Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g02413 ATGTCGAGGAATGCTAAATGGAAGCTTGAGAAGACAAGAGTAAAGGTGGTCTTCAGGCTTCAATTTCATGCCACGCATATTCCGCAATTTGGATGGGACAAACTATTTATATCTTTTATTCCTGCTGATTCTGGAAAGGCAACAGCAAAGACAACTAAAGCAAATGTGAAAAATGGAGCCTGCAAATGGGCTGATCCTATCTATGAAACAGCTAGGCTTCTTCAAGACACTAGAACAAAGAAATATGATGATAAGCTCTATAAACTTGTGGTGACCATGGGCTCGTCTCGTTCGAGCATTCTTGGGGAAGCTGACATCAATCTTGCTGATTATGCTGATGCATTGAAGCCTTCAGCTGTTGCCCTGCCTCTTAATGGGTGTGAATCAGGAACTATTTTACATGTTACTGTACAGCTTCTTACTTCTAAAACTGGTTTCAGGGAGTTTGAGCAGCAAAGGGAGCTTAGGGAGAGGGGGCTCCCAACGTTCTCCGATCAAAATAGTCATGGTGAATCTCCTAGCGGAAAAGTGTCACTATCCGATGATTCAGTGAATAATCATTCAAATAAGGTCAATGCAAGAATTAGGTCCAAAGAAGTATATAGCGAACTCCCCTTACTTGAAGACGAGGTTGGGCGAAAAGAAGAGTATGCAGATTCAGCAACCGGTTTTGATGGCTCTTCCAATACTTCAGAAAGTCTATATGCTGAGAAACATGAAATTGACAGCATAAAGAGCACAGTATCTGGTGATCTAGGTGCCATTTCCACTGGCCAAAGTCCTGGGTCAGAGAAAGGAGACCAGGGTGATCATCAATATTCAGTGCAGGGATCCAATAAATGGGCTCATAACTGGGGTTCTGACTATGCTGCTGATGGTGAACTGGCTGCTGTATATAAAGAAAATCATAGACTTAGAGAAAGCTTGGAAGTCGCAAATTCCTCGATTGTTGAGTTGAAGCTAGAGGTAAGCACTCTGCAAAATCATGTCGATGATATGGACGTCGAAACACAAAAATTTGCTTGGCAGCTTGCTTCTGAGACTTCTTCAGGTAAAGAACTGACAGAAGAAGTTTCAGTATTGAAATCCGAGTGTTTAAACCTTAAAAACGAGCTCGAGAGATTAAAAAATTTGCAATCAAGTCTTTCAGAATCTAGAAAAGAAATTGTGGAGAGTGACCAGGATAACTTATCCCAAAAGTTAGAGCTAAAATGGTTAAAGGGGCTCTTAACAATGGAGGAAAAGATTAGAGATATACTAAATAAGGCTCACTTTGGATGTCAAGACAGAGATGTTCGGTTTCTTCTGGCCGACTTGGAGGCCTTGCTCTGCTTTCTACAAGATTTCAGAGAACGAACGGAACAGGAAATTTCATGTGTCAAAGCAAACCAAAATGAGATCCGAAAGTTAAACTCCCCGATACTGGCATCGGGAACTGGGTTCGATTCAGACATTTACCACACTGATAGCATGCTTCATTGTCTTATACCGGGTCTGGTGTCGTACGAGCCCAATTCTATAGATGCCTTCAGTTCAATGAAAGGGAAAATTTTTGAACTTCTAAGGGAGTTGGACGAGTCAAAAGCGAAACAGGAAAGCCTTGCACAGAAAATGGACCAAATGGAATGCTATTATGAAGCTTTTATCCATGAACTTGAGGAAAATCAGAGACAGATTATTGGAGAGCTGCAGAATCTCAGAAATGAGCATGCAACATGTATATATACTATCACGGCTTCTAAGGATGAAATAGAAGCCCTGCATCATGAAATGAATAACCATTTAATGAAGTTTGCTGAAGACAAGAAGAGCTCAGATTTCATCAATAAGGAGCTTGAAAGGAGGGTTTTTAGTGCTGAGACGGCTCTCAAAAGGGCACGCTTAAACTACTCAATTGCCGTGAATCAGCTACAGAAGGACCTCGATCTACTATCCGTCCAGGTGACATCCATGTATGAAACTAATGAGAACCTCATTAAGCATGCACTTACTGGTTCTTCACTTCCAAGTAGTCGAGAATACTGTGAAATAGTTTCGAATCCAAAAGTCGAATTGGAGGAAATTTCTACTGGAAAACTCTTGCAGTGTCAGAATCATGATGCAGGGGTGAAGAAATATCATTTTACGGGCGGTATTTTCTCTGAAGACTTGAAAAGGTCTCTCTACTTGCAGGAAGGGCTGTATCAAAAGGTTGAAGATGAAGTCTTTGAAGTGCATTTAGTAAACATACACCTGGATATATTTTCAAAGACGCTGCAAGAAACTTTGCTTGAAGCGAGTACTGGTTTTCGACTTATGAAAGAGAGAATGAATGAGATTAGTCAGCAGCTGGAACTATCAACCAAGTCCAAGGAATTATTGTTTCTTGAACTGCAAGCTTCTTTGGAAGAGATTGATTCTCTGAATAAATATAAAACTGCGATCGTTGCAAAATACAACGAAATGGAATCGAAGACTGAAATCTTAGAAGAAAATTTATTAAACGTTACTCGTGAAAATTCCTTGCAGGCCAAGAAAATGGCAGAATATGAGGCCTTGATGACAGAATATAGTACTTCTGAGAAAAAGTATCAGACTTGTCATATGGAGAAGTTAGAGCTGGAAAATTCAATGATGAAGGAAAGCTTTGAAAATGAAAAACTTCGTAACGAGATTTCTTCTTTGCACAAAGAATTCAAAGCTCATAGAGTTGAATTCGACAACCTCGTTTCAGTGAAGGAGGATCTGCATAATACTGTTGATTTTGCTCATGATAAGTTGAGTAACTTATTGGCTTCCTGTGACAAAAACTATAACAATCTCTTTACCTTAGGTGATTCTGTTCATGATGATTTGGATTCAAAGAGCTTAGCAGGCGTGGTTTCGCAGTTCGAAAATCTCCATCTTGATGCATGCAAGAAAGTTCTTCAGCTAATGAACGAGAACGAGCGTCTAATGGAAGAAAGAGATATGGCTCAAAAGTCCTTGAGCACAGCAGCATCAGAGAATCTAATCATGAAAGAGAATCTTGAACGTGTAACACAAGACACGGTCGACCGATTGGATAAGGCGAATGAGCTAGTGCAGAAGTTTCATATAGCAATGGAGACTGTTTCTGAAAACATTAATAGCAGTGAAGCTGGAGATAAATTTACCCAGCAGCATAAAGAACTTCTGTCTGTTCTCGATCATGTCGAGGATGAACTCGAACAACTGACTTCTAAAAACAATGGGCTTGAAAATGAAATGATGGCACTGAGATTGGTAGATGAAGAACTTGGAAATTGTAAGTTTACGATCGAGCTCTTAGCGAAGGAGAAAAACTCTCTAGTTGAGTCATTACATGAAAAAGTAGAGGAATCAATGAAGCTTAAGTTAGAGCTGGATCGTTCAAAAGATAATTCTGAATCAGAGAAAAGTTTGAGAAATAGTTTGGAGAAAAGAATTAAAGATCTCGATGATCATTTTGAGAAAACGAAGGCGGAAGTTGGAAGTCTCAAGCACTTGGTATTGGAGCTCGAGTCGGAGAAATCAAGACTCAACGAAGATTTAGTACGGTCCGAGGAACTTCTTAAGCGCTTCGATCAAGAAAACTCTTCCTTGGTTTGTTTGGAAAGTGAATTATGTGAAATGCATGAGTTTTCAATAGCTGCAGATGTTAGCCTAGTTTTCACAAGATCTCAGTATCAGAACCATCTTGAAAATCTTGTTCAGAAACTTGTGTTATCAGAAACGGAGTTAGAAGCTTTCGCTTCGGAAAACAAAACGCTTCTTGATGCAAACAAAAGAGGGACGATTCAGTCCGAGGAATTACGAAACCGGACTAAAATTTTGGAGGTTGCAGCTGATGCTGATAGAACTCATCATGCTCAAGAGATTGAAAAACTGGGGAAAAAGTTGAAGACTTATGAAACTGAGATTCATGATTTGTTGCTTTGTAAGGAAGAACTGGAAGTAAGTTTGTTGGTTGTCCGATCGAAATTGGACGAACAGCATGCTCATATAATCATGCTCGAAGGTATGAGCGACGAGACGGTAATCTTGCAAAATAAGTGTAATGATCTAACCCAGAGGCTTTCTGTACAAATCTTGAGAACAGAAGAATTCAAGAACTTGACTACTCACTTGAAGGATCTAAAAGACAAGGCCGACGCAGAATGTCGACAACTTCGTGAAAAGAAAGAGAACGAAGGGACATCGAATTCCATGCAAGAGTCTCTTAGAATTGCATTCATCAAAGAGCAATACGAAACGAAGTTGCAGGAATTGAAGCACCAGCTCTCTGTGTCTAAGAAACACAGTGAAGAAATGCTGTGGAAGTTACAAGACGCAATCGATGAAGTCGAAAATAGGAAAAGAACTGAAGTTTCTCACATAAAACGAAACGAAGAGCTCGGAAATAAGATCCTGGAGCTGGAAGATAACTTGAATGCAGCTGTTTCCGAAAAGCGGGAAATAACGAAGGCGTATGATTTGGTGAAGGCTGAAAAAGAATGCTGTTCTATTAGCCTTGAATGCTGCAAGGAAGAAAAACAAGAGCTTGAAGATTGTTTGAAGAAATGTAATGATGATAAACTAAAATTTTCAATGGAACTGAACCTAATGAAAGATTTATTGGAGAGTTATAAAATGTCCTCAGACCAAGAAAATGCAGCTCCTTGTGAAGAAGTGGAATGCACAAGATCGGTTTCAGCTGATGAGACCGATAATTCACAAGCTTTCATCAATGGTCGAGGGCGACCCGAGCAGGATGTTCGGATGTTGAGAAGTGTTGACGGGCTCCAAGATGGCTCTCCTGGCAATCAAGATGGCTCACTGCATGATGAGACAAAGCATTTAGCTCTGGTAAATGATAACTTCAGAGCTCAAAGCTTGAAATTTAGCATGGATCACCTAAATGAAGAGTTGGAAAGATTGAAAAACGAAAACTCGCTTGTGCCTGATGATCATACTTCGGAGGCGGATTTTCCTGGGTTAGAATGTCAACTGATGCAGTTACATAAGGTGAACGAAGAACTAGGAAGCATATTCCCTCTGTTCAAGGAGTTTTCGAGCAGTGGCAATGCTTTAGAACGGGTACTAGCTTTGGAGATCGAGCTCGCTGAAGCGTTGCGAGCTAAAAAGAAACCGAGCCTACATTTTCAGAGTTCTTTCTTGAAGCAACACGGCGATGAAGAAGCGATATTCCGAAGCTTTCGAGACATCAATGAGTTAATCAAAGACATGTTAGATCTAAAGGGAAAGTACACAACTGTCGAGACTGAGCTGAGAGAGATGCATGACCGTTACTCCCAATTAAGCCTTCAGTTTGCAGAGGTTGAAGGGGAGAGACAGAAGCTCATGATGACTGTCAAGAACGTCCGAGCGTCCAGGAAGCTTCTAAATGCCAATAATCGACCCTCGTGGTCGTCCCGAGAGGAGAATTCTCCTTCGTAG 5415 40.54 MSRNAKWKLEKTRVKVVFRLQFHATHIPQFGWDKLFISFIPADSGKATAKTTKANVKNGACKWADPIYETARLLQDTRTKKYDDKLYKLVVTMGSSRSSILGEADINLADYADALKPSAVALPLNGCESGTILHVTVQLLTSKTGFREFEQQRELRERGLPTFSDQNSHGESPSGKVSLSDDSVNNHSNKVNARIRSKEVYSELPLLEDEVGRKEEYADSATGFDGSSNTSESLYAEKHEIDSIKSTVSGDLGAISTGQSPGSEKGDQGDHQYSVQGSNKWAHNWGSDYAADGELAAVYKENHRLRESLEVANSSIVELKLEVSTLQNHVDDMDVETQKFAWQLASETSSGKELTEEVSVLKSECLNLKNELERLKNLQSSLSESRKEIVESDQDNLSQKLELKWLKGLLTMEEKIRDILNKAHFGCQDRDVRFLLADLEALLCFLQDFRERTEQEISCVKANQNEIRKLNSPILASGTGFDSDIYHTDSMLHCLIPGLVSYEPNSIDAFSSMKGKIFELLRELDESKAKQESLAQKMDQMECYYEAFIHELEENQRQIIGELQNLRNEHATCIYTITASKDEIEALHHEMNNHLMKFAEDKKSSDFINKELERRVFSAETALKRARLNYSIAVNQLQKDLDLLSVQVTSMYETNENLIKHALTGSSLPSSREYCEIVSNPKVELEEISTGKLLQCQNHDAGVKKYHFTGGIFSEDLKRSLYLQEGLYQKVEDEVFEVHLVNIHLDIFSKTLQETLLEASTGFRLMKERMNEISQQLELSTKSKELLFLELQASLEEIDSLNKYKTAIVAKYNEMESKTEILEENLLNVTRENSLQAKKMAEYEALMTEYSTSEKKYQTCHMEKLELENSMMKESFENEKLRNEISSLHKEFKAHRVEFDNLVSVKEDLHNTVDFAHDKLSNLLASCDKNYNNLFTLGDSVHDDLDSKSLAGVVSQFENLHLDACKKVLQLMNENERLMEERDMAQKSLSTAASENLIMKENLERVTQDTVDRLDKANELVQKFHIAMETVSENINSSEAGDKFTQQHKELLSVLDHVEDELEQLTSKNNGLENEMMALRLVDEELGNCKFTIELLAKEKNSLVESLHEKVEESMKLKLELDRSKDNSESEKSLRNSLEKRIKDLDDHFEKTKAEVGSLKHLVLELESEKSRLNEDLVRSEELLKRFDQENSSLVCLESELCEMHEFSIAADVSLVFTRSQYQNHLENLVQKLVLSETELEAFASENKTLLDANKRGTIQSEELRNRTKILEVAADADRTHHAQEIEKLGKKLKTYETEIHDLLLCKEELEVSLLVVRSKLDEQHAHIIMLEGMSDETVILQNKCNDLTQRLSVQILRTEEFKNLTTHLKDLKDKADAECRQLREKKENEGTSNSMQESLRIAFIKEQYETKLQELKHQLSVSKKHSEEMLWKLQDAIDEVENRKRTEVSHIKRNEELGNKILELEDNLNAAVSEKREITKAYDLVKAEKECCSISLECCKEEKQELEDCLKKCNDDKLKFSMELNLMKDLLESYKMSSDQENAAPCEEVECTRSVSADETDNSQAFINGRGRPEQDVRMLRSVDGLQDGSPGNQDGSLHDETKHLALVNDNFRAQSLKFSMDHLNEELERLKNENSLVPDDHTSEADFPGLECQLMQLHKVNEELGSIFPLFKEFSSSGNALERVLALEIELAEALRAKKKPSLHFQSSFLKQHGDEEAIFRSFRDINELIKDMLDLKGKYTTVETELREMHDRYSQLSLQFAEVEGERQKLMMTVKNVRASRKLLNANNRPSWSSREENSPS 1804
