Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g02441 ATGGCGGCTAACGGTTCCATCAGAAGTTCCGTCAAGGTACAATGGGAAGAGGAAGGCGAGGATGAGATCAACGACTTTCGTGATTTGATCCAGAAAGGAATCCGTGAATTAGAGCCGTCGATTCTCGACCCCAGACACGAAGGAACGGCTGATGATTGGATCGAGCGGAATTCTTCCATGGTCCGTCACACAGGAAAGCACCCTTTCAACTCGGAGCCGCCAATCAACCGTTTAACGCACTACGGCTTCATCACCCCGGTCCCACTCCACTTTGTTCGCAGCCGCGGCGCGGTCCCGAAGGCTACGTGGAACGACTGGACCGTTGAAGTATGTGGGCTCGTCAAACGGCCCACTAAGTTCACCATGGACCAATTGAGTAACGAGTTTGGGTTCCGGGAGTTTCCGGCGACGATTGTCTGCGCCGGCAACAGGCGGAAGGAGCAGAACACGGTGAAACAGACAATTGGGTTTAATTGGGGAGCGGCGGTGGTTGCCACGTCGGTCTGGGGAGGGGTCCCACTTCGTGACGTGTTGAACCGATGTGGAATTTTTAGCCGGAAGAATGGGGCGGTGAATGTATGCTTTGAAGGGGCGGAGGACTTGGCGGGAGGCGGTGGGTGTAAGTACGGGACGAGTATAAAAGTGGAGTTCGCTATGGATCCGGCGAGGGATATAATTTTGGCGTATAGACAAAACGGGGAGGAATTGGCGGCGGACCATGGTTTTCCGGTGAGGATGATAATGCCGGGATTCATCGGAGGTAAAATGGTGAAGTGGCTGAAACGGATCATTGTGACGACGAAAGAATCGGAAAGTTATTATTATTTAATGGACAACAAAGTTTTTCCATCCCACGTGGACGCTGAGCTGGCCGACAAAGAAGGTAATCTACAAGTAACAACGTTGTATGAATATGTGAGAAATCTGTCTTCACTTCCTTTTAAATTTAACATGTTTGAGAAATGGGTAGGTGGTGGAAAGAAGGTTACACGTGTGGAGGTGACAATGGACGGCGGAGAGAAATGGGACATGTGCATGTTGGATCATCCGGCGAAGCCGAACAAGTTTGGAAAGTACTGGTGCTGGTGTCTATGGTCGTTGGAGGTGGAGGTTTCGAAGTTGCTTAATGCCAAGGAGATCGCCGGATTGATGAACAACTGTTGGTTTAGAGTAAGAACGAAGATATGCAAACCCGACAAGGGAGAGACCGGAATCATCTTCGAACACCCGACAATCCCCGGCAACCAGTCCGGCGGATGGATGAAGAACAGCGCCTCCACTCCCTCCATCAACACCGCCTCCACCGCCTCCACCACCTACTCCTTATCCGAAGTCAAAAAACACAACACCCGTCAGTCCGCCTGGATTATCGTCCACGGCCACGTCTACGACTGTACCCAATTCATCAAACACCACCCCGGCGGCGTCGATAGCATCCTCAGCCACGCTGGCACCGACTGCACCGAAGTATTCGACGCCATCCACTCCGGCAAAGCCAAGAAAATGCTCGAAAATTACCGAATCGGAGATGTTCGTGGTGAATGCGAATCGGACGGGGGAGGATGTCCTGCTGAGGGAGAAGATGGACACGTGGACGGTCAAGAAGGAGAGATTGAAAGTTCGAGACCATATTCCGGCGGCGGCGGAGGACACTTTGGGCCGCCGGCGATGATTCAGCTGGCAGTGCAGACCAATTTGGAGAAGATGAATAACGACACCAAAAACTAG 1728 52.26 MAANGSIRSSVKVQWEEEGEDEINDFRDLIQKGIRELEPSILDPRHEGTADDWIERNSSMVRHTGKHPFNSEPPINRLTHYGFITPVPLHFVRSRGAVPKATWNDWTVEVCGLVKRPTKFTMDQLSNEFGFREFPATIVCAGNRRKEQNTVKQTIGFNWGAAVVATSVWGGVPLRDVLNRCGIFSRKNGAVNVCFEGAEDLAGGGGCKYGTSIKVEFAMDPARDIILAYRQNGEELAADHGFPVRMIMPGFIGGKMVKWLKRIIVTTKESESYYYLMDNKVFPSHVDAELADKEGNLQVTTLYEYVRNLSSLPFKFNMFEKWVGGGKKVTRVEVTMDGGEKWDMCMLDHPAKPNKFGKYWCWCLWSLEVEVSKLLNAKEIAGLMNNCWFRVRTKICKPDKGETGIIFEHPTIPGNQSGGWMKNSASTPSINTASTASTTYSLSEVKKHNTRQSAWIIVHGHVYDCTQFIKHHPGGVDSILSHAGTDCTEVFDAIHSGKAKKMLENYRIGDVRGECESDGGGCPAEGEDGHVDGQEGEIESSRPYSGGGGGHFGPPAMIQLAVQTNLEKMNNDTKN 575
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 18089704 18092005 + CmoCh04G024410.1 Cmo04g02441 381416

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g02441 575 PANTHER NADH-CYTOCHROME B5 REDUCTASE 553 575 IPR001834 GO:0016491
Cmo04g02441 575 PANTHER NADH-CYTOCHROME B5 REDUCTASE 26 519 IPR001834 GO:0016491
Cmo04g02441 575 MobiDBLite consensus disorder prediction 523 537 - -
Cmo04g02441 575 PANTHER NITRATE REDUCTASE 26 519 - -
Cmo04g02441 575 PANTHER NITRATE REDUCTASE 553 575 - -
Cmo04g02441 575 MobiDBLite consensus disorder prediction 517 550 - -
Cmo04g02441 575 Gene3D - 322 380 - -
Cmo04g02441 575 Gene3D - 381 439 - -
Cmo04g02441 575 ProSitePatterns Cytochrome b5 family, heme-binding domain signature. 468 475 IPR018506 GO:0020037
Cmo04g02441 575 Gene3D - 440 515 IPR036400 -
Cmo04g02441 575 Pfam Cytochrome b5-like Heme/Steroid binding domain 441 511 IPR001199 -
