Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g02293 ATGTTGAGTTCAGCAAGCAGCACAGCAATAAAAGCTGCTCCTTTTTTCTTCTTGTCATTTGATGAACCTACAGCAGCAAGTTTAATGGAAATTAGGAGAAAAAGTGGGTTACTGTCTTGCTTGGCTTTGGTTTGGTTATGGGCTTCTGCAACTGCAACTTCAACGGGCATCCGTTTAAACGTTGAAGTTCAAGCTTTGATGGGAATCAAAGCTGGTTTGAAGGATCCTCATTCTGTTCTAGCTTGGGATGAAAATGCTGTGGATCCATGCACTTGGAATTTAATCACTTGCTCTCCTGATAAACTTGTGATTGGCATAGGAGCTCCAAGCCAAAACTTTTCTGGGACACTCTCACCAAGTATTGGAAATTTGACAAACCTTCAATTTTTGCTTCTTCAGAATAACTATATATCAGGAAAAGTTCCAAACGAGATTAGCAAGATACCGAAACTTCACACACTTGATCTTTCAAACAATTTGTTTTCTGGTGAAGTTCCTAGCTCTTTCTCCAATTTGAAGAGCCTCCAATACCTGAGACTCAACAATAACACCTTCTCTGGGACAATCCCATCATCACTGGCTAACATGAACCAGCTTGCCTTGTTGGATCTGTCCTATAATAATTTGAGCGGTCCTCTGCCCAGATTGTTGGCTAAGACATATAACTTTACTGGAAATTCTTTGATTTGTGCCCCTGGCTCTAAGGAAGTATGCTACGGAACAACTCCATTGCCACTTTCTTTCGCTGTCACTAATTCCACATACTCCCAACCTCCTAGGAGACATAAAGGCCAGAGAATTGCTCTAGTCATTGGCCTCAGCTTGGCCTGCATCTGTCTGTTAACTCTTGCATATGGTTTCTTTATCTGGCGGAAGCATAGGCGCAACCAGCAAATATTCTTTGAAACTAATGATCGGCACCATGAAGAACTTAGCCTTGGAAACATAAAGAGGTTTCAGTTCAGGGAACTTCGGAACGCCACTCACAATTTCAGCAGTAAAAACTTGATTGGAAAAGGTGGGTTTGGAAATGTTTACAGAGGATATCTACAAGATGGCACCATTATAGCTGTCAAGAGACTCAAAGATGGGAATGCTATGAGAGGAGAGACCCAATTTCAGACTGAAGTGGAGATGATAAGCTTGGCAGTGCATAGGAACCTCCTCAAGCTGTATGGTTTCTGTATGACAGAAACTGAGAGGCTTTTGGTCTATCCATATATGTCTAATGGCAGTGTTGCTACCCGTCTTAAAGCAAAACCAGCTCTGGATTGGGGTACAAGGAAGAGAATTGCCTTGGGAGCTGCAAGGGGCTTGTTATACTTGCATGAGCAGTGTGATCCAAAAATAATTCACAGAGATGTGAAAGCTGCAAATATACTGCTTGATGATTTCTGTGAGGCAGTAGTCGGTGATTTTGGGCTCGCAAAGCTACTAGATCACAGTGATTCACATGTCACTACTGCTGTGAGAGGAACTGTTGGGCACATTGCACCAGAGTATCTGTCAACCGGCCAATCCTCAGAGAAAACTGATGTTTTCGGGTTTGGAATTCTATTACTTGAGCTTGTATCAGGTCAAAGAGCTCTTGAATTTGGAAAAGCAGCAAACCAAAAGGGTGCAATACTAGACTGGATAAAGAAGCTACACCAAGAAAAGAAGTTAGAAATGCTTGTTGACAAAGACTTGAGAAGCAATTATGACCCAATTGAAATTGAAGAAATTGTTCGAGTAGCTCTCTTGTGCATCCAATATCTTCCAAGCAATAGGCCAAAGATGTCTGAAGTGGTCAGGATGCTTGAAGGAGATGGGCTTGCAGAGAAATGGGAAGCTTCCCAAAGAGCAGAAGCAAGCAGGGTGAGAGCCAATGAGTTCTCCTCTTCAGAACGTTACTCTGATCTTACTGACGACGCTTCATTGTTTGCTCAAGCAATAGAGCTCTCAGGACCAAGATAA 1956 42.43 