Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g02411 ATGACCGGAAGCGGCGGAAGAGAGGAGAATGGAATCCGCCGGGCGGATTCCAATGAGGAGGAGTATCAGGTGGAGAGCGTTCGTGATCGGATTTCATCGTCGCGAGGGAGTCGATTTAATCTGATTCAGAAACAGTTGAGACTTGAGCCGACTCGCAGACGATTTAGCCGCGAAAATCTCATCAATGGCATTAAATGCCTCGTTATTCTCCCTGACAGCAGATGGTATAGGGCGTGGACGAAGTTCATACTGATATGGGCAATCTATTCCTCCTTCTTCACACCCATGGAATTTGGATTCTTCAGGGGATTACCAGAGAATCTATTTATACTCGACATTGTTGGGCAGCTTGCTTTCCTCCTTGACATTGTTTTCCAGTTCTTCGTTGCCTACAGAGACAGCCAGACATACCGAATGGTCTATAAGCGCACTCCAATAGCGCTCAAGTACTTGAAATCCACTTTTGTCACTGATTTGCTTAGCTGTATGCCCTGGGATATCATTTATAAGGCTTGTGGGAAGAGAGAGGAGGTGAGATATCTCCTATGGATTAGGCTATTCCGAGTGCGAAAAGTCACAGATTTTTTTCAGACGTTGGAGAAGGATATACGTATTAATTATATGTTCACTAGAATTTTCAAGCTCCTTGTTGTTGAACTTTACTGCACACATACTGCGGCCTGCATCTTTTACTATTTGGCAACTACTCTTCCTGCTTCTCAAGAAGGGTACACATGGATTGGAAGCTTGAAATTGGGAGACTATAGTTACTCACATTTCAGAGATATTGATTTATGGAAACGCTACACCACCTCTTTATATTTTGCTATTGTCACCATGGCCACTGTTGGTTACGGAGATATACATGCAGTCAACTTGAGGGAAATGATATTCATAATGATTTATGTGTCATTTGACATGGTTCTCGGTGCTTACTTGATTGGTAACATGACTGCATTGATTGTAAAAGGATCCAAGACGGTGAAATTCAGAGATAAAATGACAGATGTAATGAAATACATGAACCGGAATAGACTTAGCAGGGAGATCCGTGATCAGATTAAAGGTCATTTACGTTTACAGTATGAAAGTAGTTACACTGAGGCTACTGTTCTACAGGATATCCCAATATCAATCCGTGCTAAGATTTCCCAAACGTTATACTTGCCTTATGTTCAGAATGTCTCTCTCTTTAGAGGGTGTTCTCCAGAATTCATCAATCAAATAGTTATTAAACTCCATGAAGAGTTTTTTCTCCCTGGAGAGGTGATAATGGAGCAAGGAAATGTGGTAGATCAACTTTATTTTGTCTGTCATGGTGAGCTGGAGGAATTGGGCATAGGACAAGATGGTTCAGAAGAGACCATATCTTTACTGCAACCCAACAGCTCTTTTGGAGAGATTTCAATTCTTTGCAATATTCCTCAACCTTATACAGTTCGAGTGTGTGAATTGTGTAGGCTCTTGCGCCTTGATAAGCAGTCCTTTACAAATATCCTCGACATATACTTTTACGACGGGAGGAAAATCTTGAACAACCTTCTAGAGGGAAAGGAATCAAACCTTCGAGTTAAGCAGTTGGAATCTGATATCTCATTTCATATTGGAAAACAAGAAGCTGAACTTGCTCTCAAGGTGAACAGTGCAGCATATCATGGAGATCTATACCAATTAAAAGGTCTTGTTCGAGCTGGAGCTGATCCAAACAAGACAGATTATGATGGAAGATCGCCATTGCATCTTGCAGCATCCAGAGGATTCGAGGATATTGTTGGTTTCCTAATACAGGAAGGAGTAAACATTGATCTTAAAGATAACTTTGGCAATACTCCATTAATGGAAGCCATCAAGAACGGAAATGATCAAGTTGCTGTTTTGCTTTCTAAACAAGGAGCTTCATTGAAGGTTGAAAATGCTGGTAGCTTCCTCTGTACAGCAGTTTCAAGGGGCGATTCAGATCTTCTCAAGAGATTATTGTGCTATGGCATTGACCCCAACTCCAAAGACTACGATTTTCGAACACCATTACATGTAGCTGCTTCAGAAGGGCTGCATTTGATGGCAAAGTTGCTTTTAGAATCAGGGGCTAGTGTTTTCTCAAAGGACAGATGGGGAAACACCCCGCTTGATGAAGGCCGGATTTGTGGAAACAAGAACTTGCTCAAGCTCTTGGAAGAGGCAGAAGCTACTCAGTTGTCAGAAACCCCTTTTTCCTCTCGAGAATTCCCAGCAAAAAAACACACAAAGAAATGTACAGTGTTCCCCTTCCACCCATGGAATCGTGAAGAAAACAAAAGACCTGGAATAGTGCTATGGGTTCCACTCTCTATGGAAGAGCTGATCGAAGTAGCATCCGATCAGCTACAAATTTCAGACAAATGTTGTATATTATCAGAAGATGGAGGTAAAATTCATGATGTTCATATGATTGATGAATGCCAAAAGCTCTATCTTGTTCCTGAAACTCATTAG 