Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g02376 ATGTCGCCATCTCTTCCACTTCACTTCCTCTTCACAGTAGCTGTAGCTCTCACATCTCCAGTAGCCTCCCATTTCTCTTCTTCCACCTCCTCGCCGTTGCCGGAGTCAGCTCCGTCTCTCTCCGACTGGAGATCTGCTCGGGCCACCTACTACGCCGCCTCCGATCCTCGTGATGCGGTCGGCGGAGCATGTGGATATGGCGATTTGGTGAAGGCAGGTTATGGCATGGCGACGGTGGGGCTCAGTGAGGCGCTGTTCGAACGTGGCCAGATCTGCGGTGCCTGCTTTCAGCTCCGGTGCGTGGAGGACCTCCGGTGGTGTATTCCTGGCACTTCTATTATTGTCACTGTTACTAATTTCTGTGCACCTAATTATGGCTTCACGGCTGACGGTGGAGGCCGTTGTAATCCTCCTAATAAGCATTTTGTGCTCCCTATTGAAGCGTTTGAGAAGATCGCTATCTGGAAGGCGGGAAACATGCCTGTTCAGTATCGGAGGATCAAATGTCGAAAGGAGGGGGGCGTTCGATATACGATTTCTGGGTACGGCATCTACCTCTCAGTGTTGATAAGCAACGTTGCAGGCGCTGGAGATGTCAGCGCTGTAAAGATCAAGGGCTCAAGAACCGGTTGGCTTTCGATGGGTCGAAATTGGGGTCAAAACTGGCACATTAACGCCGATTTGAACAATCAGGCCCTGTCCTTTGAAGTCACTAGCAGTGACGGAGTAACAATTACGTCCTACAATGTTGCTCCAAAGAATTGGAACTTCGGACAGACTTTTGAAGGCAAACAATTTGAATCTTGA 807 51.67 MSPSLPLHFLFTVAVALTSPVASHFSSSTSSPLPESAPSLSDWRSARATYYAASDPRDAVGGACGYGDLVKAGYGMATVGLSEALFERGQICGACFQLRCVEDLRWCIPGTSIIVTVTNFCAPNYGFTADGGGRCNPPNKHFVLPIEAFEKIAIWKAGNMPVQYRRIKCRKEGGVRYTISGYGIYLSVLISNVAGAGDVSAVKIKGSRTGWLSMGRNWGQNWHINADLNNQALSFEVTSSDGVTITSYNVAPKNWNFGQTFEGKQFES 268
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 17717144 17720029 - CmoCh04G023760.1 Cmo04g02376 381351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g02376 268 Gene3D - 175 266 IPR036749 -
Cmo04g02376 268 Pfam Lytic transglycolase 79 164 IPR009009 -
Cmo04g02376 268 PRINTS Expansin signature 73 87 IPR002963 GO:0009664
Cmo04g02376 268 PRINTS Expansin signature 100 111 IPR002963 GO:0009664
Cmo04g02376 268 PRINTS Expansin signature 113 123 IPR002963 GO:0009664
Cmo04g02376 268 PRINTS Expansin signature 132 149 IPR002963 GO:0009664
Cmo04g02376 268 PRINTS Expansin signature 149 162 IPR002963 GO:0009664
Cmo04g02376 268 PRINTS Expansin signature 173 185 IPR002963 GO:0009664
Cmo04g02376 268 PRINTS Expansin signature 185 206 IPR002963 GO:0009664
Cmo04g02376 268 PRINTS Expansin signature 220 241 IPR002963 GO:0009664
Cmo04g02376 268 PRINTS Expansin signature 249 265 IPR002963 GO:0009664
Cmo04g02376 268 Pfam Expansin C-terminal domain 175 252 IPR007117 -
Cmo04g02376 268 Gene3D - 28 170 IPR036908 -
Cmo04g02376 268 PRINTS Expansin/Lol pI family signature 42 57 IPR007118 GO:0005576
Cmo04g02376 268 PRINTS Expansin/Lol pI family signature 60 78 IPR007118 GO:0005576
Cmo04g02376 268 PRINTS Expansin/Lol pI family signature 82 100 IPR007118 GO:0005576
Cmo04g02376 268 PRINTS Expansin/Lol pI family signature 157 173 IPR007118 GO:0005576
Cmo04g02376 268 PRINTS Expansin/Lol pI family signature 211 225 IPR007118 GO:0005576
Cmo04g02376 268 PRINTS Expansin/Lol pI family signature 249 263 IPR007118 GO:0005576
Cmo04g02376 268 SMART dpbb_1 78 164 IPR007112 -
Cmo04g02376 268 PANTHER EXPANSIN-A15 24 267 IPR002963 GO:0009664
Cmo04g02376 268 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 61 174 IPR007112 -
Cmo04g02376 268 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 184 263 IPR007117 -
Cmo04g02376 268 PANTHER EXPANSIN-A13 24 267 - -
Cmo04g02376 268 SUPERFAMILY PHL pollen allergen 171 263 IPR036749 -
Cmo04g02376 268 SUPERFAMILY Barwin-like endoglucanases 42 192 IPR036908 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g02376 Cmo-Chr4:17717144 Cmo01g00634 Cmo-Chr1:3246744 2.96E-94 dispersed
Cmo15g00795 Cmo-Chr15:3908668 Cmo04g02376 Cmo-Chr4:17717144 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g02376 - - csv:101206236 511.531