Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g02442 ATGGCCGATCACCACCACCACCATCACCATATTAACCCTCCTCCCTCATTTTCCCTCATCCCCATTTCATTTCATTACAACCCACTCATGGCCGTAGCCTCAAATCCCTTGAATCCCAACGCCGACCCCTTCCTATTTCAACCTTCCTCCTTCCTCCCCCCTCCGCCTCCTTCTCCGCCGCATGTTGCCGCTTCGCTTCTTTCAGTGTACGACAATTTCTACTACCCATTTGCGTCCACGCCTTACTATTGGCAATTCCATACTTATCCCGCCATTACCTGCTACAACGCTTTGCCGCCGTGTCAGGCAATGGCAGTGGGCTGCGCCCGTGACGCTATAACGGATTCAAAGCATGTCTTCAAAACAGAGTGTCGTAGGTTCAAAGGGGAATTCGTGGTTTCCTGTGGCCCTCGAAGAGTGACCAAATCTCCGCCGAAATGGGTCGAGAAAAAAATCGGTAGCGCCGTCGGCCACGGCGGCGGTGACCCAGTTGAGAAAACTGATCATTGCCCAGTGGGTGGCTCTGGAATCACTACAGTGATGATAAAAAACATCCCCAACCAGTTCAAGCGGCGTGATCTTCTGAAGTTGCTGGACAGATACTGTCAAGTGATGAACCAACCGAGCGATTCTCGATCTGATTTCTCTGCTTCTGAATATGATTTTGTTTATTTGCCAATGGATTTCAGGAGATCTTGGTATGAAGGGAAAGTATCGAATTTGGGTTATGCGTTCGTGAACTTCTTAACTTCCATGGCTGCCTCTCAGTTTTGTGCTGTTTATAACAATTACAAATGGGATGTTAATGTCAACAAGAAGATTTGTGAGGTCACTGACGCTAGAATTCAGGGAAAGGAGGCTTTGAAGAATGCGTTCAAGAACAAGATCTTCTGGTGTCGAACCGATCAATATTTGCCCGTGATGTTATCTCCAGCAAGCGACGGTCATCGACGTTACCGAATGGTTAATGTCGGGAGGCGCATTCCCAGGGTACCTCGCAAGCCGCTCAAGAAGTCGAGCAGCTGA 1026 48.93 MADHHHHHHHINPPPSFSLIPISFHYNPLMAVASNPLNPNADPFLFQPSSFLPPPPPSPPHVAASLLSVYDNFYYPFASTPYYWQFHTYPAITCYNALPPCQAMAVGCARDAITDSKHVFKTECRRFKGEFVVSCGPRRVTKSPPKWVEKKIGSAVGHGGGDPVEKTDHCPVGGSGITTVMIKNIPNQFKRRDLLKLLDRYCQVMNQPSDSRSDFSASEYDFVYLPMDFRRSWYEGKVSNLGYAFVNFLTSMAASQFCAVYNNYKWDVNVNKKICEVTDARIQGKEALKNAFKNKIFWCRTDQYLPVMLSPASDGHRRYRMVNVGRRIPRVPRKPLKKSSS 341
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 18092925 18094603 - CmoCh04G024420.1 Cmo04g02442 381417

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g02442 341 Pfam RNA recognition motif 2 178 292 IPR007201 -
Cmo04g02442 341 Gene3D - 176 274 IPR012677 -
Cmo04g02442 341 PANTHER RNA BINDING PROTEIN 35 326 - -
Cmo04g02442 341 PANTHER MEI2 C-TERMINAL RRM ONLY LIKE 1 35 326 - -
Cmo04g02442 341 SUPERFAMILY RNA-binding domain, RBD 171 267 IPR035979 GO:0003676
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g02442 - - - cmo:103503409 399.053
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo01g01455 Cmo04g02442 CCT
Cmo04g02442 Cmo15g00723 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g02442 Cmo-Chr4:18092925 Cmo05g00060 Cmo-Chr5:217384 1.86E-21 dispersed
Cmo01g01455 Cmo-Chr1:11352770 Cmo04g02442 Cmo-Chr4:18092925 9.18E-65 wgd
Cmo15g00723 Cmo-Chr15:3531267 Cmo04g02442 Cmo-Chr4:18092925 1.71E-136 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g322 . . . . Bpe02g00079 . . . Cmo04g02442 Cmo15g00723 Cma01g01405 . . . . . . . . . . . . . . . . . . . . . Cone7ag1556 . . Lsi04g02370 . . . Blo17g00192 . . Bda13g01498 . Bpe14g00368 . Bma02g00237 Sed01g3032 Cmo01g01455 . . . Car04g02253 Car15g00654 Cpe01g02025 Cpe02g00537 Bhi09g02643 Tan01g3987 Cmetu07g0205 . Hepe01g2260 Mch11g0810 . Cla11g01518 Cam11g1578 Cec11g1607 Cco11g1606 Clacu11g1733 Cmu11g1551 Cre11g1970 . . Chy07g00677 Cme07g00882
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002374 1 2 1 1 2 1 3 2 1 2 2 2 3 2 2 3 2 1 3 2 3 2 2 2 2 2 2 3 2 1 59
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo04g02442 Cmo_Chr04 FPKM 5.61515 5.516077 11.947003 11.388219 7.469967 5.87295 7.381183 6.11623 6.040485 6.527339