Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g02458 ATGAGGGGATCTGTTGAGCAATCCACTTCCGAGAGGAACGAGGATGGCGGAAAGGAGTGGAAGAAGAAGGATCGTTCTAATTGGCGGTCTGAGCAGAAGGCCTCTATTTGGAGGGCAGTGTCTTGCAGTTCAGTCAATGAAATACCGAGGGAAGCATCAGAGTGCATGGAAAATTGTAGAATTGATGCTAACTTAACAGAACCCTCATTTTATTCTTCTTTGACTCAACATGCATGTCAATCAAATCAGCCAACCGAGCCTGGTTTCACCGGAAGAAATAAGCTTTCCTTTAGTTCTTTGTCCCCTCTGCATATTGGCCAACAAGCAGAATGGTCACAAAATTTGAGAAACCAGCATCATTCCATGGATACTGGTCGATGGGCTATAACATCATGTCCGGAACAGATTGCCAGTGGAAGTATGCCTTGGATACCTATGAACCAGCATTCGCCTCCTGCTGATGTAAACAGTCAAATGAAATATTTTACGTCTCACTGGTCCCTGGATGATGTCACTAGAGGCTTACAGAAAGGCGACATATTTAAAGCTTTGTTTCGTATGAATGCTCACTATAGAGTTGAGGCCTACTGCAAAATTGATGGAATACCAGTTGATGTCTTAATCTATGGAAGTGCGTCTCAGAACAGAGCTGTGGAAGGAGACATAGTTGCAATGAAGATGAATCCTTTTTCGTTATGGAGTAGGATGAAAGGCACTAGTGAGGCCCATGACAATATGCATTCACTGGAAGATGCCAATGTTATGTCCGACAGTTTTTGGAGTTCCCCTTCAGTTGATCCCATTGGCAGGATCTGTGCAGTGATTGATTTATTTCCTACAAAAAGACCAACTGGTAAGGTAGTAGCCATCCTAAAGAAGTCTCGGCAGCGAGGAACTATTGTTGGCCATCTTAATGTCAAGAAATTCCTCTCCTTTCATGATTGTGGATATGTCCAATTGATGCCTAACGATGCAAAATTCCCGACAATGATGGTTTGTGCAGTCGATTTACCCGACTGCATCAAGAAGAGATTGGACAATGGTGATGCCACAGTTGAAAGTGAGCTGGTGGCTGCACGGATTGATGAATGGCTTGAAGAGAGTTCAGCTCCAAAAGCACTTGTCATGTATGTTCTAGGACGGGGAAGTAGAATAGAGTCTCATATTGATGCTATTTTATTTCAAAATGCAATTCTTACATGTGAATTCTCTCGTGATTCATTGTCTTGTCTCCCTCATACCCCTTGGAAGATCCCACAAGAGGAACTTCAATGCAGAAGAGATCTAAGAAACTTATGCATATTTACTATTGATCCTCCATCTGCCTTGGATCTTGATGATGCTTTCTCGGTTCAAAAGTTAGCCAATGGTATCTTTAGAGTAGGCATTCATGTTGCTGATGTATCACATTTTGTATTGCCAGACACTGCCTTAGATAAAGAGGCTCGAATCCGATCGACAAGTGTTTATCTTCTACGACGCAAGATACCAATGTTGCCACCATTACTCTCTGAGAATATTGGTTCACTTAACCCCGGAGTGGATCGACTTGCGTTTTCATTGTTTTTGGACATCAACCATTGTGGAGATGTCGAAGATTGTTGGATTGGCCGTACTGTGATATGCTCTTGCTGCAAACTCTCATATGGACATGCTCAGGACATTATTGACAGTTCAAAGGTTTTAGGACATTGTGTTCCCCAGTTGCATGGCCAGTCTACATGGCTTGATATCATTTCATCTGTTAGAACTCTAAATGAAATTTCTAAAACTCTAAAGGAGAAGAGATTTAGAGATGGGGCTTTGAGGATTGAGAATCCCAAAATAGTGTTTTTATATGATGAATTTGGAATTCCATATGATAGTACGTTTCATGAGCAAAAGGATTCGAATTTTCTTGTCGAGGAGTTCGTGCTTTTGGCAAACAGGACTGTGGCCGAAGTGATATCCAGAACTTTTCCTGATAGAGCATTATTGAGAAGGCATCCTAAACCTATATTCAAGAAACTTACAGAATTTGAATCATTTTGTTCTAAGCAGGGCTTTGAACTTGACACATCCTCTTCATTTCTGTTCCAACAGTCATTAGAGCAGATACGGATGAAATTTCATGATGATCCTTTGCTGTTTGATGCTGTGATATCCTATGCTACAAGGTCTACGCAGTTAGCGAGTTATTTCTGCAATGGAGAGCTAAAAGATGGTGAAAATGGGAGCTATTATTCACTGGCTGTCCCTTTGTACACACATTTCACGTCACCGTTGCGACGGTATGCTGATATCGTCGTCCATCGCACACTTGCAGCAGCTGTTGAGGCTGAGGAGTTGTATTTGAAGCACCAAAGTGATGAACGGATGAGATGTTTTACTGGCATGTATTTTGACAAAGATGCTGCTGATTCCTTAGAAGGTAGAGAAGCGTTATCATCTGCAGCATTGAGGCATGGAGTTCCATGCTCTAAATTACTTTCAGATGTCGCTGCGCACTGCAATAGCAGAAAATTGGCTAGTAAGCATGCTACGGATGCTTGTGATAAGCTCTATATGTGGGCTCTTTTGAAAGAAAAACAGATTTTGTTCTCAGATGCAAAGGTATTGGGCCTTGGTTCAAAATTTATGACTCTGTATATACAGAAGCTGGCGATTGAGCGGAGAATATACTACGAGGAAGTCAAAGGTTTGGCAATTGAATGGCTCGATGCTACATCTACGTTGGTGCTTAGTTTCCCTGACACTAGGCGCTCTCATGGGAGTAGAGATTCAATTAAGTGTAAGGCATTGGAAGATGTTGCATTGGTTATTTCCCCTTGCGACCTGACTGTTAAACAGAGCACGCTTGAAGGAGAAGCAAGCACAGAGGGTGCTGCTGCTTCAGATAGTGGAATCATCGAGCCTGCAGTTTTCCCCCTCACAGTGCAGCTCCTTTCAACGCTACCAGTAGCACTTCATGCCGTTGGTGGGGACGATGGAGCCATTGAGATAGGCGTTAGGCTGTACATGAGCTCATATTTAAGGTAA 3018 42.58 MRGSVEQSTSERNEDGGKEWKKKDRSNWRSEQKASIWRAVSCSSVNEIPREASECMENCRIDANLTEPSFYSSLTQHACQSNQPTEPGFTGRNKLSFSSLSPLHIGQQAEWSQNLRNQHHSMDTGRWAITSCPEQIASGSMPWIPMNQHSPPADVNSQMKYFTSHWSLDDVTRGLQKGDIFKALFRMNAHYRVEAYCKIDGIPVDVLIYGSASQNRAVEGDIVAMKMNPFSLWSRMKGTSEAHDNMHSLEDANVMSDSFWSSPSVDPIGRICAVIDLFPTKRPTGKVVAILKKSRQRGTIVGHLNVKKFLSFHDCGYVQLMPNDAKFPTMMVCAVDLPDCIKKRLDNGDATVESELVAARIDEWLEESSAPKALVMYVLGRGSRIESHIDAILFQNAILTCEFSRDSLSCLPHTPWKIPQEELQCRRDLRNLCIFTIDPPSALDLDDAFSVQKLANGIFRVGIHVADVSHFVLPDTALDKEARIRSTSVYLLRRKIPMLPPLLSENIGSLNPGVDRLAFSLFLDINHCGDVEDCWIGRTVICSCCKLSYGHAQDIIDSSKVLGHCVPQLHGQSTWLDIISSVRTLNEISKTLKEKRFRDGALRIENPKIVFLYDEFGIPYDSTFHEQKDSNFLVEEFVLLANRTVAEVISRTFPDRALLRRHPKPIFKKLTEFESFCSKQGFELDTSSSFLFQQSLEQIRMKFHDDPLLFDAVISYATRSTQLASYFCNGELKDGENGSYYSLAVPLYTHFTSPLRRYADIVVHRTLAAAVEAEELYLKHQSDERMRCFTGMYFDKDAADSLEGREALSSAALRHGVPCSKLLSDVAAHCNSRKLASKHATDACDKLYMWALLKEKQILFSDAKVLGLGSKFMTLYIQKLAIERRIYYEEVKGLAIEWLDATSTLVLSFPDTRRSHGSRDSIKCKALEDVALVISPCDLTVKQSTLEGEASTEGAAASDSGIIEPAVFPLTVQLLSTLPVALHAVGGDDGAIEIGVRLYMSSYLR 1005
