Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g02359 ATGTTATCGATTGAGAGTGATTGGGTAAAGCTTGATATGAAGCTTTCAACATCAGGGTTTGGTCAGCAGGATCACGAAGGAGGGGAAAAGAAATGCTTGAATTCAGAGCTATGGCATGCATGCGCGGGGCCCCTTGTGTCCCTCCCAACTTCTGGGACTCGGGTTGTCTACTTCCCTCAGGGGCACAGCGAACAGGTTGCTGCCACAACCAACAAAGAAGTTGATGGGCATATCCCGAATTACCCGAACCTGCCTCCCCAGTTGATATGTCAACTTCACAACGTTACGATGCATGCAGATGTGGAAACGGATGAAGTATACGCTCAAATGACATTACAGCCGCTGACTGCACAAGAGCAAAAGGATACATTTCTACCTATGGAATTGGGGATTCCAAGTAGACAGCCAACAAATTACTTTTGCAAGACGTTGACTGCAAGTGATACGAGCACTCATGGAGGATTCTCTGTACCTCGTCGTGCGGCTGAGAAAGTTTTTCCTCCACTGGACTTCTCACAGCAGCCACCGGCACAAGAGCTGATTGCACGGGATCTTCATGATGTTGAATGGAAGTTTAGGCATATTTTTCGAGGCAAGTCCCCTTATGTTCTGTCCATTTGTGGAAATAAGTGCCAAAGTTTCTCTGTTGAAGGACAGCCAAAACGACATCTTCTTACAACTGGTTGGAGTGTGTTTGTTAGTGCCAAAAGATTGGTTGCTGGGGATTCTGTACTTTTTATATGGAACGAAAAAAATCAGCTTCTTTTGGGTATACGCCGTGCCACAAGACCACAAACTGTGATGCCCTCCTCTGTTTTATCAAGTGATAGCATGCACATTGGACTCCTTGCGGCTGCTGCTCATGCTGCCGCAACCAATAGCTGTTTCACAGTTTTCTACAACCCCAGGGCTAGCCCATCAGAGTTTGTCATCCCTCTGACAAAATATGTTAAAGCTGTATTTCATACCCGTGTTTCAGTAGGGATGCGTTTTCGGATGCTTTTTGAGACTGAAGAGTCGAGCGTTCGAAGGTACATGGGTACTATAACTGGAATAAGTGATCTCGATCCTGTTCGTTGGTCGAATTCTCATTGGCGTTCTGTCAAGGTGTTTCAGCTTTATTTCTACAACAGTTCCACAAAAACACTTGCTCCATTTGCTATCACATTATCTTTCTCTCTACTTAATGTAGTACGATATGCTAAGATTTTCGCCTCAAGTAGGAATGACTATTTTCTCTACTGGTGCTCAAATGATTTTGTTCTAAAACTTCAGCAGTTCAGTGTCAGCTTTTCTACTATGAAGGTCGGGTGGGATGAGTCAACAGCTGGGGAGAGGCAGCCAAGGGTATCGTTGTGGGAAATTGAGCCGTTAACTACATTTCCGATGTACCCTTCCCTTTTTCCGCTTCGATTGAAACGTCCATGGCATCCTGGAGTCTCGTCTGTTCATGGGATTGCTTATGCTCACGGGTCACGACGTTTTGTAATGGTCTATTTCCTTACAGATAACAGAGATGATGCATCGAATGGCTTAATGTGGCTACGGGGAGGAGTCGGGGAACAAGCTCTACACTCGTTGAATTTGCAATCCGCGGGTTCACTGCCCTGGTTGCAGCAGAGACTTGATTCTTCCATGTTTGGAAATGATCATAACCAACAGTATCAAGCCATGTTGGCTGCTGGAATGCCGAACCTTGGAGGTGTCGATATGCTGAGACAGCAAATTATGCATCTTCAACAGCCGTTCCAGTACGCTCAACAGGCAGGCCTCCATAATTCTCTGTTGCAGCTGCAACAACAGCAATTGGTTCAACAATCTATGCCTCAGAACATCCTGCAAGCACCAACCCAAGTTATGGCAGAAAACCTACCCCAACATATTCTTCAGCAAACGCTACAAAATCAACCCGAGGATCTGCCGAACCAGCAACAGCATACGTATCACGATACCGTTCAGGTTCAAAGCAATCAATTTCATCAGGGCGGGCATTCAAATGTGCCATCGCCCACGTTTCCCAGATCAAACCTTATGGATTCGAATTCAAATTACCCAGAATCCATTTCCTCTAGAAGAAACATAATTGCTTCATCATGTGCTGAAGGGACTGGAAATCTTTCCAATATTTATAGAAGCGGGCAATCGATCTTAACCGAGCAGTTACCTCAACAATCTCCTGTTTCTAAGAACGCTCACTCACCGGTTGACGCTCACCCAAACTCGATGTCCTTTCCATTTTCTGGTAGAGACTCGATTTTGGAGCTGGGAAATTGTAATTCAGATTCTCCAAGTCCTACACTTTTTGGTGTTAATATTGATTCATCTGGGCTTCTGCTTCCCTCTAATGTGCCCACTTATGCTTCTCCATCAATTGCTCCTGATTCAACCTCAATGCCACTGGGAGATTCTGGATTTCAGAACTCTTTGTACAATTGTGTTCAAGGCTCTTCCGAGTTATTGCACAACTCGGGGCAAGTTGATCCGTCGAATCCAACTCAGACATTTGTGAAGGTTTACAAAACCGGGTCCATTGGACGTTCGCTAGACATCTCCCGGTTCAGTAGCTATCAGGAGCTGCGAGAGGAGCTGGCTCAGATGTTTGGCATAGAGGGACAGTTGGAAGACCCTCGTAGATCAGGCTGGCAGCTTGTATTTGTCGACAGGGAGAACGATGCACTTCTCCTTGGAGACGACCCTTGGGAGGCGTTTGTCAATAATGTTTGGTATATCAAGATACTTTCTCCTCAAGACGTTCAGGAACTAAGGGAACAGGTAATCGAGTCCTTCAACCCTATCGATGGTCAGCGACTAACCAGTGGTGGCAACGAAGCCGAAAATGTTTCGGGGCTACCGTCTGTTGACAGAGATCAGGATGAAGCCTCACTCTGTACTTCAATGGCGGAATTAAGCCCAATCTCAGTCTCGAACCTCAGTAATCGTATCCATTTCTCTTCTTCTTCTCCTCCTATAAACTCCTCCCAATTGTTCAGCATCACAGCCAAGCGTTGTAGCAATTGCAGAAGCATAAGCAGAAGATTAGGGCTGGGATTGATAGCTTTAATGGCGTCGTCGTCTGTAGCCTCGACGCCTGTGAGAATAGCGAATGCTTTGGATCTGAAATTGATAGCGCCGGAGCAGAGCTTCGAGGAGGCGGAGAGCGGAATCAGAGGCCATGCGGAAGCGGTTTTGCAGGTGAGAGGTTTAATTGAATCGGAGTCTTGGAAGGAAGCGCAGAAGCAGTTGAGAACCAGTTCGCCGCTGCTGAAACAGGATCTGTACACTATAATTGAATATAAACCGCCTGCCGAGCGACCTCCTCTCAGGAAACTCTATTCTCTTCTCTTCAACAATGTTACTCGAATGGATTATGCAGCGAGAGATAAAGATGCGGAACGAGTTCGGCAGTGCTACGATAACATTGTGATGGCCATTTCTGACATTTTATCCAGAATTTAG 3456 46.09 MLSIESDWVKLDMKLSTSGFGQQDHEGGEKKCLNSELWHACAGPLVSLPTSGTRVVYFPQGHSEQVAATTNKEVDGHIPNYPNLPPQLICQLHNVTMHADVETDEVYAQMTLQPLTAQEQKDTFLPMELGIPSRQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHDVEWKFRHIFRGKSPYVLSICGNKCQSFSVEGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRATRPQTVMPSSVLSSDSMHIGLLAAAAHAAATNSCFTVFYNPRASPSEFVIPLTKYVKAVFHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWSNSHWRSVKVFQLYFYNSSTKTLAPFAITLSFSLLNVVRYAKIFASSRNDYFLYWCSNDFVLKLQQFSVSFSTMKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSLFPLRLKRPWHPGVSSVHGIAYAHGSRRFVMVYFLTDNRDDASNGLMWLRGGVGEQALHSLNLQSAGSLPWLQQRLDSSMFGNDHNQQYQAMLAAGMPNLGGVDMLRQQIMHLQQPFQYAQQAGLHNSLLQLQQQQLVQQSMPQNILQAPTQVMAENLPQHILQQTLQNQPEDLPNQQQHTYHDTVQVQSNQFHQGGHSNVPSPTFPRSNLMDSNSNYPESISSRRNIIASSCAEGTGNLSNIYRSGQSILTEQLPQQSPVSKNAHSPVDAHPNSMSFPFSGRDSILELGNCNSDSPSPTLFGVNIDSSGLLLPSNVPTYASPSIAPDSTSMPLGDSGFQNSLYNCVQGSSELLHNSGQVDPSNPTQTFVKVYKTGSIGRSLDISRFSSYQELREELAQMFGIEGQLEDPRRSGWQLVFVDRENDALLLGDDPWEAFVNNVWYIKILSPQDVQELREQVIESFNPIDGQRLTSGGNEAENVSGLPSVDRDQDEASLCTSMAELSPISVSNLSNRIHFSSSSPPINSSQLFSITAKRCSNCRSISRRLGLGLIALMASSSVASTPVRIANALDLKLIAPEQSFEEAESGIRGHAEAVLQVRGLIESESWKEAQKQLRTSSPLLKQDLYTIIEYKPPAERPPLRKLYSLLFNNVTRMDYAARDKDAERVRQCYDNIVMAISDILSRI 1151
