Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo04g02298 | ATGGGTGTTGCTGTGGCTGTTGATGTTGAAACCACTCGGTTTCATGTTCTTGCTGTTGATGATAGCTTCATCGATCGGAAATTGATCGAGCGCCTCCTCAAAACCTCCTCCTATCACGTTACTGCTGTTGATTCCGGTACCAAGGCGTTGGAATTTCTCGGTCTTGTTGAAGATCCTGATCTCGATGATGATGTTGATGATGAACAACACTCCAAACTCCCCCCTTCAATTCAAGAAGTGGATGTGAATTTGATCATCACGGATTACAGTATGCCTGGAATGAGTGGCTACGATCTCCTCAGGAAGATCAAGGAATCGAAATCTCTTAAAGACATACCAGTTGTGATCATGTCCTCTGAGAATGTTCCTTCAAGAATCAACAGATGCTTGGAAGAAGGAGCGGAAGAGTTCTTCCTCAAACCAGTTCAATTGTCCGATGTGAGGAAACTGAGACCTCATTTGATTAAAGAAAAATCCACAAGGAATTGA | 489 | 43.35 | MGVAVAVDVETTRFHVLAVDDSFIDRKLIERLLKTSSYHVTAVDSGTKALEFLGLVEDPDLDDDVDDEQHSKLPPSIQEVDVNLIITDYSMPGMSGYDLLRKIKESKSLKDIPVVIMSSENVPSRINRCLEEGAEEFFLKPVQLSDVRKLRPHLIKEKSTRN | 162 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 17099257 | 17100562 | + | CmoCh04G022980.1 | Cmo04g02298 | 381273 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo04g02298 | 162 | PANTHER | RESPONSE REGULATOR ARR8, PUTATIVE-RELATED | 8 | 160 | - | - | |
Cmo04g02298 | 162 | ProSiteProfiles | Response regulatory domain profile. | 15 | 155 | IPR001789 | GO:0000160 | |
Cmo04g02298 | 162 | SUPERFAMILY | CheY-like | 13 | 151 | IPR011006 | - | |
Cmo04g02298 | 162 | Pfam | Response regulator receiver domain | 77 | 149 | IPR001789 | GO:0000160 | |
Cmo04g02298 | 162 | Gene3D | - | 15 | 161 | - | - | |
Cmo04g02298 | 162 | PANTHER | TWO-COMPONENT RESPONSE REGULATOR | 8 | 160 | IPR045279 | GO:0009736 | |
Cmo04g02298 | 162 | CDD | REC_typeA_ARR | 16 | 150 | - | - | |
Cmo04g02298 | 162 | SMART | REC_2 | 14 | 151 | IPR001789 | GO:0000160 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo04g02298 | Cmo-Chr4:17099257 | Cmo14g00521 | Cmo-Chr14:2633524 | 1.74E-69 | dispersed | |
Cmo15g00865 | Cmo-Chr15:4388575 | Cmo04g02298 | Cmo-Chr4:17099257 | 4.36E-88 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
9695 | PF00072 | Response_reg | 5.00E-16 | CL0304 | Cmo | TR |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo04g02298 | K14492 | - | csv:101210839 | 241.891 |