Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g02450 ATGATCAATGTCTGGACTGGAGAGCTTGATTTGAAGCCGAAGTTGGAGAAGCAAGTGCAGAAAGCCATAAGAAACTCGCAAAACTCTGTTTCCTCTTCCTGCCGATTTCAGACATTCTTAACATTGGCAACAGAGCTCGAAATGCTCTGCCCCATCAAAACCCACCTTCCGCCGCTTGTCCATGCTACACCACCGTCATATTCTTACGTACGAACATGCCTGCAGAAGGATAGTATAATTCCCACGTTTTTGTTACTCATGTTTACGAACTGCATAGCGAAGGAATTGCGCCATTGCGCGCAAGTTAGAGCTTTCAGGCGAGGCAATTCCCTTCATGCTTACTTGAGGAAATTTGGGTGTTTGAACGATGTGTTTATTGCGAACAATTTGATTTCGATGTACGCGGAGTTTTCGAATTTACGAGATGCAGAGAAGGTGTTTGATGAAATGTCTGACAGAAATATTGTTACTTGGACCACCCTGGTTTCTGCATTTACTGATAGTGGAAGACCTTATGAGGCACTCCGAGTGTATGATGATATGCCGAAATCTGAGACGGCCAATGGGTACATGTATTCCGCGGTTTTGAAGGCATGTGGGCTTGTGGGTGATTTGGATCGGGGTAAGTTAATTCAAGAAAGAATATATGGGGGTAAGTTGCAGGGTGATACTATTTTGATGAATTCTCTTATGGATATGTATGTGAAATGTGGAAGCTTGAGTGATGCGGTGAAGGTTTTTCACAATATTTCACGTGCGACCACAACTACTTGGAATATCATTATTTCTGGGTATAGTAAGGCCGGTTTGATGGTGGAGGCTGAAAAACTTTTTCATTGTATGCCACAGCCAAATGTTGTGTCTTGGAACAGCATGATTGCTGGCTTTGCAGACAATGGGAGTCAGCGGGCGTTGGAATTTGTGTCCTTGATGCACAGAAAGGGAATTAAGCTTGATGATTTCACATTTCCATGTGCTTTAAAGATCAGTGCGCTTCATGGGTTATTAGTCATCGGGAAACAAATTCATTCCTATGTCACCAAATTGGGGCATGGATCTAGTTGTTTTACACTGTCTGCTCTGATTGATATGTATTCAAATTGCAATGGCCTGACCGAAGCAGTCAAGTTGTTTGACCAACACTCTTCCTTCAACCCTTCCATTTCTGAGAACCTGGCACTGTGGAACTCGATGCTCTCAGGATATGTTATCAACAACTGTGACCAAGCTGCTTTGAATTTGATTTCATACATCCATTGCTCGGGTACGATATTGGACTCTTACACCTTTGGTGGTGCTTTAAAGGTTTGCATCAACTTATTAAATCCGAGGGTTGGTTTTCAAGTACATGGTCTTATTGTCACTTGTGGTTATGAATTGGATTATGTTGTTGGAAGCATTGTTGTGGATCTCTATGCAAAACTAGGACGCATCGACGATGCATTAGCACTGTTCCATAGGCTTCCAAGGAAAGATATCATAGCCTGGTCCGGTTTGATCCTGGGGTGTGCTCAAATGGGATTGAACTGGTTAGCTTTCTCAGTGTTCAAAGATATGCTCGAGTTGGCTCATGAAATAGATCATTTTGTCATTTCAACCACTCTGAAAGTCTGCTCCAATTTAGCATCTCTTAGAAGTGGAAAGCAGGTCCATGCATTCTGTGTCAAAAGTGGGTATGAAATGGAGGGGTTCACAATAACATCCCTTCTTGATATGTATTCAAAATGCGGTGAAATTGAGGATGCATTAACATTGTTTGATTGTATACAAGAAAAAGACATAGTAACTTGGACTGGGATCATTGTAGGATGTGGACAAAATGGAAGGGCGGCAGAAGCTGTCAGGTTTTTTCATGAGATGATTCAATCAGGGCTAAATCCAAATGAAATCACCTTTCTAGGGGTGCTTTCTGCATGTCGATATGCTGGTTTGATCGAAGAGGCACGAAACATATTTAATTCCATGAAATCTGTATATGGACTAGAGCCTCATTTAGAGCATTATTGCTGCATGGTTGATCTTCTTGCTCTAGCTGGGCTACCTGAAGAAGCTGAAAAATTGATAGCAAATATGCCGTTTGAGCCAGATCAGACCACATGGCGCACTTTGCTAGGGGCGTGTGGAACTCGTAACGATACCAAGCTTATTAACAGTGTTGCTAATGGCCTTCTTGAAGCTACACCAGATGACCCTTCAACGTACGTGTCACTTTCAAATGCTTATGCGTCGCTGGGGATGTGGCATAACCTAAGCAAAGCGAGGGAGGCTGCCAAAAAGGTGGGAGTCAAAAGAGCTGGGTTAAGCTGGATTGAGTCATCCCATGCAATTGGTAAAGTGAACACACATGAAAAGGAGTGGCCGCTCTTGCTACCAAAGTTCAAAGAGACTCCACCTTTATGTCTATGA 2406 42.85 MINVWTGELDLKPKLEKQVQKAIRNSQNSVSSSCRFQTFLTLATELEMLCPIKTHLPPLVHATPPSYSYVRTCLQKDSIIPTFLLLMFTNCIAKELRHCAQVRAFRRGNSLHAYLRKFGCLNDVFIANNLISMYAEFSNLRDAEKVFDEMSDRNIVTWTTLVSAFTDSGRPYEALRVYDDMPKSETANGYMYSAVLKACGLVGDLDRGKLIQERIYGGKLQGDTILMNSLMDMYVKCGSLSDAVKVFHNISRATTTTWNIIISGYSKAGLMVEAEKLFHCMPQPNVVSWNSMIAGFADNGSQRALEFVSLMHRKGIKLDDFTFPCALKISALHGLLVIGKQIHSYVTKLGHGSSCFTLSALIDMYSNCNGLTEAVKLFDQHSSFNPSISENLALWNSMLSGYVINNCDQAALNLISYIHCSGTILDSYTFGGALKVCINLLNPRVGFQVHGLIVTCGYELDYVVGSIVVDLYAKLGRIDDALALFHRLPRKDIIAWSGLILGCAQMGLNWLAFSVFKDMLELAHEIDHFVISTTLKVCSNLASLRSGKQVHAFCVKSGYEMEGFTITSLLDMYSKCGEIEDALTLFDCIQEKDIVTWTGIIVGCGQNGRAAEAVRFFHEMIQSGLNPNEITFLGVLSACRYAGLIEEARNIFNSMKSVYGLEPHLEHYCCMVDLLALAGLPEEAEKLIANMPFEPDQTTWRTLLGACGTRNDTKLINSVANGLLEATPDDPSTYVSLSNAYASLGMWHNLSKAREAAKKVGVKRAGLSWIESSHAIGKVNTHEKEWPLLLPKFKETPPLCL 801