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 18180260 18186497 + CmoCh04G024580.1 Cmo04g02458 381433

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g02458 1005 Gene3D - 298 383 - -
Cmo04g02458 1005 SMART RNB_2 426 773 IPR001900 GO:0003723|GO:0004540
Cmo04g02458 1005 MobiDBLite consensus disorder prediction 7 31 - -
Cmo04g02458 1005 SUPERFAMILY Nucleic acid-binding proteins 160 381 IPR012340 -
Cmo04g02458 1005 MobiDBLite consensus disorder prediction 1 31 - -
Cmo04g02458 1005 PANTHER DIS3-LIKE EXONUCLEASE 2 84 1003 - -
Cmo04g02458 1005 Pfam Dis3-like cold-shock domain 2 (CSD2) 317 396 IPR041505 -
Cmo04g02458 1005 Gene3D - 153 256 - -
Cmo04g02458 1005 PANTHER RIBONUCLEASE 84 1003 - -
Cmo04g02458 1005 SUPERFAMILY Nucleic acid-binding proteins 386 855 IPR012340 -
Cmo04g02458 1005 Pfam RNB domain 426 771 IPR001900 GO:0003723|GO:0004540
Cmo04g02458 1005 Hamap DIS3-like exonuclease 2 [DIS3L2]. 6 980 IPR028591 GO:0000175|GO:0034427
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g02458 K18758 DIS3L2; DIS3-like exonuclease 2 [EC:3.1.13.-] - csv:101205097 1424.84
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo04g02458 Cmo15g00709 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g02458 Cmo-Chr4:18180260 Cmo11g01346 Cmo-Chr11:9321294 3.52E-90 dispersed
Cmo15g00709 Cmo-Chr15:3443664 Cmo04g02458 Cmo-Chr4:18180260 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g297 . . . . . . . . Cmo04g02458 Cmo15g00709 . . . . Sed11g2304 . . Bhi04g02509 Tan11g0076 Cmetu03g1361 . . . Lcy10g2336 Cla08g00563 Cam08g0980 . Cco08g0679 Clacu08g0688 . Cre08g0502 . . Cone17ag1271 . . . . . Blo17g00182 . . Bda01g01418 Bpe02g01633 Bpe14g00376 Bma01g00828 Bma02g00223 . . . . . Car04g02276 Car15g00639 Cpe01g02038 . . . . . . . . . . . . . . . Lsi08g00412 . Chy03g00355 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004396 1 2 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 6 2 1 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo04g02458 Cmo_Chr04 FPKM 2.846958 2.974162 7.003046 7.512696 6.624509 5.664346 6.503442 0.0 0.057525 0.0