Cmo04g02441 575 SUPERFAMILY Cytochrome b5-like heme/steroid binding domain 436 514 IPR036400 -
Cmo04g02441 575 SUPERFAMILY E set domains 322 394 IPR014756 -
Cmo04g02441 575 Pfam Oxidoreductase molybdopterin binding domain 96 274 IPR000572 -
Cmo04g02441 575 SMART Cyt_b5_2 440 512 IPR001199 -
Cmo04g02441 575 ProSitePatterns Eukaryotic molybdopterin oxidoreductases signature. 112 147 IPR022407 GO:0043546
Cmo04g02441 575 Gene3D - 45 297 IPR036374 -
Cmo04g02441 575 PRINTS Eukaryotic molybdopterin domain signature 162 177 IPR008335 GO:0016491
Cmo04g02441 575 PRINTS Eukaryotic molybdopterin domain signature 331 343 IPR008335 GO:0016491
Cmo04g02441 575 PRINTS Eukaryotic molybdopterin domain signature 147 159 IPR008335 GO:0016491
Cmo04g02441 575 PRINTS Eukaryotic molybdopterin domain signature 358 368 IPR008335 GO:0016491
Cmo04g02441 575 PRINTS Eukaryotic molybdopterin domain signature 220 236 IPR008335 GO:0016491
Cmo04g02441 575 PRINTS Eukaryotic molybdopterin domain signature 83 99 IPR008335 GO:0016491
Cmo04g02441 575 PRINTS Eukaryotic molybdopterin domain signature 253 266 IPR008335 GO:0016491
Cmo04g02441 575 PRINTS Eukaryotic molybdopterin domain signature 136 147 IPR008335 GO:0016491
Cmo04g02441 575 PRINTS Eukaryotic molybdopterin domain signature 61 75 IPR008335 GO:0016491
Cmo04g02441 575 PRINTS Eukaryotic molybdopterin domain signature 237 250 IPR008335 GO:0016491
Cmo04g02441 575 ProSiteProfiles Cytochrome b5 family, heme-binding domain profile. 437 512 IPR001199 -
Cmo04g02441 575 SUPERFAMILY Oxidoreductase molybdopterin-binding domain 44 290 IPR036374 -
Cmo04g02441 575 Pfam Mo-co oxidoreductase dimerisation domain 322 380 IPR005066 GO:0016491|GO:0030151
Cmo04g02441 575 PRINTS Cytochrome B5 signature 472 486 IPR001199 -
Cmo04g02441 575 PRINTS Cytochrome B5 signature 487 494 IPR001199 -
Cmo04g02441 575 PRINTS Cytochrome B5 signature 462 472 IPR001199 -
Cmo04g02441 575 PRINTS Cytochrome B5 signature 499 511 IPR001199 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g02441 K10534 NR; nitrate reductase (NAD(P)H) [EC:1.7.1.1 1.7.1.2 1.7.1.3] - csv:101219000 759.599
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo04g02441 Cmo09g00648 CCT
Cmo04g02441 Cmo15g00727 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g02441 Cmo-Chr4:18089704 Cmo15g00729 Cmo-Chr15:3567136 0 dispersed
Cmo15g00726 Cmo-Chr15:3541728 Cmo04g02441 Cmo-Chr4:18089704 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g325 . . . . . . . . Cmo04g02441 Cmo15g00727 . Cma09g00664 . . . Cpe06g00519 . . . . . . . . . . . . . . . . . . Cone20ag0466 Lsi04g02366 Csa04g01830 . . Blo17g00195 Blo18g00197 . Bda13g01500 Bpe02g01621 Bpe14g00366 Bma01g00839 Bma02g00239 Sed04g0506 . Cmo09g00648 . . Car04g02252 Car09g00590 Cpe01g02024 . Bhi09g02640 Tan01g3984 Cmetu09g0993 . Hepe01g2257 Mch11g0805 . Cla11g01515 Cam11g1575 Cec11g1604 Cco11g1602 Clacu11g1730 Cmu11g1548 Cre11g1965 . . Chy07g00682 Cme07g00892
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000829 1 3 2 3 2 2 4 3 3 3 3 3 4 2 3 6 3 1 4 3 5 4 3 3 3 4 3 3 3 1 90
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo04g02441 Cmo_Chr04 FPKM 2256.281738 2301.744141 1386.483765 1348.080933 37.165432 29.510273 30.250189 1117.601318 1227.643555 1089.033569