Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g02421 ATGGGTTCTTTGCCTTCTGACACTCTCGCCGTCGAAATGACCGACACCCATGTTCTCGCCGGCGCCGGCGACGGAGCAGACACCACCGAATGGCTCCTCAATTCTCCCAATCCTCCGAGTTTCTGGGAAGAACTTGCCGCCGCCGTCAGAGAAAATGTCATTCCACGAAGCTGCACAAAGACCCATTTGGCAAAGAAGAAGACGAAAACCACTTCTTCAAGCTCTGAAAAACAGAGCATTTTTAAAGCCACTCTGACCCTTCTGCAGAGCATGTTCCCAATCCTCAAATTGGGCCGAAACTACAAAGCTTCTAACTTCAAAAGCGACATAATGGCTGGTTTAACTCTTGCCAGTCTCAGCATTCCTCAGAGTATTGGGTATGCGAATTTGGCTAAGCTTGATCCTCAGTTTGGTCTCTATACAAGCGCTGTTCCTCCTTTGATCTATGCTCTAATGGGGAGCTCGAGAGAGATAGCCATTGGCCCAGTGGCTGTGGTGTCGCTGCTTCTTTCGTCTATGCTGCAAGAGATTCGAGATCCTGTTGCAGACCCAGTTGGCTATAGAAGCCTTGTTTTTACTGTCACCTTATTTGCTGGGATTTTCCAAGCAGGATTTGGACTTCTGAGATTGGGGTTTCTTGTGGATTTTCTATCTCATGCTGCCATTGTTGGGTTCATGGCTGGAGCTGCCATTCTCATTGGTCTTCAGCAATTGAAAGGCTTGCTTGCTATTAGCAACTTCACGACCAAAACCGATGTGGTCTCTGTTTTGGAATCTGTCGTGAGATCTGCTCACCAGCCTTGGTACCCTTTGAACATTGTTCTTGGCTGCTCGTTTCTGATCTTTCTCCTTGTGGCCAGGTTTATTGGTAGAAGGAAAAAGAAGCTGTTTTGGGTGTCAGCCATTGCTCCTCTCATATCTGTCATTCTCTCCACTTTGATAGTGTTTGTGTCAAGAGCTGATAGACATGGAGTTAAGATAGTTAAGGAAGTAAAAGAAGGGTTGAACCCAATCTCTGTTCATCAGCTGCAATTCAACAGCTCAAGTGTTGGCTTAGCTGCCAAATCTGGCCTCATTGCAGCCATCATAGCTCTCACAGAAGCGATGGCTGTTGGCCGATCCTTCGCCTCCATTAAAGGCTACAACATTGATGGGAACAGGGAGATGATTGCTATGGGCTTCATGAACATTATAGGCTCTCTAACCTCTTGCTATGTAGCCACTGGGTCATTCTCAAGAACGGCTGTGAATTTTAGTGCTGGGTGTGAGAGTGTATTGTCAAATATAGTGATGGCAATAACAGTGATGTTGGCATTGCAATTCTTCACAAGGCTCCTCTACTTCACTCCAATGGCCATTTTGGCTTCAATCATTCTCTCTGCTCTCCCTGGTCTTATTGACATCAATGAAGCTCTGCGCATCTGGAAGCTCGACAAGCTTGACTTTCTTGCCTGTCTTGGCGCTTTCCTCGGTGTCTTGTTTCATTCCGTGGAATTTGGCCTTCTTCTTGCGGTCGGAATTTCATTTGCGAAGATATTGTTGATATCGATGAGACCCGCTATAGAAGAGGTGGGAAGGCTTGGAAGAAGTGACATGTTTGGCAACATGAAGCAATTCCCTATGGCCATGAAAACTCAAGGAATCTCCATTGTTAGAATAAACTCTAGCTTGCTTTGTTTTGCCAATGCCAGCTTCATCAAAGACAGAATAATGAGATTGGTTGAAGAAGATGATGATATTGAAGAAACAACCAAAGATCAACCTAAGCAACTAGTTGTCGACATGTGTAATGTTATGAATATCGACACGTCGGGGATCATTGTTCTAGAGGAACTTCACAAGAGGTTGTTATTGAACGGGATACAGGTAACAATAGCAAGTCCAAAATGGGAAGTGATTCACAAACTTAAAAGAACCAATTTTGTTGAAAGAATTGAAGGAAGGGTTTTCCTATCAGTGGGTGAAGCTGTGGATTCATGCCTTCAAAGTGCTTCCAAATTGCCTTCTCCTACCAAAGTGCTTGTCACTTGA 