCTATAATCAAATATCTCACACAAGTCTCGCTGGGGGCTTTGGGAATTGGTCTTGCATTTGGGATTGCATCTGTTTTATGGCTCGGGTTCATTTTCAACGACACAGTGATAGAGATTGCATTAACACTTGCTGTGAGCTATATTGCTTATTTCACTGCTCAAGAGGGAGCTGATGTTTCTGGTGTTTTGGCGGTGATGACATTAGGAATGTTTCATGCTGCAGTTGCAAGAACAGCTTTTAAGGGCGATGGTCAACAAAGCTTACATCATTTTTGGGAAATGGTTGCATACATAGCGAATACATTAATTTTCATATTGAGTGGAGTCGTTATAGCTGAAGGAGTTCTTGGAAGCGAAGGAATTCTTAATGATGGAGCATCATGGGGCTTCCTCATTCTGCTTTATGCATATGTGCAAGCATCTCGAGTAATGGTTGTTGGAGTACTATATCCATTTCTGCGGTATTTTGGATATGGATTGGATTGGAAAGAAGCCACAATACTGACTTGGTCAGGTCTGCGTGGAGCTGTTGCTCTGGCACTTTCACTGTCAGTGAAGCGATCAAGTGACCAGTCATTGTACATCAGTTCAGAAACTGGAACTCTGTTTGTTTTTTTCACGGGTGGAATCGTATTCATGACACTTATTGTAAATGGTTCGACCACACAATTCATTTTACATCTTCTACATATGGACAAGCTCTCCGTGGCTAAGAAACGCATATTGGATTATACAAAATATGAGATGTTGAACAAAGCATTGGATGCCTTTGGAGATCTTGGAGATGATGAGGAACTGGGACCTGCTGACTGGCCTACAGTAAAAAGACATATCACAAGTCTCAGTCATGTGGAGGGGGAACCGCTGCACCCCCACAATGCATTTGAAAGTGATCAAAACGTTGACTCAATGAATCTGAGAGACATTCGTGTGCGACTTTTGAATGGTGTTCAAGCTGCTTACTGGGGGATGCTTGACGAGGGAAGGATAACACAAACTACTGCAAATATCTTGATGCAATCTGTGGATGAAGCCCTTGACCTGGTTGCAAACGAGCCTTTATGTGATTGGAAAGATTTAAAAGCTAATGTACATTTTCCAAATTATTACAGGTTCCTTCAGACAAGCATTTTCCCTCAGAAGTTGGTTACATACTTCACTGTGGAAAGATTGGAATCTGGATGTTATATTTGTGCTGCATTTCTCCGTGCACACAGAATTGCAAGACAACAGCTTCATGAGTTTATAGGTGATAGCGATATTGCTTCTACTGTTATTAATGAAAGTGAGGCTGAAGGTGAAGAAGCACGAAAATTTCTGGAAGATGTTCGTGAGACATTTCCTCAGGTTTTGCGTGTTGTTAAAACCAGACAAGTAACATACTCAGTGCTCAACCATTTACTTGAATATGTCCAAAATCTAGAGAAGGTTGGCCTACTAGAAGAGAAAGAGATGTTACATCTTCATGGTGCTGTCCAGACTGACTTGAAAAGGCTTCTAAGAAATCCACCTCTGGTAAAGGTTCCAAAAATGCGCAACTTAATGAGTGTCCATCCATTTCTTGGGGCACTTCCTCCTTTAGTACGTGAACCACTTGAACTTTCAACAAAAGAAGTTATGAAACTACGTGGTGTGACACTTTACAAGGAAGGTTCAAAGCCTAGTGGTGTTTGGCTTATATCCAACGGAGTGGTCAAGTGGGAAAGTAGGAGCATGAGAAACAGGTTCTCCCTGCACCCCACATTTACTCATGGATGTACTTTGGGCCTATATGAATTGCTTACTGAGAAGCCATGCTTGTGTGACATGATAGCAGATTCTGTTGTTTTCTCTTTTTTTATTGAACACGACAAGTTTCTTTCGGTACTTAGATCAGATCCTTCAATTGAAGACTTCTTGTGGCAGGTATTACTATTAACCTCAGAACTTTGTTATTTCTAG 2592 41.59 MAEVELLEMFTNRELEEGAIGSSDWNPTDAVLFVGLSLVLGIACRHLLRGTRVPYTVALLVLGIILGSIEYGTHHRLGKIGDGIRLWAKIDPDLLLAVFLPALLFESSFSMEVHQIKRCLAQMILLAGPGVLISTFLLGSAFKLTFPYNWNWKTSLLLGGLLSATDPVAVVALMKELGASKKLNTIIEGESLMNDGTAIVVYQLFYQMVLGKSFNWGAIIKYLTQVSLGALGIGLAFGIASVLWLGFIFNDTVIEIALTLAVSYIAYFTAQEGADVSGVLAVMTLGMFHAAVARTAFKGDGQQSLHHFWEMVAYIANTLIFILSGVVIAEGVLGSEGILNDGASWGFLILLYAYVQASRVMVVGVLYPFLRYFGYGLDWKEATILTWSGLRGAVALALSLSVKRSSDQSLYISSETGTLFVFFTGGIVFMTLIVNGSTTQFILHLLHMDKLSVAKKRILDYTKYEMLNKALDAFGDLGDDEELGPADWPTVKRHITSLSHVEGEPLHPHNAFESDQNVDSMNLRDIRVRLLNGVQAAYWGMLDEGRITQTTANILMQSVDEALDLVANEPLCDWKDLKANVHFPNYYRFLQTSIFPQKLVTYFTVERLESGCYICAAFLRAHRIARQQLHEFIGDSDIASTVINESEAEGEEARKFLEDVRETFPQVLRVVKTRQVTYSVLNHLLEYVQNLEKVGLLEEKEMLHLHGAVQTDLKRLLRNPPLVKVPKMRNLMSVHPFLGALPPLVREPLELSTKEVMKLRGVTLYKEGSKPSGVWLISNGVVKWESRSMRNRFSLHPTFTHGCTLGLYELLTEKPCLCDMIADSVVFSFFIEHDKFLSVLRSDPSIEDFLWQVLLLTSELCYF 863
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 16821621 16850447 + CmoCh04G022490.1 Cmo04g02249 381224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g02249 863 CDD CAP_ED 737 846 IPR000595 -
Cmo04g02249 863 ProSiteProfiles cAMP/cGMP binding motif profile. 737 857 IPR000595 -
Cmo04g02249 863 SUPERFAMILY cAMP-binding domain-like 726 851 IPR018490 -
Cmo04g02249 863 PANTHER - 25 854 - -
Cmo04g02249 863 PANTHER SODIUM/HYDROGEN EXCHANGER 25 854 IPR018422 GO:0006812|GO:0015299|GO:0016021
Cmo04g02249 863 Pfam Sodium/hydrogen exchanger family 32 443 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
Cmo04g02249 863 Gene3D Jelly Rolls 706 859 IPR014710 -
Cmo04g02249 863 Gene3D - 151 203 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g02249 Cmo-Chr4:16821621 Cmo13g00342 Cmo-Chr13:4375945 2.54E-12 dispersed
Cmo04g02249 Cmo-Chr4:16821621 Cmo18g00611 Cmo-Chr18:7418948 6.44E-09 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g02249 - - bhj:120067857 1575.07