Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo04g02255 | ATGGTGCTTCCCAAGACTTTCTCTGAATCGGACGTCTCTGTCCATTCCACCTTTGCCTCTCGCTATGTGCGGGACTCTGCTCCAAGATTCACCATGCCCGAAAACTCCATGCCCAAGGAGGCTGCTTTTCAGATCATCAACGACGAGCTCATGCTCGATGGCAACCCCAGGCTCAATTTGGCTTCCTTCGTCACCACTTGGATGGAGCCCGAGTGCGATAAGCTGGTGATGGACTCTGTCAACAAGAACTACGTCGATATGGACGAGTACCCTGTCACCACCGAGCTTCAGAACCGATGTGTCAACATGATTGCCCATCTCTTTAACGCTCCCTTGGGAGACTCCGACACGGCGGTTGGAGTTGGCACGGTGGGATCCTCGGAGGCCATCATGTTGGCGGGATTGGCCTTCAAGAGGAAGTGGCAGAACAAGCGGAAAGCAGAGGGGAAGCCTTATGATAAGCCGAATATCGTGACAGGGGCGAATGTTCAAGTTTGTTGGGAGAAATTCGCGAGGTACTTTGAAGTGGAGCTGAAGGAAGTGAAGGTGAGAGAAGGGTATTACGTGATGGACCCTGTCAAGGCGGTGGAGATGGTGGATGAGAACACCATCTGCGTCGCCGCCATTTTGGGGTCGACTTACAATGGGGAATTCGAAGATGTGAAGCTGTTGAATGATTTGTTGGTGGAGAAGAACAAGAAAACAGGGTGGGATACTCCAATTCATGTGGATGCTGCCAGCGGTGGATTCATAGCGCCGTTTTTGTATCCAGACCTCGAATGGGACTTCCGGCTTCCGTTGGTGAAGAGCATCAATGTGAGTGGGCACAAATATGGGCTTGTCTACGCCGGAATTGGATGGGTCATTTGGAGAACCAAAGAGGATTTGCCTGAAGAGCTGATTTTCCACATAAATTACCTCGGAGCGGATCAACCCACCTTCACTCTCAACTTCTCCAAAGATCATCCCAATTTCTCTAATCAAACTCCATTTCCCCCCCATCAACAGTCTAATAATTTCCCCATCAATCCGCTTTCAGGGTCAAGCCAAATCATCGCTCAGTATTACCAACTAATCCGCTTGGGTTTCGAGGGGTATCAGAACGTGATGCAGAATTGTCACGACAACGCAATGGTGCTGAAGCAAGGGCTTGAAAACACAGGAAGGTTCAGCATAGCGTCGAAGGACATGGGGGTGCCAGTGGTGGCATTCTCTCTGAAAGACAGAAGCCGGCACGACGAATTCGAGGTGTCGGAAATGCTGCGACGGTTCGGGTGGATCGTACCGGCATACCCAATGCCAGAGGGGGCGAAGCATGTGTCGGTTCTTCGCGTGGTGATCAGAGAAGACTTCTCGCGCACTCTTGCAGAGCGGCTGGTGCTTGATATCATCAAAGTGTTGGCCGAGCTTGATACTCTGCCACCCAAGAACAGTGGAAAATCGACAAGCTTAGAAGACGGCAAAAAAGAGAAGGCAAAGGAAACAGAGAGGGAAATAGCAAGTTATTGGAGGAATATAACCAAGGCTAGGAAGATCAAGCTTGCTGCAAATCAAGCTGGTCCTTCAGTTACCGTAATTGCCAAATGA | 1587 | 50.41 | MVLPKTFSESDVSVHSTFASRYVRDSAPRFTMPENSMPKEAAFQIINDELMLDGNPRLNLASFVTTWMEPECDKLVMDSVNKNYVDMDEYPVTTELQNRCVNMIAHLFNAPLGDSDTAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKVREGYYVMDPVKAVEMVDENTICVAAILGSTYNGEFEDVKLLNDLLVEKNKKTGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRTKEDLPEELIFHINYLGADQPTFTLNFSKDHPNFSNQTPFPPHQQSNNFPINPLSGSSQIIAQYYQLIRLGFEGYQNVMQNCHDNAMVLKQGLENTGRFSIASKDMGVPVVAFSLKDRSRHDEFEVSEMLRRFGWIVPAYPMPEGAKHVSVLRVVIREDFSRTLAERLVLDIIKVLAELDTLPPKNSGKSTSLEDGKKEKAKETEREIASYWRNITKARKIKLAANQAGPSVTVIAK | 528 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 16877971 | 16879762 | - | CmoCh04G022550.1 | Cmo04g02255 | 381230 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo04g02255 | 528 | PANTHER | GLUTAMATE DECARBOXYLASE | 339 | 512 | IPR010107 | GO:0004351|GO:0006536|GO:0030170 | |
Cmo04g02255 | 528 | PANTHER | GLUTAMATE DECARBOXYLASE | 1 | 322 | IPR010107 | GO:0004351|GO:0006536|GO:0030170 | |
Cmo04g02255 | 528 | MobiDBLite | consensus disorder prediction | 482 | 496 | - | - | |
Cmo04g02255 | 528 | Gene3D | - | 1 | 65 | - | - | |
Cmo04g02255 | 528 | PANTHER | GLUTAMATE DECARBOXYLASE | 1 | 322 | - | - | |
Cmo04g02255 | 528 | MobiDBLite | consensus disorder prediction | 476 | 496 | - | - | |
Cmo04g02255 | 528 | SUPERFAMILY | PLP-dependent transferases | 15 | 470 | IPR015424 | - | |
Cmo04g02255 | 528 | Gene3D | - | 66 | 386 | IPR015421 | GO:0003824 | |
Cmo04g02255 | 528 | PANTHER | GLUTAMATE DECARBOXYLASE | 339 | 512 | - | - | |
Cmo04g02255 | 528 | Gene3D | - | 387 | 474 | - | - | |
Cmo04g02255 | 528 | Pfam | Pyridoxal-dependent decarboxylase conserved domain | 347 | 407 | IPR002129 | GO:0016830|GO:0019752|GO:0030170 | |
Cmo04g02255 | 528 | Pfam | Pyridoxal-dependent decarboxylase conserved domain | 33 | 321 | IPR002129 | GO:0016830|GO:0019752|GO:0030170 | |
Cmo04g02255 | 528 | CDD | DOPA_deC_like | 59 | 465 | - | - | |
Cmo04g02255 | 528 | TIGRFAM | Glu-decarb-GAD: glutamate decarboxylase | 16 | 322 | IPR010107 | GO:0004351|GO:0006536|GO:0030170 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo04g02255 | Cmo15g00908 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo04g02255 | Cmo-Chr4:16877971 | Cmo15g00790 | Cmo-Chr15:3875072 | 0 | dispersed | |
Cmo04g02255 | Cmo-Chr4:16877971 | Cmo04g02258 | Cmo-Chr4:16884100 | 0 | proximal | |
Cmo15g00908 | Cmo-Chr15:4596553 | Cmo04g02255 | Cmo-Chr4:16877971 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo04g02255 | K01580 | - | csv:101208026 | 946.036 |