Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g02429 ATGACTAGAGACCGATGTCACCTGGGAAAGAAGATGATGGGTAGGGGTGCGGATGGAGGCTGTGGTGCTGAGGAGAGGTCTTGCCCAGTGGCAAGAGTGCCGAACAGAGTAACGTTGACCCATACTCAAACACATGAGGACAAGTTGTCTACTGTGGACATTGATTATTACGCTCAGGCTCAAAAGGCGTTGTGCGAGCGTTCGCCATTTGATGTAGCGGAGGAGACTGCAGCTCCTTATGTGCCCACTCTGCCCAGTAGGTTGGGTAGCTTTTTGAGCAGACATACGGGTGGTAAGAAGCGGCAGAGGAAATCCAATTCTGGGGCAGACAAGAAGTCTTCGAGGCAAGGTGAAAGGTCACGTGGCTCCAACATTTGGGTCGAGACAGAGGAATATTTTAGGGACTTGACGCTGTCTGATGTAGATACTTTGCGTGCATCGTCTTCTTTTAGTGGTTTAGGGTTTAGGAAATGTTTTTCAATTCCGTCTTCTGGAAATGACTCAGAAGCAAATGTAGGTGGCAGTGATAATGTTAGTGATGAGATTACGGATAGGGCTATTATTAAAGACGAGGTTGAGGATGACCGTTTGGGCTCGGATGTGGGCATGGTTGAAGCCAGTGGTTCTCCTCTTGGAGACAAGGGTTGTTCGAACTTGGATTCGTCTCCCGGCTTAGAATGGATATTGGGTTGTAGGAATAAGGTGTCCTTAACTTCGGAGCGGCCTTCGAAGAAACGGAAGCTTCTAGGTGGTGATGCAGGATTGGAAAAAGTTCTGATTGTTTCTCCTTGCGATGGAAATTCATCTTTATGCCACTTTTGCTCTAAGGGAGATACGTACAAAGGGGTAAATCCGTTAGTTACTTGCAGTTGTTGTTATGTGGTGGTTCACTATAAGTGCTATGGCATAAGAGAGAAAGTCAATGGATCCTGGTCGTGTTCTTGGTGTAAGCAGAAGGATAAAATCAATGATTCCACAAAGCCCTGTTTGCTCTGTCCCAAGCAGGGTGGTGCTCTGAAGCCTGTACATAAGAACGTCGACAGTGGATTTTCTGTTGAGTTTGCTCATTTATTTTGTAGTCAGTGGATGCCAGAGGTATTCATAGAGGACTTGACGCGGATGGAGCCTGTTATGAATTTGGGAGGTGTAAAAGAAACCCGGAAAAAGTTAGTATGTAACATATGCAAAGTCAAGTATGGAGCCTGTCTCCGGTGCAGCCATGGAACTTGCAGAGCATCCTTTCATCCAATTTGTGCAAGGGAGGCTAGGAATAGAATGGAGGTCTGGGCAAAATATGGGTGTGATAATGTGGAGCTTCGTGCTTTCTGTTCAAAGCATTCAGAAAGTCAATATTGTAGGAGCAGTGGCCGATTTCAAGACCCTTCTGAAGCTGTTAACAGTGGCTCACATGTGGTCAACCACCTTCCAATGACATTATCAGTCAACAGACCACAAAAATTAGTTGGGAGAAGGAACATTGATAACCTTATACTCTGTAAGGATGCTTCTGATTCCAACCCTGGAAAATTGGACGATGGCAAATTAGAAGATATAGGATCCTCTTATCCCAGTTTAAATGCGGATTCTGATTGTGTAGATACACATAAATGTACTGTCCAGGGGGTTGAGGATGTCATCCCACTTGATTCCCTTAAGTTTGCAACAATTATGAAAAAGTTGATCGACCAAGGAAAAGTGAATGTTAAAGATGTAGCATCAGAAATCAACATACATCCTGATTTATTATGTGCAAAACTTACTGCTGAAAACCTTGTCCCTGACCTGAAAGTCAAAATTGTCCGATGGCTAAAAAATCATGCTTATATTGGCACCTTGCAGAAAAATTTGAGAGTCAAACTCAAATCGGCTGCTTTACCCAAAGCTGTTGTTGGAGCTGCTAATTGTTCCGACTCTTCGTCGGTTCCTGATTCTGATGATTCAAATCTTGTTACTGATAAGATGGTTATACCTCAAAGAAAAGCTAAAAACACTATAAGCCTTTTGAAGAACGATGAAATCAAATCTTCGTCTGAAGAAATTGTTGGTGGCCATGGTCTTGCGGTGCAAAGTGGTATCTTGGACCAAAAAGCTTGTGAAGAACAAGCTGATTCAAATAAAGAATGCATCCAAGACACTGGAGAGAAGCATTTAAATGAGCATGAGAGTTCTCAAGATTCCCCTTCAAGGAATTTTCCAAATTATGTAGAGGGTGATCATTTGGAGGTTCCCATTTCTGGCCATTATTCTTCAATAAGTGCAGTTCATGGAAAGCCTAGGGAGTCCCCTGATTCTTATTTTCATCCATATGTCCAAGAGAAGATGGCACATATGTTGGATGGAAAGCTTCTTGATGTGTTTGAAGGAGAGATGTCTCGTTGGCAAGCTTCTTCCAATGCAAGCGTTTGCTGTGATCACCAACACCAGTATCTCGAGTGCAATGATGTGAGTTGCAAATCTGGTGGATTTAATCCGACGCAGCAAATGAATAAAAAAATAAGTGGAATCATAAAGTTGTCTCCAGAAGATGAAATTGAAGGAGAAATTATATTTTATCAGCATAGATTACTTGCAAATGCAGTTTCAAGAAAGCGGTTCACTGATCATTTAATTTGTAATGTTGTTAAGAGTCTTCCTAAGGAGATCGATGAAGCAAGAAGTACGAGATGGGATGCCGTTCTTATTAATCAGTATTTTAGTGAGCTCAGAGAAGCCAAGAAACAGGGTAAGAAAGAGAGAAGACACAAGGAAGCGCAGGCTGTACTAGCTGCTGCAACTGCTGCTGCGGCCGCCTCTTCTAGGATGTCATCTTTCAGAAAAGATGTATATGAAGAATCTACTCATAGAGAGTTGATGCCTCGTGCAAAAGAAACTCTTACAAAAGTTGCTCTCCCGAAGGCTTCATTAGAGTCTGATTTCTGTAAAGAACATGTGAGATCCTGTGACATCTGCAGGCGGCAAGAGACAATATTAAAGCCAATTTTAGTCTGCTCCAGCTGCAAGGTTGCTGTACATCTGGATTGCTATCGTACTGTTAAAGCGTCCTCAGGTCCATGGTGCTGTGAATTATGTGAAGAATTGTCACTATCAAGAGGGCCTGGAGTGCCAGCTGTCAATCTTGGGGAGAAGTCATATTTTGTTGCAGAATGTGGTCTATGTGGTGGCACCACAGGTGCATTCAGGAAATCAGCAAATGGCCAGTGGGTCCATGCCTTCTGTGCAGAGTGGGTCTTTGAATCAACTTTCAAAAGAGGACAAGCAAATCCTGTGGGAGGAATGGAGACAGTTTCAAAGGGGATGGACTCTTGCTATATTTGTCACCGCAAGTATGGTGTCTGTTTGAAGTGCAATTATGGTCATTGTCAGTCCGCTTTTCATCCCTCATGCGCTAGAAATGCTGGATGTTACATGACTGTAAAGACTTCTGGTGGTAAATTGCAGCACAGGGCATATTGTGAAAAACATAGCACAGAGCAGAGAGCAAAGGCTGAGAACAAAACACATGGAATCGAGGAATTGAATAGAGTCAAGCAAATTAGGGTTGAACTTGAGAGATTACGCCTACTCTGCGAGAGAATCATCAAGCGTGAGAAGATCAAGAGGGACCTGGTTCTTTGTTCGCATGATGTTCTTGCTTTTAAAAGAGACCATGTAGCACGATCCGTACTAGTTCAGACTCCTTTCTTCCTACCAGAAGTTAGCTCTGAATCAGCTACCACATCATTAAAGGGGCACGTTGAGGATTTGAAATCGTGCAGTGAAGCTGTGCAGAGATCAGATGATTTAACCGTGGACAGCACAGTTTTCAGCAAGCACTGGAACAAAATACCAATGTCTTTGGACACTGAGCAAAAGACTGACGACGACAGTTCTACATCTCAGAATCCATTCCCCCAAAAAGTTGCAGACAGGGGTCAGTTTGCCGGGAAGCAAATACCGCAGAGATCTTTGACTACCACATCATCACGTAATCTTGTAGATGTTGGAGGATTGAAGTTTAAGTCAAGAAAGCATGCTGAGAAGTTTCAGAAAGAACTGGTAATGACATCCGACCAAGCATCAATGAAGAACTCTCTTTTACCTAAGCAGTACCTGTATGTTCCTGCTGATGTCCTTGCCAAGGAGAAGCAGGTCAACCAGGAAACAGGTTCTGCCGAGACACCGAAATGTGAGAGGTAG 4176 43.41 