2472 41.46 MTGSGGREENGIRRADSNEEEYQVESVRDRISSSRGSRFNLIQKQLRLEPTRRRFSRENLINGIKCLVILPDSRWYRAWTKFILIWAIYSSFFTPMEFGFFRGLPENLFILDIVGQLAFLLDIVFQFFVAYRDSQTYRMVYKRTPIALKYLKSTFVTDLLSCMPWDIIYKACGKREEVRYLLWIRLFRVRKVTDFFQTLEKDIRINYMFTRIFKLLVVELYCTHTAACIFYYLATTLPASQEGYTWIGSLKLGDYSYSHFRDIDLWKRYTTSLYFAIVTMATVGYGDIHAVNLREMIFIMIYVSFDMVLGAYLIGNMTALIVKGSKTVKFRDKMTDVMKYMNRNRLSREIRDQIKGHLRLQYESSYTEATVLQDIPISIRAKISQTLYLPYVQNVSLFRGCSPEFINQIVIKLHEEFFLPGEVIMEQGNVVDQLYFVCHGELEELGIGQDGSEETISLLQPNSSFGEISILCNIPQPYTVRVCELCRLLRLDKQSFTNILDIYFYDGRKILNNLLEGKESNLRVKQLESDISFHIGKQEAELALKVNSAAYHGDLYQLKGLVRAGADPNKTDYDGRSPLHLAASRGFEDIVGFLIQEGVNIDLKDNFGNTPLMEAIKNGNDQVAVLLSKQGASLKVENAGSFLCTAVSRGDSDLLKRLLCYGIDPNSKDYDFRTPLHVAASEGLHLMAKLLLESGASVFSKDRWGNTPLDEGRICGNKNLLKLLEEAEATQLSETPFSSREFPAKKHTKKCTVFPFHPWNREENKRPGIVLWVPLSMEELIEVASDQLQISDKCCILSEDGGKIHDVHMIDECQKLYLVPETH 823
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 17941080 17948095 + CmoCh04G024110.1 Cmo04g02411 381386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g02411 823 PRINTS Ankyrin repeat signature 575 590 IPR002110 GO:0005515
Cmo04g02411 823 PRINTS Ankyrin repeat signature 687 701 IPR002110 GO:0005515
Cmo04g02411 823 ProSiteProfiles cAMP/cGMP binding motif profile. 397 517 IPR000595 -
Cmo04g02411 823 ProSiteProfiles Ankyrin repeat region circular profile. 671 703 - -
Cmo04g02411 823 ProSiteProfiles KHA domain profile. 750 823 IPR021789 -
Cmo04g02411 823 Gene3D - 78 323 - -
Cmo04g02411 823 SMART ANK_2a 574 603 IPR002110 GO:0005515
Cmo04g02411 823 SMART ANK_2a 607 636 IPR002110 GO:0005515
Cmo04g02411 823 SMART ANK_2a 704 733 IPR002110 GO:0005515
Cmo04g02411 823 SMART ANK_2a 671 700 IPR002110 GO:0005515
Cmo04g02411 823 SMART ANK_2a 638 667 IPR002110 GO:0005515
Cmo04g02411 823 Gene3D Jelly Rolls 381 520 IPR014710 -
Cmo04g02411 823 Pfam KHA, dimerisation domain of potassium ion channel 749 818 IPR021789 -
Cmo04g02411 823 ProSiteProfiles Ankyrin repeat region circular profile. 574 606 - -
