Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g02380 ATGGTTCTTTCCAAGACTGCTTCTCAGTCGGATGTCTCCGTCCATTCCACGTTCGCTTCGCGATATGTGCGAACCTCTCTCCCGAGATTCAAAATGTCGGAAAATTCAATCCCTAAGGAAGCTGCGTTCCAGATCATCAATGATGAACTCATGCTCGATGGAAACCCTAGGCTGAATCTGGCCTCCTTCGTTACCACTTGGATGGAGCCTGAGTGCGATAAACTCATCATGGCCGCCATTAACAAGAATTACGTCGATATGGATGAATATCCTGTCACTACAGAGCTCCAGAATCGATGTGTGAACATGATAGCTCACTTGTTCAATGCCCCATTGGGGGAGAATGAGACGGCGGTGGGAGTTGGAACAGTGGGATCGTCGGAGGCCATAATGTTGGCTGGCTTGGCTTTCAAGAGAAAGTGGCAGAACAGAAGGAAGGCTGAAGGCAAGCCCTATGACAACCCCAACATTGTCACCGGAGCTAATGTCCAGGTATGCTGGGAGAAATTCGCAAGGTACTTCGAGGTAGAACTGAAGGAGGTGAAATTGAGGGAAGGTTACTACGTGATGGACCCAGAGAAAGCTGTGGATTTGGTTGATGAGAACACCATCTGTGTAGCAGCCATCTTGGGCTCCACTCTCAATGGAGAATTCGAAGATGTGAAGGTCTTAAACGATCTCTTAATCGAGAAGAACAAGGAAACCGGATGGGAGACTCCTATTCATGTTGATGCTGCGAGTGGAGGGTTCATTGCCCCATTCATATACCCTGATCTGGAATGGGACTTTAGGCTGCCCCTTGTAAAGAGTATTAATGTGAGTGGCCATAAGTATGGGCTTGTTTATGCTGGAATTGGTTGGGTTATCTGGAGGAACAAGGAAGACTTGCCTGAAGAACTCATCTTCCATATCAACTATCTTGGCGCCGACCAACCCACTTTCACTCTCAATTTCTCCAAAGGTTCTAGCCAAGTCATTGCTCAGTATTACCAATTGATCCGCTTGGGTTATGAGGGATACCAGAACGTGATGGAGAACTGCAAAGAAAACATGATTGTTCTCAAGGACGGACTGGAAAAAACAGGGCGGTTCAACATTGTGTCCAAGGACGAAGGAGTTCCACTAGTGGCATTCTCCTTGAAAGACAGCAGTCGTCACACAGAGTTTGAAGTCTCAGAAATGCTTAGGAGGTTCGGGTGGATCGTGCCAGCTTACACGATGCCTCCGGACGCGCAACACATTACAGTTCTAAGAGTGGTGATCCGAGAAGATTTCTCACGCACACTTGCTGAGCGTCTAGTGAAAGACATTGAAAAGGTGATGCACGAGCTGGACATCCTCCCGTCAAGGGCTGATATCAGAGAAGAGACAAACCACGTCGTGGTGGCGAAGAAGAGTGCACTGGAGACACAGAGGGAGATCACCACTGCTTGGAGGAAGTTTGTGATGGATAAGAAGAAGACTAATGGAGTCTGTTAG 1479 47.87 MVLSKTASQSDVSVHSTFASRYVRTSLPRFKMSENSIPKEAAFQIINDELMLDGNPRLNLASFVTTWMEPECDKLIMAAINKNYVDMDEYPVTTELQNRCVNMIAHLFNAPLGENETAVGVGTVGSSEAIMLAGLAFKRKWQNRRKAEGKPYDNPNIVTGANVQVCWEKFARYFEVELKEVKLREGYYVMDPEKAVDLVDENTICVAAILGSTLNGEFEDVKVLNDLLIEKNKETGWETPIHVDAASGGFIAPFIYPDLEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGYEGYQNVMENCKENMIVLKDGLEKTGRFNIVSKDEGVPLVAFSLKDSSRHTEFEVSEMLRRFGWIVPAYTMPPDAQHITVLRVVIREDFSRTLAERLVKDIEKVMHELDILPSRADIREETNHVVVAKKSALETQREITTAWRKFVMDKKKTNGVC 492
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 17741623 17745912 + CmoCh04G023800.1 Cmo04g02380 381355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g02380 492 PANTHER GLUTAMATE DECARBOXYLASE 1 492 - -
Cmo04g02380 492 Gene3D - 1 65 - -
Cmo04g02380 492 Pfam Pyridoxal-dependent decarboxylase conserved domain 37 381 IPR002129 GO:0016830|GO:0019752|GO:0030170
Cmo04g02380 492 SUPERFAMILY PLP-dependent transferases 15 444 IPR015424 -
Cmo04g02380 492 PANTHER GLUTAMATE DECARBOXYLASE 1 492 IPR010107 GO:0004351|GO:0006536|GO:0030170
Cmo04g02380 492 TIGRFAM Glu-decarb-GAD: glutamate decarboxylase 16 444 IPR010107 GO:0004351|GO:0006536|GO:0030170
Cmo04g02380 492 Gene3D - 66 360 IPR015421 GO:0003824
Cmo04g02380 492 Gene3D - 361 448 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g02380 Cmo-Chr4:17741623 Cmo15g00908 Cmo-Chr15:4596553 0 dispersed
Cmo01g00788 Cmo-Chr1:4138177 Cmo04g02380 Cmo-Chr4:17741623 0 transposed
Cmo15g00790 Cmo-Chr15:3875072 Cmo04g02380 Cmo-Chr4:17741623 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g02380 K01580 - csv:101216119 944.495