MTRDRCHLGKKMMGRGADGGCGAEERSCPVARVPNRVTLTHTQTHEDKLSTVDIDYYAQAQKALCERSPFDVAEETAAPYVPTLPSRLGSFLSRHTGGKKRQRKSNSGADKKSSRQGERSRGSNIWVETEEYFRDLTLSDVDTLRASSSFSGLGFRKCFSIPSSGNDSEANVGGSDNVSDEITDRAIIKDEVEDDRLGSDVGMVEASGSPLGDKGCSNLDSSPGLEWILGCRNKVSLTSERPSKKRKLLGGDAGLEKVLIVSPCDGNSSLCHFCSKGDTYKGVNPLVTCSCCYVVVHYKCYGIREKVNGSWSCSWCKQKDKINDSTKPCLLCPKQGGALKPVHKNVDSGFSVEFAHLFCSQWMPEVFIEDLTRMEPVMNLGGVKETRKKLVCNICKVKYGACLRCSHGTCRASFHPICAREARNRMEVWAKYGCDNVELRAFCSKHSESQYCRSSGRFQDPSEAVNSGSHVVNHLPMTLSVNRPQKLVGRRNIDNLILCKDASDSNPGKLDDGKLEDIGSSYPSLNADSDCVDTHKCTVQGVEDVIPLDSLKFATIMKKLIDQGKVNVKDVASEINIHPDLLCAKLTAENLVPDLKVKIVRWLKNHAYIGTLQKNLRVKLKSAALPKAVVGAANCSDSSSVPDSDDSNLVTDKMVIPQRKAKNTISLLKNDEIKSSSEEIVGGHGLAVQSGILDQKACEEQADSNKECIQDTGEKHLNEHESSQDSPSRNFPNYVEGDHLEVPISGHYSSISAVHGKPRESPDSYFHPYVQEKMAHMLDGKLLDVFEGEMSRWQASSNASVCCDHQHQYLECNDVSCKSGGFNPTQQMNKKISGIIKLSPEDEIEGEIIFYQHRLLANAVSRKRFTDHLICNVVKSLPKEIDEARSTRWDAVLINQYFSELREAKKQGKKERRHKEAQAVLAAATAAAAASSRMSSFRKDVYEESTHRELMPRAKETLTKVALPKASLESDFCKEHVRSCDICRRQETILKPILVCSSCKVAVHLDCYRTVKASSGPWCCELCEELSLSRGPGVPAVNLGEKSYFVAECGLCGGTTGAFRKSANGQWVHAFCAEWVFESTFKRGQANPVGGMETVSKGMDSCYICHRKYGVCLKCNYGHCQSAFHPSCARNAGCYMTVKTSGGKLQHRAYCEKHSTEQRAKAENKTHGIEELNRVKQIRVELERLRLLCERIIKREKIKRDLVLCSHDVLAFKRDHVARSVLVQTPFFLPEVSSESATTSLKGHVEDLKSCSEAVQRSDDLTVDSTVFSKHWNKIPMSLDTEQKTDDDSSTSQNPFPQKVADRGQFAGKQIPQRSLTTTSSRNLVDVGGLKFKSRKHAEKFQKELVMTSDQASMKNSLLPKQYLYVPADVLAKEKQVNQETGSAETPKCER 1391
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 18032803 18053643 - CmoCh04G024290.1 Cmo04g02429 381404

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g02429 1391 CDD ePHD 1049 1154 - -
Cmo04g02429 1391 MobiDBLite consensus disorder prediction 716 735 - -
Cmo04g02429 1391 SUPERFAMILY FYVE/PHD zinc finger 970 1024 IPR011011 -
Cmo04g02429 1391 CDD PHD_SF 979 1023 - -
Cmo04g02429 1391 ProSitePatterns Zinc finger PHD-type signature. 271 316 IPR019786 -
Cmo04g02429 1391 ProSiteProfiles Zinc finger PHD-type profile. 268 319 IPR019787 -
Cmo04g02429 1391 MobiDBLite consensus disorder prediction 1278 1322 - -
Cmo04g02429 1391 PANTHER PHD-FINGER DOMAIN CONTAINING PROTEIN FAMILY-RELATED 826 1380 - -
Cmo04g02429 1391 ProSitePatterns Zinc finger PHD-type signature. 980 1023 IPR019786 -
Cmo04g02429 1391 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 311 449 IPR013083 -
