Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g02397 ATGAAGATGAAGATGAAGATGAAGATGAAGAGGGAGCTTGAGGATGATAGATCTACTGGTGGTGGTGTTTACGGTGGCGGAAGGCAGGGGGTTGGGAAAGGGGAGTGTTCTTCAGTGTCGGGGGGGAAAGTGAAGATGTGGGAGGAGGAGGAGCAAGAGGTCGGCGGCGGAGGAATGGATGAGTTGCTTGCTGTTTTGGGCTATAAGGTTAGAGCGTCGGACATGGCGGATGTGGCGCAGAAGATGGAGCAACTGGAGATGGTGATGGGATCTGTTAAGGAAGATGGGATTTCTCATCTGGCTTCTGATACTGTTCATTATAATCCTTCTGATCTCTCTGCCTGGATTCAAAATATGCTCTCTGAATTCAATAATACCCCCAACCATTTCAACTCTTCTTCTACTTCTACTACTCCTCCTCCTCAATCTTCTCAATATTCCAATCCTCACTCACGGATTCAATCCAGGCCTTCGCGGTTGTACGACGACGATTCTGAGTACGATCTCAGCGCCATTCCTGGCGTAGCGGTTTTTCCTTCCAAAGATTCCTCAACAGAAATCGAAACTAATTCTCGCAAGCGAGTGAAAATTGAAGGAGAGAGTTCGGTGAATTTGTTGCCGCCATCGCCACCGTTTGTTGCGGCTGCGGCAGCGGCCGGGATTGTCTCTGAACCTTCTCGGCCGGTGGTGGTTGTGGAGGAGGGTTCGCAAGACGCAGGGATTCAACTCGTTCACACTCTAATGGCCTGCGCCGAGGCCGTGCAGCAAGAAAACATGAAGATCGCTGAGGCATTGGTGAAGCACATCGGATTACTAGCGGTATCGCAAGCCGGAGCGATGAGGAAAGTCGCGACGTATTTTGCCGAAGCCCTAGCTCGTCGGATTTACAGAATCTACTCTCCTCAAGACGGATTTTACTCTTCATACTCCGATATCCTCCAGATGCACTTTTACGAGACCTGTCCGTATCTGAAATTCGCGCATTTCACTGCGAATCAAGCGATTCTCGAAGCATTCGCGACGGCATCGAGAGTTCATGTCATCGATTTCAGTCTCAATCAAGGTATGCAATGGCCGGCGCTGATGCAAGCGCTCGCATTACGGCCAGGAGGTCCGCCGACGTTTCGATTGACTGGAATCGGCCCGCCGAAGCAAGGTAATACGACCGATTCGTTGCAGCAAGTCGGTTGGAAGTTAGCGCAGATGGCGGGGGCCATTGGTGTGGAGTTTGAGTTCAATCAAATCGTGTGTAGTAACCTAGCTAATCTCAATCCGGCGGCACTGGAGATTCGGCCGGCGGCGGTGGAGGCAGTGGCGGTGAATTCGGTGTTCGATCTCCATCGGTTACTGGCTCGGCCTGGAGCGATCGAGAAGGTTTTGGGATCGATAAAAGCAACGAAGCCGAAGATCGTGACGATTGTAGAACAAGAAGCAAACCACAACGGGAGGGTTTTCATGGACCGGTTCACCGAGGCGTTACATTATTACTCAAACATGTTTGACTCGCTCGAGGTTTCCTCGACCGGGTTTGAACCGGCTAGTGAGGACGTATTGTTGTCTGAAGTTTATTTAGGAAGGCAGATTTGTAATGTGGTGGCTTGTGAAGGACCAGACCGAGTCGAACGGCACGAGTCGTTAACTCATTGGCGAACTCGGATGGAATCAGCTGGGTTCAACCCGGTTCATCTCGGTTCGAACGCGTTTAAGCAAGCTAGCATGCTTTTGGCCCTCTTTGCTGGAGGAGAGGGGTACAGAGTGGAAGAGAATAATGGGTGTTTGATGCTTGGCTGGCACACTCGACCCTTGATCGCCACGTCAGCTTGGCAGCTCGACGCCGATGAGTCGACCCAGTGA 1854 51.46 MKMKMKMKMKRELEDDRSTGGGVYGGGRQGVGKGECSSVSGGKVKMWEEEEQEVGGGGMDELLAVLGYKVRASDMADVAQKMEQLEMVMGSVKEDGISHLASDTVHYNPSDLSAWIQNMLSEFNNTPNHFNSSSTSTTPPPQSSQYSNPHSRIQSRPSRLYDDDSEYDLSAIPGVAVFPSKDSSTEIETNSRKRVKIEGESSVNLLPPSPPFVAAAAAAGIVSEPSRPVVVVEEGSQDAGIQLVHTLMACAEAVQQENMKIAEALVKHIGLLAVSQAGAMRKVATYFAEALARRIYRIYSPQDGFYSSYSDILQMHFYETCPYLKFAHFTANQAILEAFATASRVHVIDFSLNQGMQWPALMQALALRPGGPPTFRLTGIGPPKQGNTTDSLQQVGWKLAQMAGAIGVEFEFNQIVCSNLANLNPAALEIRPAAVEAVAVNSVFDLHRLLARPGAIEKVLGSIKATKPKIVTIVEQEANHNGRVFMDRFTEALHYYSNMFDSLEVSSTGFEPASEDVLLSEVYLGRQICNVVACEGPDRVERHESLTHWRTRMESAGFNPVHLGSNAFKQASMLLALFAGGEGYRVEENNGCLMLGWHTRPLIATSAWQLDADESTQ 617
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 17862439 17864292 + CmoCh04G023970.1 Cmo04g02397 381372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g02397 617 MobiDBLite consensus disorder prediction 126 164 - -
Cmo04g02397 617 Gene3D - 58 123 IPR038088 -
Cmo04g02397 617 PANTHER DELLA PROTEIN GAI1-RELATED 39 610 IPR030006 GO:0003712|GO:0005634
Cmo04g02397 617 ProSiteProfiles GRAS family profile. 234 609 IPR005202 -
Cmo04g02397 617 Pfam GRAS domain family 243 609 IPR005202 -
Cmo04g02397 617 MobiDBLite consensus disorder prediction 1 44 - -
Cmo04g02397 617 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 39 610 IPR005202 -
Cmo04g02397 617 SMART DELLA_2 60 133 - -
Cmo04g02397 617 MobiDBLite consensus disorder prediction 126 155 - -
Cmo04g02397 617 Pfam Transcriptional regulator DELLA protein N terminal 60 127 IPR021914 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g02397 Cmo-Chr4:17862439 Cmo15g01000 Cmo-Chr15:5387954 0 dispersed
Cmo07g01227 Cmo-Chr7:6689035 Cmo04g02397 Cmo-Chr4:17862439 1.08E-68 dispersed
Cmo04g03104 Cmo-Chr4:21588625 Cmo04g02397 Cmo-Chr4:17862439 1.66E-103 transposed
Cmo15g00767 Cmo-Chr15:3765077 Cmo04g02397 Cmo-Chr4:17862439 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9707 PF03514 GRAS 3.00E-135 CL0063 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g02397 K14494 - csv:101213911 900.582