Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g02258 ATGGTGCTCTCCAAAACTTTCTCAGAGTCGGATGTCTCTGTTCATTCCACCTTTGCCTCTCGCTATGTGCGGGACTCTGCTCCAAGATTCACCATGCCCGAAAACTCCATGCCCAAGGAGGCTGCTTTTCAGATCATCAACGACGAGCTCATGCTCGATGGCAACCCCAGGCTCAATTTGGCTTCCTTCGTCACCACTTGGATGGAGCCCGAGTGCGATAAGCTGGTGATGGACTCTGTCAACAAGAACTACGTCGATATGGACGAGTACCCTGTTACCACCGAGCTTCAGAATCGATGTGTCAATATGATTGCCCATCTCTTCAACGCTCCCTTGGGAGATTCCGACACGGCGGTCGGAGTTGGCACGGTGGGATCCTCGGAGGCCATCATGTTGGCGGGATTGGCCTTCAAGAGGAAGTGGCAGAACAAGCGGAAAGCAGAGGGGAAGCCTTATGATAAGCCGAATATCGTGACAGGGGCGAATGTTCAAGTTTGTTGGGAGAAATTCGCGAGGTACTTTGAAGTGGAGCTGAAGGAAGTGAAGGTGAGAGAAGGGTATTACGTGATGGACCCTGTCAAGGCGGTGGAGATGGTGGATGAGAACACCATCTGCGTCGCCGCCATTTTGGGGTCGACTTACAATGGGGAATTCGAAGATGTGAAGCTGTTGAATGATTTGTTGGTGGAGAAGAACAAGAAAACAGGGTGGGATACTCCAATTCATGTGGATGCTGCCAGCGGTGGATTCATAGCGCCGTTTTTGTATCCAGACCTCGAATGGGACTTCCGGCTTCCGTTGGTGAAGAGCATCAATGTGAGTGGGCACAAATATGGGCTTGTCTACGCCGGAATTGGATGGGTCATTTGGAGAACCAAAGAGGATTTGCCTGAAGAGCTGATTTTCCACATAAATTACCTCGGAGCGGATCAACCCACCTTCACTCTCAACTTCTCCAAAGATCATCCCAATTTCTCTAATCAAACTCCATTTCCCCCCCATCAACAGTCTAATAATTTCCCCATCAATCCGCTTTCAGGGTCAAGCCAAATCATCGCTCAGTATTACCAACTAATCCGCTTGGGTTTCGAGGGGTATCAGAACGTGATGCAGAATTGTCACGACAACGCAATGGTGCTGAAGCAAGGGCTTGAAAACACAGGAAGGTTCAGCATAGCGTCGAAGGACATGGGGGTGCCAGTGGTGGCATTCTCTCTGAAAGACAGAAGCCGGCACGACGAATTCGAGGTGTCGGAAATGCTGCGACGGTTCGGGTGGATCGTACCGGCATACCCAATGCCAGAGGGGGCGAAGCATGTGTCGGTTCTTCGCGTGGTGATCAGAGAAGACTTCTCGCGCACTCTTGCAGAGCGGCTGGTGCTTGATATCGTGAAAGTGTTGGCCGAGCTTGATACTCTGCCACCCAAGAACGGTGCAAAATCGAGAAGCTTGGAAAATGGGACTAAGGAGAAGGCAGAGGAAGCAGGGAGGGAAATAGCGAGTTATTGGAGGAATATAACCATGGCTAGGAAGATGAAGCTTGCTGAGACTCAAGCTGGTCCTTCAGTAACAGTCATTGCCAAATAA 1587 50.6 MVLSKTFSESDVSVHSTFASRYVRDSAPRFTMPENSMPKEAAFQIINDELMLDGNPRLNLASFVTTWMEPECDKLVMDSVNKNYVDMDEYPVTTELQNRCVNMIAHLFNAPLGDSDTAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKVREGYYVMDPVKAVEMVDENTICVAAILGSTYNGEFEDVKLLNDLLVEKNKKTGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRTKEDLPEELIFHINYLGADQPTFTLNFSKDHPNFSNQTPFPPHQQSNNFPINPLSGSSQIIAQYYQLIRLGFEGYQNVMQNCHDNAMVLKQGLENTGRFSIASKDMGVPVVAFSLKDRSRHDEFEVSEMLRRFGWIVPAYPMPEGAKHVSVLRVVIREDFSRTLAERLVLDIVKVLAELDTLPPKNGAKSRSLENGTKEKAEEAGREIASYWRNITMARKMKLAETQAGPSVTVIAK 528
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 16884100 16885928 + CmoCh04G022580.1 Cmo04g02258 381233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g02258 528 Gene3D - 387 474 - -
Cmo04g02258 528 Gene3D - 66 386 IPR015421 GO:0003824
Cmo04g02258 528 PANTHER GLUTAMATE DECARBOXYLASE 1 322 IPR010107 GO:0004351|GO:0006536|GO:0030170
Cmo04g02258 528 PANTHER GLUTAMATE DECARBOXYLASE 339 513 IPR010107 GO:0004351|GO:0006536|GO:0030170
Cmo04g02258 528 SUPERFAMILY PLP-dependent transferases 15 470 IPR015424 -
Cmo04g02258 528 Pfam Pyridoxal-dependent decarboxylase conserved domain 347 407 IPR002129 GO:0016830|GO:0019752|GO:0030170
Cmo04g02258 528 Pfam Pyridoxal-dependent decarboxylase conserved domain 33 321 IPR002129 GO:0016830|GO:0019752|GO:0030170
Cmo04g02258 528 CDD DOPA_deC_like 59 465 - -
Cmo04g02258 528 TIGRFAM Glu-decarb-GAD: glutamate decarboxylase 16 322 IPR010107 GO:0004351|GO:0006536|GO:0030170
Cmo04g02258 528 PANTHER GLUTAMATE DECARBOXYLASE 1 322 - -
Cmo04g02258 528 PANTHER GLUTAMATE DECARBOXYLASE 339 513 - -
Cmo04g02258 528 Gene3D - 1 65 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g02258 Cmo-Chr4:16884100 Cmo15g00790 Cmo-Chr15:3875072 0 dispersed
Cmo04g02255 Cmo-Chr4:16877971 Cmo04g02258 Cmo-Chr4:16884100 0 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g02258 K01580 - csv:101208026 946.036