Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g02315 ATGTCAACCCAGCCGAAGAACTCCGATTCAGGCGTTTGTCTCTTCGATCTTCTATTTCCAGATTCAGAAATGCGAGGCTGGGACTGGAGTCGAATGCCCTCTGATTCAGAAACGCAAAGGTGGAACTGGAAAAAGGATCAACAGCTCTCTGGCCCCCAGAAAAGGTTGGAAGATCTGTTGCGCCAATCTGGTAATAAGTTATGTGCAGATTGTGGCTCACCAGATCCGAAATGGGTATCGTTAAATTTGGGAGTATTTATCTGTATAAAGTGTTCTGGAGTACACAGAAGTCTTGGAGTTCATATCTCTAAGGTTTTCTCAGTGAAGCTAGATAATTGGACGGATGAACAAGTCAATACTTTTATAAGCATGGGTGGAAACGCAGATGTAAACAAGAAATATGAAGCCGGCATCATAGATTTGACCAGAAAACCAAAACCAGATTCCTGTATAGAGGAGCGCTTTGAGTTTATAAGGAGAAAGTATGAACTGCTACAATTTTATAACGGCAATGGTCATAATTCTAGTGATGGCTCAGTTAATAAAAGGATTTCACCATGCTCTCAAATTAACTCTTCAAGCAAGAATGGTTCCCAGGACAAAAGGCACTATGAGAAACTAGCTACTAGGCATCGCATTGCGAATGCGTTTCGTAACAGCCGAGTTAGAAGAGATAGTGACCACAAGAGTTTCGACAAGAGCAATCCTTCAGTCTCAAGACTAGCGTCAGCAGGTATGGTCGAGTTCGTCGGGTTGGTTAAGGTCAATGTGGTTAGAGGCACGAACCTAGCTATTAGAGACGTGGTGTCCAGTGATCCCTATGTAATTCTCGTATTGGGTCACCAATCGGTGAGGACTCGCGTCATAAAGAGCAACCTTAACCCAGTTTGGAATGAGAGCCTAATGTTGTCGATTCCCGAACATATACCTCCGCTAAAAGTGCTTGTCTATGATAAGGACACATTTTCCACTGATGACTTCATGGGCGAGGCCGAAATCGACATTCAACCATTGGTTGCAGCCACAAGGGCGTACGAGAAGTCGACAATTGATGAATCAATGCAGCTGGGAAAATGGGTGGCAAGTAATGACAATACGTTGGTAAAAGATGGAATCATTAACCTTGTAGATGGAAAGGTTAGACAGGATATATCTCTTAGATTGCAGAATGTGGAGAGAGGTGTTCTTGAGGTTGAGCTAGAATGCATTCCACTCACACAATAG 1224 43.3 MSTQPKNSDSGVCLFDLLFPDSEMRGWDWSRMPSDSETQRWNWKKDQQLSGPQKRLEDLLRQSGNKLCADCGSPDPKWVSLNLGVFICIKCSGVHRSLGVHISKVFSVKLDNWTDEQVNTFISMGGNADVNKKYEAGIIDLTRKPKPDSCIEERFEFIRRKYELLQFYNGNGHNSSDGSVNKRISPCSQINSSSKNGSQDKRHYEKLATRHRIANAFRNSRVRRDSDHKSFDKSNPSVSRLASAGMVEFVGLVKVNVVRGTNLAIRDVVSSDPYVILVLGHQSVRTRVIKSNLNPVWNESLMLSIPEHIPPLKVLVYDKDTFSTDDFMGEAEIDIQPLVAATRAYEKSTIDESMQLGKWVASNDNTLVKDGIINLVDGKVRQDISLRLQNVERGVLEVELECIPLTQ 407
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 17213598 17223289 + CmoCh04G023150.1 Cmo04g02315 381290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g02315 407 ProSiteProfiles C2 domain profile. 232 349 IPR000008 -
Cmo04g02315 407 Pfam C2 domain 252 342 IPR000008 -
Cmo04g02315 407 CDD C2_ArfGAP 250 394 - -
Cmo04g02315 407 PRINTS HIV Rev interacting protein signature 65 84 IPR001164 GO:0005096
Cmo04g02315 407 PRINTS HIV Rev interacting protein signature 84 101 IPR001164 GO:0005096
Cmo04g02315 407 PRINTS HIV Rev interacting protein signature 105 126 IPR001164 GO:0005096
Cmo04g02315 407 MobiDBLite consensus disorder prediction 218 237 - -
Cmo04g02315 407 CDD ArfGap 56 162 - -
Cmo04g02315 407 ProSiteProfiles ARF GTPase-activating proteins domain profile. 53 175 IPR001164 GO:0005096
Cmo04g02315 407 SUPERFAMILY ArfGap/RecO-like zinc finger 53 169 IPR037278 -
Cmo04g02315 407 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 1 407 IPR044518 GO:0005096|GO:0005543
Cmo04g02315 407 MobiDBLite consensus disorder prediction 218 234 - -
Cmo04g02315 407 Pfam Putative GTPase activating protein for Arf 54 168 IPR001164 GO:0005096
Cmo04g02315 407 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 248 343 IPR035892 -
Cmo04g02315 407 SMART arf_gap_3 53 176 IPR001164 GO:0005096
Cmo04g02315 407 Gene3D Arf GTPase activating protein 34 175 IPR038508 -
Cmo04g02315 407 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD11-RELATED 1 407 - -
Cmo04g02315 407 SMART C2_3c 252 347 IPR000008 -
Cmo04g02315 407 Gene3D C2 domain 250 406 IPR035892 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g02315 Cmo-Chr4:17213598 Cmo07g00063 Cmo-Chr7:358765 1.62E-116 dispersed
Cmo04g01412 Cmo-Chr4:7187078 Cmo04g02315 Cmo-Chr4:17213598 1.01E-180 transposed
Cmo18g00872 Cmo-Chr18:10020555 Cmo04g02315 Cmo-Chr4:17213598 3.64E-172 transposed
Cmo15g00846 Cmo-Chr15:4284174 Cmo04g02315 Cmo-Chr4:17213598 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g02315 K12486 - csv:101215531 716.072