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 17596031 17611929 - CmoCh04G023590.1 Cmo04g02359 381334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g02359 1151 Gene3D - 138 262 IPR015300 -
Cmo04g02359 1151 Pfam AUX/IAA family 830 918 IPR033389 -
Cmo04g02359 1151 SUPERFAMILY Oxygen-evolving enhancer protein 3, 1044 1151 IPR023222 -
Cmo04g02359 1151 PANTHER AUXIN RESPONSE FACTOR 8 13 201 - -
Cmo04g02359 1151 Gene3D - 829 922 - -
Cmo04g02359 1151 SUPERFAMILY DNA-binding pseudobarrel domain 124 289 IPR015300 -
Cmo04g02359 1151 Pfam Oxygen evolving enhancer protein 3 (PsbQ) 1045 1150 IPR008797 GO:0005509|GO:0009523|GO:0009654|GO:0015979|GO:0019898
Cmo04g02359 1151 ProSiteProfiles B3 DNA-binding domain profile. 140 262 IPR003340 GO:0003677
Cmo04g02359 1151 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 432 932 IPR044835 GO:0003677|GO:0006355|GO:0009725
Cmo04g02359 1151 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 13 201 IPR044835 GO:0003677|GO:0006355|GO:0009725
Cmo04g02359 1151 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 217 370 IPR044835 GO:0003677|GO:0006355|GO:0009725
Cmo04g02359 1151 Pfam Auxin response factor 286 369 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Cmo04g02359 1151 Gene3D - 426 462 - -
Cmo04g02359 1151 Gene3D - 324 387 - -
Cmo04g02359 1151 SUPERFAMILY CAD & PB1 domains 825 907 - -
Cmo04g02359 1151 ProSiteProfiles PB1 domain profile. 833 918 IPR000270 GO:0005515
Cmo04g02359 1151 SMART B3_2 140 262 IPR003340 GO:0003677
Cmo04g02359 1151 PANTHER AUXIN RESPONSE FACTOR 8 432 932 - -
Cmo04g02359 1151 Gene3D - 1022 1151 IPR023222 -
Cmo04g02359 1151 PANTHER AUXIN RESPONSE FACTOR 8 217 370 - -
Cmo04g02359 1151 CDD B3_DNA 139 260 IPR003340 GO:0003677
Cmo04g02359 1151 Pfam B3 DNA binding domain 140 261 IPR003340 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g02359 Cmo-Chr4:17596031 Cmo13g00540 Cmo-Chr13:6272616 0 dispersed
Cmo18g00310 Cmo-Chr18:1984712 Cmo04g02359 Cmo-Chr4:17596031 2.11E-12 dispersed
Cmo15g00807 Cmo-Chr15:3977365 Cmo04g02359 Cmo-Chr4:17596031 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9703 PF02362 B3 2.70E-15 CL0405 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g02359 - - csv:101208098 903.279