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 17951968 17959889 + CmoCh04G024130.1 Cmo04g02413 381388

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g02413 1804 Coils Coil 1406 1444 - -
Cmo04g02413 1804 Coils Coil 1455 1482 - -
Cmo04g02413 1804 Coils Coil 609 629 - -
Cmo04g02413 1804 Coils Coil 812 832 - -
Cmo04g02413 1804 ProSiteProfiles C2 NT-type domain profile. 6 141 IPR019448 -
Cmo04g02413 1804 Coils Coil 1615 1635 - -
Cmo04g02413 1804 Coils Coil 1000 1020 - -
Cmo04g02413 1804 MobiDBLite consensus disorder prediction 161 191 - -
Cmo04g02413 1804 MobiDBLite consensus disorder prediction 250 275 - -
Cmo04g02413 1804 Pfam N-terminal C2 in EEIG1 and EHBP1 proteins 11 140 IPR019448 -
Cmo04g02413 1804 PANTHER SPORULATION-SPECIFIC PROTEIN 1237 1796 - -
Cmo04g02413 1804 PANTHER SPORULATION-SPECIFIC PROTEIN 1 1238 - -
Cmo04g02413 1804 Coils Coil 351 395 - -
Cmo04g02413 1804 Coils Coil 1497 1517 - -
Cmo04g02413 1804 Coils Coil 1135 1155 - -
Cmo04g02413 1804 Coils Coil 1048 1082 - -
Cmo04g02413 1804 Coils Coil 1369 1389 - -
Cmo04g02413 1804 Coils Coil 517 537 - -
Cmo04g02413 1804 Coils Coil 549 569 - -
Cmo04g02413 1804 Coils Coil 302 322 - -
Cmo04g02413 1804 MobiDBLite consensus disorder prediction 158 191 - -
Cmo04g02413 1804 Coils Coil 1226 1246 - -
Cmo04g02413 1804 Coils Coil 862 898 - -
Cmo04g02413 1804 Coils Coil 1163 1190 - -
Cmo04g02413 1804 PANTHER MYOSIN HEAVY CHAIN-RELATED PROTEIN 1237 1796 - -
Cmo04g02413 1804 PANTHER MYOSIN HEAVY CHAIN-RELATED PROTEIN 1 1238 - -
Cmo04g02413 1804 Coils Coil 968 995 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g02413 - - - cmos:111458023 3426.34
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g02413 Cmo-Chr4:17951968 Cmo16g00637 Cmo-Chr16:3143248 9.84E-46 dispersed
Cmo15g00752 Cmo-Chr15:3685724 Cmo04g02413 Cmo-Chr4:17951968 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g355 . . . . . . . . Cmo04g02413 . . . . . . . . . . . . . . . . . . . . . . Cone4ag1360 Cone7ag1573 . . . . . . . . . . . . . . . . . . . Car04g02229 . Cpe01g02004 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005592 0 4 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 3 2 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo04g02413 Cmo_Chr04 FPKM 19.894276 21.472536 88.997314 89.343201 7.819162 6.028826 8.075326 51.660667 57.292339 60.44944