Cmo04g02411 823 Gene3D Helix hairpin bin 324 380 - -
Cmo04g02411 823 SMART cnmp_10 397 515 IPR000595 -
Cmo04g02411 823 CDD CAP_ED 397 511 IPR000595 -
Cmo04g02411 823 ProSiteProfiles Ankyrin repeat region circular profile. 607 638 - -
Cmo04g02411 823 Pfam Ankyrin repeats (3 copies) 549 636 IPR002110 GO:0005515
Cmo04g02411 823 Pfam Ankyrin repeats (3 copies) 644 724 IPR002110 GO:0005515
Cmo04g02411 823 ProSiteProfiles Ankyrin repeat profile. 574 606 IPR002110 GO:0005515
Cmo04g02411 823 MobiDBLite consensus disorder prediction 9 25 - -
Cmo04g02411 823 SUPERFAMILY Voltage-gated potassium channels 71 322 - -
Cmo04g02411 823 Gene3D - 640 734 IPR036770 -
Cmo04g02411 823 MobiDBLite consensus disorder prediction 1 25 - -
Cmo04g02411 823 Pfam Cyclic nucleotide-binding domain 417 501 IPR000595 -
Cmo04g02411 823 PANTHER POTASSIUM CHANNEL AKT1 8 822 IPR045319 GO:0005249|GO:0006813
Cmo04g02411 823 Pfam Ion transport protein 77 322 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Cmo04g02411 823 PANTHER POTASSIUM CHANNEL SKOR-LIKE 8 822 - -
Cmo04g02411 823 SUPERFAMILY cAMP-binding domain-like 325 515 IPR018490 -
Cmo04g02411 823 PRINTS EAG/ELK/ERG potassium channel family signature 112 122 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cmo04g02411 823 PRINTS EAG/ELK/ERG potassium channel family signature 221 231 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cmo04g02411 823 PRINTS EAG/ELK/ERG potassium channel family signature 269 286 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cmo04g02411 823 PRINTS EAG/ELK/ERG potassium channel family signature 313 322 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cmo04g02411 823 SUPERFAMILY Ankyrin repeat 546 726 IPR036770 -
Cmo04g02411 823 Gene3D - 531 639 IPR036770 -
Cmo04g02411 823 ProSiteProfiles Ankyrin repeat profile. 607 639 IPR002110 GO:0005515
Cmo04g02411 823 ProSiteProfiles Ankyrin repeat profile. 671 703 IPR002110 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g02411 Cmo-Chr4:17941080 Cmo11g00553 Cmo-Chr11:2690138 2.69E-126 dispersed
Cmo06g00951 Cmo-Chr6:7368874 Cmo04g02411 Cmo-Chr4:17941080 0 transposed
Cmo15g00753 Cmo-Chr15:3699749 Cmo04g02411 Cmo-Chr4:17941080 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g02411 K21867 - csv:101210912 1501.11