Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g02357 ATGATGTCCATCATCAACCAGGATCACTGCCCACTCCAAGACGTCAACCACCGCCTCGCCGCCGCTTCCCCCGATCTCGCCGCCGCGGTTCCCGGCTTCGGCGGCGGTGGAGTCCACCGCAAGAAGAGGATGGCCCGCCAGCGCCGCTCTTCTTCTAATCTTCACTTCTCCTTTCCTCCTTCTTCTTCTTCCGCCCACCTCCCTCCCCCTCGGGTAATTGATCCAAGAAGGCTGAAGTTTCTTTTTCAGAAGGAGCTGAAGAACAGTGATGTTAGCTCTCTTAGGAGAATGATACTCCCAAAGAAAGCAGCTGAAACTCACCTCCCAACTTTGGAGTCTAAAGAAGGAATCATCATCACCATGGATGACTTGGATGGAGTCCATGTTTGGAACTTTAAATATAGGTTCGGTTCGGCTCGGTTCCGTTCCGTTCGGTTTTGGCCGAATAACAATAGTAGAATGTACGTACTTGAAAACACGGGGGACTTCGTCAACGCCCATGGCATACAACTAGGAGATTTCATCTTGGTTTACCAAGATTTTGAAGATCATAGCTACGTCATTCAAGCAAAAAAGGCATCCGATCCAGAAATATATTCCGACATAGCAAATAGTTGCGTTATGAATGGCGATATTGTGTTTCAAGACTTCAATGCTAGCAAAGCTGCTAACTCTATGTACGTGCCTAGTTCAACTATGGACGATCCCGTGTCATCGTTTATCTACGATACTAGCTCAGCTTTCGATAACGATTCGTCGTTTGACTTTATGAGTAGCTCAATGACCAACTACTCGAGAATGGGAGGTATCGAAGGCTTTGGATCAGTCGAGAACTTGTCGCTCGATGACTTCTACTAA 858 47.55 MMSIINQDHCPLQDVNHRLAAASPDLAAAVPGFGGGGVHRKKRMARQRRSSSNLHFSFPPSSSSAHLPPPRVIDPRRLKFLFQKELKNSDVSSLRRMILPKKAAETHLPTLESKEGIIITMDDLDGVHVWNFKYRFGSARFRSVRFWPNNNSRMYVLENTGDFVNAHGIQLGDFILVYQDFEDHSYVIQAKKASDPEIYSDIANSCVMNGDIVFQDFNASKAANSMYVPSSTMDDPVSSFIYDTSSAFDNDSSFDFMSSSMTNYSRMGGIEGFGSVENLSLDDFY 285
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 17573407 17575987 - CmoCh04G023570.1 Cmo04g02357 381332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g02357 285 ProSiteProfiles B3 DNA-binding domain profile. 82 194 IPR003340 GO:0003677
Cmo04g02357 285 SUPERFAMILY DNA-binding pseudobarrel domain 80 187 IPR015300 -
Cmo04g02357 285 SMART B3_2 82 194 IPR003340 GO:0003677
Cmo04g02357 285 Gene3D - 78 205 IPR015300 -
Cmo04g02357 285 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 39 285 IPR044800 GO:0003700
Cmo04g02357 285 Pfam B3 DNA binding domain 82 190 IPR003340 GO:0003677
Cmo04g02357 285 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR FUS3 39 285 - -
Cmo04g02357 285 MobiDBLite consensus disorder prediction 33 71 - -
Cmo04g02357 285 CDD B3_DNA 80 192 IPR003340 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g02357 Cmo-Chr4:17573407 Cmo17g01215 Cmo-Chr17:9708753 2.70E-36 dispersed
Cmo04g02357 Cmo-Chr4:17573407 Cmo15g00809 Cmo-Chr15:4009382 7.51E-117 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9701 PF02362 B3 2.80E-14 CL0405 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g02357 - - csv:101222512 355.91