Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g02285 ATGAATGGGAAGGATGAATTTGAAGATGAGTGTAGGACTAGTGATCCTATGAGTATCTCCTCTAGTTGGCAATTTGCTAATGAGTCGATCGGATTTGTTTCGACCGGGAATCCCTCGGTCGTTAGCAATGGAGATCTAGGTGTTTCTTCTTGTCCTTCAACTTCAATGTCGAACTTGTTTACTCCAACCGTGTTGAATGATCATACGAACTCGCAAAGCTCGAGGTTCTGCAGCAGTTTTAATGAACAAAACAGTATAGATGATTCTAATGTGACTGTTGTTGATGGGGAAGGTCTGAGTTCTTTGAGATCTAGTAGTGATAGAATTCTGGGTATGGATTGGAACCAACAAAGTTCATGGATGAAAGGAGTTTTCTCAGGGAATGTTCCTGGAATGTTTCCAGCTAATTTGTCTCAGCTACCAGCTGATTCGGCGTTCATAGAGCGTGCAGCACGGTTTTCTTGCTTCAATGGTGGCGTTTTCGGGGCTCCACCTGCTGGTTCATTTGGTATTTCAGGCTCTAATGGCATTCATTCTAGGGGTGCCTTTGGAAGTCAGGAACTAAACAAGGTTGTGTTGGAGGGTAAAGAAAAGAGTCCACCAAAGACCGAGAAAGAAAGCGAGATGTCTCGAGACAGGGCTAAACAAGGTTGTGTTGGTGAGTCTGGTAATGAATCTGATGAAACTGGGTTTAGTGGCGGTCAAGACGAGCAATGCACGTTGGGAGGTACCATTGCTGAACCATCTCGGGAAGGATTGTGCTTCAAGAAACGGAAAAGGGGCGATCGGAATATGGAACTTGCTCAAGTTAAAGAAGCTTCGAAACAAATTAACGAAACTGCGAAGAACGGGGCATTAACTTGGCAGAACGGAGACAAAGACCAAAATCCAAGTTTTACTACTAACAAGGCTGCTGGGAAGCAAGGAAAACAAGATTCTCAACCGTCGGATGCGCCCAAAGAAGAATATATTCACGTTAGAGCTCGAAGAGGCCAGGCGACGAACAGCCATAGTCTTGCCGAAAGGGTAAGAAGAGAAAAGATAAGTGAAAGAATGAGGCTCCTTCAAGACCTCGTGCCCGGGTGCAGTAAGGTCACTGGCAAAGCTGTAATGCTCGATGAGATCATTAACTATGTTCAATCGCTGCAACGACAAGTCGAGTTTTTGTCAATGAAACTTGCAACAGTTAATCCCAAGCTGGATTTTAACATCGAAGAGCTCCTAACAAAAGAAATCATGCAATCAAAGGCTGGTCCATCCTTATTTGGTTTCCCTCCTGATCTGCCTATGCCTTACCTCCCGCAACATCCGACTCACCATGGAGTTATTCCGCCTTGTATCCCGAACATGGGAAGCTCACCCGACCTGCTACGAAGAACGATTAATTCCCAGTTGACATCACTTGTTGGTGGATTCAAGGAGCCTGTTCAGCTACTGAATGTATGGGAGAACGAGCTCCACAATGTCGTTCCAAGGAACTTCGACGTTGCTGCCCCTCCCAGTGGCCAAGATGTCGATGGCTCTACTCCACCATGCAACAACACCAGAGCAGAACCCTAA 1560 45.77 MNGKDEFEDECRTSDPMSISSSWQFANESIGFVSTGNPSVVSNGDLGVSSCPSTSMSNLFTPTVLNDHTNSQSSRFCSSFNEQNSIDDSNVTVVDGEGLSSLRSSSDRILGMDWNQQSSWMKGVFSGNVPGMFPANLSQLPADSAFIERAARFSCFNGGVFGAPPAGSFGISGSNGIHSRGAFGSQELNKVVLEGKEKSPPKTEKESEMSRDRAKQGCVGESGNESDETGFSGGQDEQCTLGGTIAEPSREGLCFKKRKRGDRNMELAQVKEASKQINETAKNGALTWQNGDKDQNPSFTTNKAAGKQGKQDSQPSDAPKEEYIHVRARRGQATNSHSLAERVRREKISERMRLLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPKLDFNIEELLTKEIMQSKAGPSLFGFPPDLPMPYLPQHPTHHGVIPPCIPNMGSSPDLLRRTINSQLTSLVGGFKEPVQLLNVWENELHNVVPRNFDVAAPPSGQDVDGSTPPCNNTRAEP 519
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 17008547 17012057 - CmoCh04G022850.1 Cmo04g02285 381260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g02285 519 Pfam Helix-loop-helix DNA-binding domain 335 383 IPR011598 GO:0046983
Cmo04g02285 519 MobiDBLite consensus disorder prediction 281 319 - -
Cmo04g02285 519 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 332 382 IPR011598 GO:0046983
Cmo04g02285 519 MobiDBLite consensus disorder prediction 496 519 - -
Cmo04g02285 519 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 38 162 IPR024097 GO:0006355
Cmo04g02285 519 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 184 513 IPR024097 GO:0006355
Cmo04g02285 519 PANTHER TRANSCRIPTION FACTOR BHLH49 38 162 - -
Cmo04g02285 519 PANTHER TRANSCRIPTION FACTOR BHLH49 184 513 - -
Cmo04g02285 519 MobiDBLite consensus disorder prediction 193 215 - -
Cmo04g02285 519 SMART finulus 338 388 IPR011598 GO:0046983
Cmo04g02285 519 MobiDBLite consensus disorder prediction 193 242 - -
Cmo04g02285 519 MobiDBLite consensus disorder prediction 281 313 - -
Cmo04g02285 519 Gene3D - 329 403 IPR036638 GO:0046983
Cmo04g02285 519 CDD bHLH_AtBPE_like 322 407 - -
Cmo04g02285 519 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 330 401 IPR036638 GO:0046983
Cmo04g02285 519 MobiDBLite consensus disorder prediction 222 239 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g02285 Cmo-Chr4:17008547 Cmo18g01098 Cmo-Chr18:11457766 3.22E-72 dispersed
Cmo15g00881 Cmo-Chr15:4461494 Cmo04g02285 Cmo-Chr4:17008547 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9693 PF00010 HLH 6.30E-06 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g02285 - - csv:101216110 838.565