Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g02449 ATGGCATCTGCCATGGCTAAACCCAAAACACAGAGAAAGCTTACCAGACAGAGCCATGAAAACCAGAAACCAAAGGCGCAGAAGGCAGAGAAGCCGCCGTCTTGGGCAGTTGTTAGAGGCATATTCAGCTGTAAGTACCTGCAGCCTCAACAACAACAACAGAATCAATTGCCACGCAAAGAGAAACAAACGGAGCAAGCAACAGAAGAGAGTAGCAAGAACTGTAAGAAAATGAGGTGTTCGGGTTCACTGTGTAGCAACACTAAGGTAACATACAGGCTTGAAGTAGCAGCATCACCGGATGCTCACAAGAAAAGGGCATTGGCTTCTTCAATGGGTTCTAAAAACAATGAGTCCTTAAGTTCAAGTAGATCCACAAAAGCTCCTCCTTTGAACGAACAAAATGGTGTTCTATCAGCCACAACTTCATCGTTATCTGCATCATCTTCTTCCAATTCCTCCAATGGTACCTCTTTCAGGGGAATGCCTTTCAGGAGATTCTATGGCTGTTATGAATGTAAAATGGTGATTGACCCTGTTCTTGGGATGACTAGAGATCCTTCTCTTAGAGCAACTATTTTCCCTTGTCCTGAATGTGGGGAGATTTTCATGAAAGCTCAAGCTTTAGAGCTTCACCAGAGTGTTAGACATGCAGTATCTGAACTTGGTCCTGAAGACACAAGCAAGAACATAGTGGAAATCATATTCCAGTCGAGCTGGCTAAAAAAGCAAGCCCCAATTTGCAAAATTGAAAGGATTCTCAAAGTCCAGAACACTGCAAAGACCATCTCGAAATTCGAGGAATACAGAGACTCCATTAAAGCCAAAGCCATAAAGCTTTCAAAGAAGCATCCACGATGCATAGCAGATGGCAACGAACTCTTAAGGTTCCACTGCACCACCTTGGCCTGCTCATTGGGCCTTAATGGCTCCTCCAACCTCTGCAGTTCAATACCACAATGCAATGTCTGTAGCATAATCAAGAATGGGTTCAAGGTGGCGGCAGAGGCCACTGGAGGGGACGCTGGAAAGGGGATTCTAACAACAGCAACAAGTGGAAAGGCTCATGACAGTGCCGGAATATCATCGGACGGCAATGACAAAAGGGCAATGCTGGTTTGCCGAGTAATAGCTGGTAGGGTGAAGAAAAGTTCAGAAGGCACTATGGAGGATTATGACTCATTGGCCGGAGCAGCAGGCATGTATTCCAATTTGGATGAGTTATACGTGTTCAGTCCCAAGGCAATATTGCCCTGTTTTGTTGTCATTTATGGAGGGTTTTAA 1284 44.94 MASAMAKPKTQRKLTRQSHENQKPKAQKAEKPPSWAVVRGIFSCKYLQPQQQQQNQLPRKEKQTEQATEESSKNCKKMRCSGSLCSNTKVTYRLEVAASPDAHKKRALASSMGSKNNESLSSSRSTKAPPLNEQNGVLSATTSSLSASSSSNSSNGTSFRGMPFRRFYGCYECKMVIDPVLGMTRDPSLRATIFPCPECGEIFMKAQALELHQSVRHAVSELGPEDTSKNIVEIIFQSSWLKKQAPICKIERILKVQNTAKTISKFEEYRDSIKAKAIKLSKKHPRCIADGNELLRFHCTTLACSLGLNGSSNLCSSIPQCNVCSIIKNGFKVAAEATGGDAGKGILTTATSGKAHDSAGISSDGNDKRAMLVCRVIAGRVKKSSEGTMEDYDSLAGAAGMYSNLDELYVFSPKAILPCFVVIYGGF 427
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 18141668 18143566 + CmoCh04G024490.1 Cmo04g02449 381424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g02449 427 Gene3D - 218 425 - -
Cmo04g02449 427 MobiDBLite consensus disorder prediction 110 157 - -
Cmo04g02449 427 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 34 424 - -
Cmo04g02449 427 MobiDBLite consensus disorder prediction 13 27 - -
Cmo04g02449 427 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 34 424 - -
Cmo04g02449 427 MobiDBLite consensus disorder prediction 101 157 - -
Cmo04g02449 427 SUPERFAMILY ADP-ribosylation 219 425 - -
Cmo04g02449 427 Coils Coil 50 70 - -
Cmo04g02449 427 MobiDBLite consensus disorder prediction 48 73 - -
Cmo04g02449 427 ProSiteProfiles Zinc finger C2H2 type domain profile. 194 222 IPR013087 -
Cmo04g02449 427 MobiDBLite consensus disorder prediction 1 34 - -
Cmo04g02449 427 ProSitePatterns Zinc finger C2H2 type domain signature. 196 217 IPR013087 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo04g02449 Cmo15g00715 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g01591 Cmo-Chr2:9181134 Cmo04g02449 Cmo-Chr4:18141668 1.08E-34 dispersed
Cmo04g02449 Cmo-Chr4:18141668 Cmo09g00104 Cmo-Chr9:494843 1.60E-109 dispersed
Cmo15g01203 Cmo-Chr15:8339531 Cmo04g02449 Cmo-Chr4:18141668 3.03E-34 dispersed
Cmo15g00715 Cmo-Chr15:3476055 Cmo04g02449 Cmo-Chr4:18141668 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9708 None None None None Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g02449 - - bhj:120067077 715.301