MLSSASSTAIKAAPFFFLSFDEPTAASLMEIRRKSGLLSCLALVWLWASATATSTGIRLNVEVQALMGIKAGLKDPHSVLAWDENAVDPCTWNLITCSPDKLVIGIGAPSQNFSGTLSPSIGNLTNLQFLLLQNNYISGKVPNEISKIPKLHTLDLSNNLFSGEVPSSFSNLKSLQYLRLNNNTFSGTIPSSLANMNQLALLDLSYNNLSGPLPRLLAKTYNFTGNSLICAPGSKEVCYGTTPLPLSFAVTNSTYSQPPRRHKGQRIALVIGLSLACICLLTLAYGFFIWRKHRRNQQIFFETNDRHHEELSLGNIKRFQFRELRNATHNFSSKNLIGKGGFGNVYRGYLQDGTIIAVKRLKDGNAMRGETQFQTEVEMISLAVHRNLLKLYGFCMTETERLLVYPYMSNGSVATRLKAKPALDWGTRKRIALGAARGLLYLHEQCDPKIIHRDVKAANILLDDFCEAVVGDFGLAKLLDHSDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELVSGQRALEFGKAANQKGAILDWIKKLHQEKKLEMLVDKDLRSNYDPIEIEEIVRVALLCIQYLPSNRPKMSEVVRMLEGDGLAEKWEASQRAEASRVRANEFSSSERYSDLTDDASLFAQAIELSGPR 651
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 17046288 17050416 - CmoCh04G022930.1 Cmo04g02293 381268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g02293 651 Pfam Protein kinase domain 332 598 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo04g02293 651 Gene3D Transferase(Phosphotransferase) domain 1 408 620 - -
Cmo04g02293 651 SUPERFAMILY Protein kinase-like (PK-like) 309 601 IPR011009 -
Cmo04g02293 651 Gene3D Ribonuclease Inhibitor 59 240 IPR032675 -
Cmo04g02293 651 Pfam Leucine rich repeat N-terminal domain 60 98 IPR013210 -
Cmo04g02293 651 Pfam Leucine rich repeat 149 209 IPR001611 GO:0005515
Cmo04g02293 651 SMART serkin_6 331 600 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo04g02293 651 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 34 651 - -
Cmo04g02293 651 ProSiteProfiles Protein kinase domain profile. 331 610 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo04g02293 651 ProSitePatterns Protein kinases ATP-binding region signature. 337 359 IPR017441 GO:0005524
Cmo04g02293 651 Gene3D Phosphorylase Kinase; domain 1 300 407 - -
Cmo04g02293 651 PANTHER PROTEIN NSP-INTERACTING KINASE 2-LIKE 34 651 - -
Cmo04g02293 651 ProSitePatterns Serine/Threonine protein kinases active-site signature. 450 462 IPR008271 GO:0004672|GO:0006468
Cmo04g02293 651 SUPERFAMILY L domain-like 62 228 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo04g01633 Cmo04g02293 CCT
Cmo04g02293 Cmo04g01633 ECH
Cmo04g01633 Cmo04g02293 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g01633 Cmo-Chr4:8339374 Cmo04g02293 Cmo-Chr4:17046288 0 dispersed
Cmo04g02293 Cmo-Chr4:17046288 Cmo04g02959 Cmo-Chr4:20940568 0 dispersed
Cmo04g02293 Cmo-Chr4:17046288 Cmo18g01090 Cmo-Chr18:11413289 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74298 PF00069 Pkinase 1.50E-44 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g02293 - - csv:101222667 1100.5