Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g02452 ATGGCTCCACCTCTTCATCAAATCTCTCTCTTTTTCTTCATTCTAATCATTTTCTCATCAGAAATAAGAACATCGGAGAGCTCTCGAACTTTCACCATAATAAACAACTGCAAAGAAACGATCTGGCCGGCGATCTTCCCAGGAGAGCATTTCAACGGCGGCGGTTTTGCACTAAAACGCGGTCAATCCATAGTTTTCAAGGCGCCAGTAGGCTGGTCCGGTCGGATATGGGGTCGAACCGGTTGCAACTTCGACCAGACCGGAAACGGGCAATGCCAAACCGGTGCCTGCGGAACTTCCCTCAAATGTCAAGGCTCTGGAGAGACTCCGGCATCCCTCGCCGAATTCACCCTCGCTGCCCTCGATTTTTACGACGTCAGCCTCGTCGACGGCTTCAATTTGCCTATGGCGGTGACGCCAATCAACGGAACCGGAAAGTGCGGCCTGGCCGGCTGCGATAGCGATTTGAGATCCAATTGCCCGTCGGCATTGGCGGTGAAATCGAAAGGGAAAGTCATCGCCTGCCGGAGCGCCTGCGATGTGTTTAACACCGATGAGTACTGTTGCAGAGGATCTTATGGGAATCCGTCGACTTGCCGGCCGACGGTTTACTCTAAGAAATTTAAGGAGGCGTGTCCGACGGCGTATAGTTATGCGTACGATGATCCGACCAGTATTTTCACCTGCAACGCCGCCGATTACGTCGTCAGCTTTTGCTCCGGCAGGAACCACAAGGTGTGTAGTTACCATGACCACAAGCTCGTCTGCAGTGGTTCAAATGGCTTGAAATCGTTCGTCGTAGGGTGGTGGCCTCTAATGACAGCTGTTTTAATTGTGATCAATTTATGGGTTCTTTTTTAA 861 51.22 MAPPLHQISLFFFILIIFSSEIRTSESSRTFTIINNCKETIWPAIFPGEHFNGGGFALKRGQSIVFKAPVGWSGRIWGRTGCNFDQTGNGQCQTGACGTSLKCQGSGETPASLAEFTLAALDFYDVSLVDGFNLPMAVTPINGTGKCGLAGCDSDLRSNCPSALAVKSKGKVIACRSACDVFNTDEYCCRGSYGNPSTCRPTVYSKKFKEACPTAYSYAYDDPTSIFTCNAADYVVSFCSGRNHKVCSYHDHKLVCSGSNGLKSFVVGWWPLMTAVLIVINLWVLF 286
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 18152431 18154979 - CmoCh04G024520.1 Cmo04g02452 381427

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g02452 286 CDD TLP-PA 30 239 - -
Cmo04g02452 286 PANTHER PATHOGENESIS-RELATED THAUMATIN SUPERFAMILY PROTEIN 9 253 - -
Cmo04g02452 286 ProSiteProfiles Thaumatin family profile. 28 239 IPR001938 -
Cmo04g02452 286 Gene3D Thaumatin 29 239 IPR037176 -
Cmo04g02452 286 PRINTS Pathogenesis-related protein signature 75 86 IPR001938 -
Cmo04g02452 286 PRINTS Pathogenesis-related protein signature 122 138 IPR001938 -
Cmo04g02452 286 PRINTS Pathogenesis-related protein signature 54 63 IPR001938 -
Cmo04g02452 286 PRINTS Pathogenesis-related protein signature 30 42 IPR001938 -
Cmo04g02452 286 PRINTS Pathogenesis-related protein signature 230 239 IPR001938 -
Cmo04g02452 286 PRINTS Pathogenesis-related protein signature 88 117 IPR001938 -
Cmo04g02452 286 SUPERFAMILY Osmotin, thaumatin-like protein 29 240 IPR037176 -
Cmo04g02452 286 PANTHER OS03G0233200 PROTEIN 9 253 IPR001938 -
Cmo04g02452 286 SMART tha2 31 240 IPR001938 -
Cmo04g02452 286 PIRSF PR5 3 279 IPR001938 -
Cmo04g02452 286 Pfam Thaumatin family 35 239 IPR001938 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g02452 - - - cmos:111464513 589.726
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo04g02452 Cmo15g00713 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g02452 Cmo-Chr4:18152431 Cmo17g00917 Cmo-Chr17:8215023 4.27E-84 dispersed
Cmo15g01273 Cmo-Chr15:8708248 Cmo04g02452 Cmo-Chr4:18152431 4.87E-45 dispersed
Cmo15g01274 Cmo-Chr15:8711302 Cmo04g02452 Cmo-Chr4:18152431 2.84E-53 dispersed
Cmo16g00402 Cmo-Chr16:1849727 Cmo04g02452 Cmo-Chr4:18152431 7.63E-120 transposed
Cmo15g00713 Cmo-Chr15:3469520 Cmo04g02452 Cmo-Chr4:18152431 9.18E-167 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g310 . . . . . . . . Cmo04g02452 Cmo15g00713 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo17g00186 . . Bda13g01491 Bpe02g01628 Bpe14g00373 . Bma02g00227 . . . . . Car04g02271 Car15g00645 Cpe01g02032 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006626 1 1 2 1 2 1 2 1 1 2 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 3 1 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo04g02452 Cmo_Chr04 FPKM 14.867664 15.709112 13.816106 14.311845 10.806953 9.206031 10.748653 27.43091 30.657057 26.644293