Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g02298 ATGGGTGTTGCTGTGGCTGTTGATGTTGAAACCACTCGGTTTCATGTTCTTGCTGTTGATGATAGCTTCATCGATCGGAAATTGATCGAGCGCCTCCTCAAAACCTCCTCCTATCACGTTACTGCTGTTGATTCCGGTACCAAGGCGTTGGAATTTCTCGGTCTTGTTGAAGATCCTGATCTCGATGATGATGTTGATGATGAACAACACTCCAAACTCCCCCCTTCAATTCAAGAAGTGGATGTGAATTTGATCATCACGGATTACAGTATGCCTGGAATGAGTGGCTACGATCTCCTCAGGAAGATCAAGGAATCGAAATCTCTTAAAGACATACCAGTTGTGATCATGTCCTCTGAGAATGTTCCTTCAAGAATCAACAGATGCTTGGAAGAAGGAGCGGAAGAGTTCTTCCTCAAACCAGTTCAATTGTCCGATGTGAGGAAACTGAGACCTCATTTGATTAAAGAAAAATCCACAAGGAATTGA 489 43.35 MGVAVAVDVETTRFHVLAVDDSFIDRKLIERLLKTSSYHVTAVDSGTKALEFLGLVEDPDLDDDVDDEQHSKLPPSIQEVDVNLIITDYSMPGMSGYDLLRKIKESKSLKDIPVVIMSSENVPSRINRCLEEGAEEFFLKPVQLSDVRKLRPHLIKEKSTRN 162
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 17099257 17100562 + CmoCh04G022980.1 Cmo04g02298 381273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g02298 162 PANTHER RESPONSE REGULATOR ARR8, PUTATIVE-RELATED 8 160 - -
Cmo04g02298 162 ProSiteProfiles Response regulatory domain profile. 15 155 IPR001789 GO:0000160
Cmo04g02298 162 SUPERFAMILY CheY-like 13 151 IPR011006 -
Cmo04g02298 162 Pfam Response regulator receiver domain 77 149 IPR001789 GO:0000160
Cmo04g02298 162 Gene3D - 15 161 - -
Cmo04g02298 162 PANTHER TWO-COMPONENT RESPONSE REGULATOR 8 160 IPR045279 GO:0009736
Cmo04g02298 162 CDD REC_typeA_ARR 16 150 - -
Cmo04g02298 162 SMART REC_2 14 151 IPR001789 GO:0000160
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g02298 Cmo-Chr4:17099257 Cmo14g00521 Cmo-Chr14:2633524 1.74E-69 dispersed
Cmo15g00865 Cmo-Chr15:4388575 Cmo04g02298 Cmo-Chr4:17099257 4.36E-88 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9695 PF00072 Response_reg 5.00E-16 CL0304 Cmo TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g02298 K14492 - csv:101210839 241.891