Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g02313 ATGGCATCTGGAAATCCTTGTTTTGATGATGTGCGGAGCAAAGCAGAGGTTATTGATCCTCCACAAAATCAAGATATGATGGACATCAGGGAAGCTGTGGATGGTCCAACTCAAAATGAACTTAAACCTAATGTTGCTGTTTCCGGCAGCGTTCGCCAGCTTTTGGAATGCCCAGTGTGTTTGAATGCAATGTACCCTCCAATACATCAGTGTTCGAATGGTCACACACTGTGTTCGGATTGCAAGCCTAGGGTGCACAATCGGTGCCCTACGTGCAGGCACGAACTTGGCAATATTCGATGCCTTGCATTGGAGAAGGTGGCTGCATCACTAGAACTTCCATGTAAATATCAGAGCTATGGTTGCATTGGCATATATCCTTATTACAGCAAGGTCAAACATGAATCCCAATGTGTTTATAGACCTTATAGTTGTCCATACGCTGGATCAGAATGTTTGGTCGTTGGTGATATACCCTATTTGGTGGCCCATCTCAAAGATGATCATAAAGTAGACATGCACAGTGGAAGCACATTCAACCATCGATACGTAAAATCAAACCCTCAAGAAGTCGAAAACGCAACATGGATGCTAACGGTTTTCAGTTGCTTTGGTCATTACTTTTGCCTGCATTTCGAAGCTTTCCAGCTTGGAATGGCTCCAGCATACATAGCATTCTTGCGGTTCATGGGCGATGACGATGATGCAAAGAACTACAGCTATAGTCTCGAAGTGGGTGGAAATGGGAGGAAGATAGTATGGCAAGGGGTGCCCAGAAGCATCAGGGACAGCCATCGAAAAGTTCGGGATAGTTTCGACGGGCTCATTATCCAATGTAACATGGCGCTCTTCTTCTCTGGTGGAGACCGTAAGGAACTGAAGCTTAGGGTGACTGGTAGAATTTGGAAAGAACAGGAGACTGGGAGAACAGCTTATGATGAAACTTTCAGTTCAAATCCTATCTTCTTGTCCAGTAGTCGGTTGCCTTTTTGTAGAGTAAATGAGGCTTTCTAA 1014 44.67 MASGNPCFDDVRSKAEVIDPPQNQDMMDIREAVDGPTQNELKPNVAVSGSVRQLLECPVCLNAMYPPIHQCSNGHTLCSDCKPRVHNRCPTCRHELGNIRCLALEKVAASLELPCKYQSYGCIGIYPYYSKVKHESQCVYRPYSCPYAGSECLVVGDIPYLVAHLKDDHKVDMHSGSTFNHRYVKSNPQEVENATWMLTVFSCFGHYFCLHFEAFQLGMAPAYIAFLRFMGDDDDAKNYSYSLEVGGNGRKIVWQGVPRSIRDSHRKVRDSFDGLIIQCNMALFFSGGDRKELKLRVTGRIWKEQETGRTAYDETFSSNPIFLSSSRLPFCRVNEAF 337
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 17203855 17207022 + CmoCh04G023130.1 Cmo04g02313 381288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g02313 337 Pfam Seven in absentia protein family 99 298 IPR018121 GO:0005737|GO:0006511|GO:0007275
Cmo04g02313 337 SUPERFAMILY RING/U-box 50 97 - -
Cmo04g02313 337 SUPERFAMILY TRAF domain-like 110 302 - -
Cmo04g02313 337 PANTHER E3 UBIQUITIN-PROTEIN LIGASE DIS1 13 305 - -
Cmo04g02313 337 CDD Sina 171 299 - -
Cmo04g02313 337 CDD RING-HC_SIAHs 55 93 - -
Cmo04g02313 337 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 166 298 IPR008974 GO:0005515
Cmo04g02313 337 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 110 165 IPR013083 -
Cmo04g02313 337 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 13 305 - -
Cmo04g02313 337 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 14 109 IPR013083 -
Cmo04g02313 337 ProSiteProfiles Zinc finger RING-type profile. 57 93 IPR001841 -
Cmo04g02313 337 ProSiteProfiles Zinc finger SIAH-type profile. 110 170 IPR013010 GO:0008270
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo04g01413 Cmo04g02313 CCT
Cmo04g02313 Cmo15g00849 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g02313 Cmo-Chr4:17203855 Cmo18g00871 Cmo-Chr18:10014647 0 dispersed
Cmo15g00849 Cmo-Chr15:4296437 Cmo04g02313 Cmo-Chr4:17203855 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g02313 K04506 - csv:101220834 610.912