2031 44.95 MGSLPSDTLAVEMTDTHVLAGAGDGADTTEWLLNSPNPPSFWEELAAAVRENVIPRSCTKTHLAKKKTKTTSSSSEKQSIFKATLTLLQSMFPILKLGRNYKASNFKSDIMAGLTLASLSIPQSIGYANLAKLDPQFGLYTSAVPPLIYALMGSSREIAIGPVAVVSLLLSSMLQEIRDPVADPVGYRSLVFTVTLFAGIFQAGFGLLRLGFLVDFLSHAAIVGFMAGAAILIGLQQLKGLLAISNFTTKTDVVSVLESVVRSAHQPWYPLNIVLGCSFLIFLLVARFIGRRKKKLFWVSAIAPLISVILSTLIVFVSRADRHGVKIVKEVKEGLNPISVHQLQFNSSSVGLAAKSGLIAAIIALTEAMAVGRSFASIKGYNIDGNREMIAMGFMNIIGSLTSCYVATGSFSRTAVNFSAGCESVLSNIVMAITVMLALQFFTRLLYFTPMAILASIILSALPGLIDINEALRIWKLDKLDFLACLGAFLGVLFHSVEFGLLLAVGISFAKILLISMRPAIEEVGRLGRSDMFGNMKQFPMAMKTQGISIVRINSSLLCFANASFIKDRIMRLVEEDDDIEETTKDQPKQLVVDMCNVMNIDTSGIIVLEELHKRLLLNGIQVTIASPKWEVIHKLKRTNFVERIEGRVFLSVGEAVDSCLQSASKLPSPTKVLVT 676
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 17976223 17981927 - CmoCh04G024210.1 Cmo04g02421 381396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g02421 676 Pfam Sulfate permease family 106 486 IPR011547 GO:0016021
Cmo04g02421 676 PANTHER SULFATE TRANSPORTER 2.2 26 665 IPR030315 GO:0008272|GO:0015116
Cmo04g02421 676 ProSitePatterns SLC26A transporters signature. 135 156 IPR018045 GO:0008271|GO:0008272
Cmo04g02421 676 Gene3D STAS domain 534 666 IPR036513 -
Cmo04g02421 676 ProSiteProfiles STAS domain profile. 558 660 IPR002645 -
Cmo04g02421 676 TIGRFAM sulP: sulfate permease 93 653 IPR001902 GO:0015301|GO:0016020|GO:0055085
Cmo04g02421 676 PANTHER SULFATE TRANSPORTER 26 665 IPR001902 GO:0015301|GO:0016020|GO:0055085
Cmo04g02421 676 CDD STAS_SulP_like_sulfate_transporter 539 651 - -
Cmo04g02421 676 SUPERFAMILY SpoIIaa-like 544 660 IPR036513 -
Cmo04g02421 676 Pfam STAS domain 542 656 IPR002645 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g02421 Cmo-Chr4:17976223 Cmo19g00288 Cmo-Chr19:2113518 0 dispersed
Cmo16g00739 Cmo-Chr16:3688494 Cmo04g02421 Cmo-Chr4:17976223 0 transposed
Cmo01g01470 Cmo-Chr1:11419047 Cmo04g02421 Cmo-Chr4:17976223 0 wgd
Cmo15g00746 Cmo-Chr15:3662569 Cmo04g02421 Cmo-Chr4:17976223 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g02421 K17469 - csv:101211892 1079.32