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 18145477 18148715 - CmoCh04G024500.1 Cmo04g02450 381425

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g02450 801 Pfam PPR repeat family 592 639 IPR002885 -
Cmo04g02450 801 Gene3D Tetratricopeptide repeat domain 639 786 IPR011990 GO:0005515
Cmo04g02450 801 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 593 627 IPR002885 -
Cmo04g02450 801 TIGRFAM PPR: pentatricopeptide repeat domain 257 279 IPR002885 -
Cmo04g02450 801 TIGRFAM PPR: pentatricopeptide repeat domain 595 629 IPR002885 -
Cmo04g02450 801 TIGRFAM PPR: pentatricopeptide repeat domain 128 156 IPR002885 -
Cmo04g02450 801 TIGRFAM PPR: pentatricopeptide repeat domain 156 184 IPR002885 -
Cmo04g02450 801 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 113 169 - -
Cmo04g02450 801 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 169 273 - -
Cmo04g02450 801 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 388 770 - -
Cmo04g02450 801 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 123 153 IPR002885 -
Cmo04g02450 801 Pfam PPR repeat 257 282 IPR002885 -
Cmo04g02450 801 Pfam PPR repeat 467 492 IPR002885 -
Cmo04g02450 801 Pfam PPR repeat 128 155 IPR002885 -
Cmo04g02450 801 Pfam PPR repeat 227 249 IPR002885 -
Cmo04g02450 801 Pfam PPR repeat 156 184 IPR002885 -
Cmo04g02450 801 Pfam PPR repeat 495 521 IPR002885 -
Cmo04g02450 801 Pfam PPR repeat 357 379 IPR002885 -
Cmo04g02450 801 Pfam PPR repeat 287 315 IPR002885 -
Cmo04g02450 801 Pfam PPR repeat 667 691 IPR002885 -
Cmo04g02450 801 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 274 381 - -
Cmo04g02450 801 Gene3D Tetratricopeptide repeat domain 77 217 IPR011990 GO:0005515
Cmo04g02450 801 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 254 288 IPR002885 -
Cmo04g02450 801 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 461 495 IPR002885 -
Cmo04g02450 801 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 154 184 IPR002885 -
Cmo04g02450 801 Pfam E motif 715 771 IPR046848 -
Cmo04g02450 801 PANTHER BNAC03G28070D PROTEIN 274 381 - -
Cmo04g02450 801 PANTHER BNAC03G28070D PROTEIN 113 169 - -
Cmo04g02450 801 PANTHER BNAC03G28070D PROTEIN 169 273 - -
Cmo04g02450 801 PANTHER BNAC03G28070D PROTEIN 388 770 - -
Cmo04g02450 801 Gene3D Tetratricopeptide repeat domain 219 342 IPR011990 GO:0005515
Cmo04g02450 801 Gene3D Tetratricopeptide repeat domain 548 638 IPR011990 GO:0005515
Cmo04g02450 801 Gene3D Tetratricopeptide repeat domain 444 547 IPR011990 GO:0005515
Cmo04g02450 801 Gene3D Tetratricopeptide repeat domain 343 443 IPR011990 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g02450 - - - bhj:120067076 1268.45
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g02450 Cmo-Chr4:18145477 Cmo03g00114 Cmo-Chr3:1585986 2.56E-47 dispersed
Cmo04g02450 Cmo-Chr4:18145477 Cmo15g00165 Cmo-Chr15:765710 1.77E-113 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g313 . . . . . . . . Cmo04g02450 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo18g00193 . Bda01g01413 Bpe02g01626 . . . . . . . . Car04g02262 . Cpe01g02030 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009162 1 3 1 0 1 1 2 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo04g02450 Cmo_Chr04 FPKM 9.130435 10.403521 8.260567 5.610233 8.242071 6.469111 8.313068 3.618145 4.198284 6.894506