Cmo04g02429 1391 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1046 1157 IPR013083 -
Cmo04g02429 1391 Pfam PHD-finger 992 1024 - -
Cmo04g02429 1391 MobiDBLite consensus disorder prediction 103 118 - -
Cmo04g02429 1391 ProSiteProfiles Extended PHD (ePHD) domain profile. 326 447 IPR034732 -
Cmo04g02429 1391 PANTHER PHD FINGER PROTEINS 826 1380 - -
Cmo04g02429 1391 Coils Coil 1175 1195 - -
Cmo04g02429 1391 SMART PHD_3 391 447 IPR001965 -
Cmo04g02429 1391 SMART PHD_3 270 317 IPR001965 -
Cmo04g02429 1391 SMART PHD_3 1101 1155 IPR001965 -
Cmo04g02429 1391 SMART PHD_3 979 1024 IPR001965 -
Cmo04g02429 1391 ProSiteProfiles Extended PHD (ePHD) domain profile. 1046 1155 IPR034732 -
Cmo04g02429 1391 ProSiteProfiles Zinc finger PHD-type profile. 977 1026 IPR019787 -
Cmo04g02429 1391 Pfam PHD-zinc-finger like domain 1048 1154 - -
Cmo04g02429 1391 Pfam PHD-zinc-finger like domain 328 446 - -
Cmo04g02429 1391 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 959 1030 IPR013083 -
Cmo04g02429 1391 MobiDBLite consensus disorder prediction 84 123 - -
Cmo04g02429 1391 MobiDBLite consensus disorder prediction 1 24 - -
Cmo04g02429 1391 SUPERFAMILY FYVE/PHD zinc finger 260 335 IPR011011 -
Cmo04g02429 1391 PANTHER PHD FINGER PROTEINS 220 454 - -
Cmo04g02429 1391 PANTHER PHD-FINGER DOMAIN CONTAINING PROTEIN FAMILY-RELATED 220 454 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g02429 - - - bhj:120067860 2320.81
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g02429 Cmo-Chr4:18032803 Cmo08g00100 Cmo-Chr8:508906 1.07E-15 dispersed
Cmo04g02429 Cmo-Chr4:18032803 Cmo15g00736 Cmo-Chr15:3602594 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g332 . . . . . . . . Cmo04g02429 . . . . . . . . . . . . . . . . . . . . . . . . Cone17ag1260 Cone20ag0468 . . . . Blo17g00200 . . Bda13g01503 . Bpe14g00362 . Bma02g00243 . . . . . Car04g02243 Car15g00662 Cpe01g02018 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003906 1 3 1 1 1 2 2 2 1 1 1 1 2 1 1 2 2 2 2 2 1 1 1 2 2 2 1 1 1 1 44
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo04g02429 Cmo_Chr04 FPKM 1.299694 0.779121 0.0 0.133394 2.771673 0.820634 1.827567 0.0 0.0 0.0