Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g02460 ATGGACGGCCAGAAAAATCCGGCGAAACTTACGAGAACCCAATCTTCGCTTCTCCGTTCATCCCCCACCGTCCGATCGATTCAGAGTTTGTCATCGGTTACCGATGAGGATGTAATCGAATCGGAAAACGTCGAACGGAATCGAAAGAATAAGTTACTTCGACGGAGCCGGTCATCGGCGAGGGCTTATTTTGTTAACCCTGTTTTGGGTTTGGCATTTCTTGCTTGTTTCACTCTGTTCTCCATTTCTTCATTCTGTTTCTTCTTTTACAAGCGGAAGGAAGAGATTGCGACTTCGGAGAATCTTCTCCTGGCGTTGATTTTTGTAGCGATTGCGCTCTTCTTTGCGAACAAGAACAAGGGCTTAATCCATCAAATGGGTTCGATTTTGAAACAATCGTGGGACGGCAATGCGCGGCGATTTGGGTTTTCGAGCGCCAATGTGAAGCCTGTGAAGTGGTTTATTGGAAGTCCGAACTCGGATTTGAGCGCCAAGAAGAAGCGGCAGATCATAAGAGAAGGGGTTGAGTTTTACAGTAATGGCGACTTCTATGAGGGCGAGTTTCATAAAGGGAAGTGCAATGGAAGTGGGGTTTATAATTACTTCGCTAATGGAAGGTACGAGGGAGATTGGATCGATGGTCGATATGATGGGTATGGCATTGAGAGCTGGGCGAGAGGGAGCCGGTACAGAGGGCAGTACAGGCAGGGGTTGCGGCATGGATTTGGGGTTTATAGGTTTTATACAGGGGATTCTTATGCAGGGGAATGGTTTAATGGACAGAGCCATGGCATTGGTATGCAGACCTGCTCTGATGGGAGCTGTTATGTGGGCGAGTTCAAGTATGGCGTTAAGCATGGCCTTGGCTGCTACCATTTTAGGAATGGAGATAGATATGCAGGTGAGTATTTTGGGGACAAAATCCATGGATTTGGAGTGTATCATTTTGCCAATGGCCATTGTTACGAAGGGTCATGGCACGAAGGACGTAAGCAAGGCTTCGGTATGTACACTTTCCGAAACATCGAGAGTAGTCGATGCGGCGAATGGGATGCAGGCCATCTCAAGCACCCTCTGCCCCCTCTTACTGACTTAGTCCTTGCAGCAGTCCAGGCAGCTCGAAAGACAGCGGCGAATGCGATAAAGATCAGTCCAGTGGACGGGGAAGTAAACAAAGCGGTCGTGGCTGCAAACAGGGCGGCCAATGCTGCTCGAGTAGCTGCAGTGAAGGCTGTTCAGAACAGAATGAAAGGGAAGTTTTGTGATATAGGCGTTTAG 1278 48.51 MDGQKNPAKLTRTQSSLLRSSPTVRSIQSLSSVTDEDVIESENVERNRKNKLLRRSRSSARAYFVNPVLGLAFLACFTLFSISSFCFFFYKRKEEIATSENLLLALIFVAIALFFANKNKGLIHQMGSILKQSWDGNARRFGFSSANVKPVKWFIGSPNSDLSAKKKRQIIREGVEFYSNGDFYEGEFHKGKCNGSGVYNYFANGRYEGDWIDGRYDGYGIESWARGSRYRGQYRQGLRHGFGVYRFYTGDSYAGEWFNGQSHGIGMQTCSDGSCYVGEFKYGVKHGLGCYHFRNGDRYAGEYFGDKIHGFGVYHFANGHCYEGSWHEGRKQGFGMYTFRNIESSRCGEWDAGHLKHPLPPLTDLVLAAVQAARKTAANAIKISPVDGEVNKAVVAANRAANAARVAAVKAVQNRMKGKFCDIGV 425
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 18192710 18195472 - CmoCh04G024600.1 Cmo04g02460 381435

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g02460 425 PANTHER PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE RELATED 21 418 - -
Cmo04g02460 425 PANTHER HISTONE H3 K4-SPECIFIC METHYLTRANSFERASE SET7/9 FAMILY PROTEIN 21 418 - -
Cmo04g02460 425 SUPERFAMILY Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain 174 260 - -
Cmo04g02460 425 Pfam MORN repeat 299 320 IPR003409 -
Cmo04g02460 425 Pfam MORN repeat 230 251 IPR003409 -
Cmo04g02460 425 Pfam MORN repeat 276 298 IPR003409 -
Cmo04g02460 425 Pfam MORN repeat 184 201 IPR003409 -
Cmo04g02460 425 Pfam MORN repeat 253 274 IPR003409 -
Cmo04g02460 425 Pfam MORN repeat 322 341 IPR003409 -
Cmo04g02460 425 Pfam MORN repeat 207 229 IPR003409 -
Cmo04g02460 425 SUPERFAMILY Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain 249 353 - -
Cmo04g02460 425 SMART morn 205 226 IPR003409 -
Cmo04g02460 425 SMART morn 251 272 IPR003409 -
Cmo04g02460 425 SMART morn 182 204 IPR003409 -
Cmo04g02460 425 SMART morn 320 341 IPR003409 -
Cmo04g02460 425 SMART morn 274 295 IPR003409 -
Cmo04g02460 425 SMART morn 228 249 IPR003409 -
Cmo04g02460 425 SMART morn 297 318 IPR003409 -
Cmo04g02460 425 Gene3D - 305 359 - -
Cmo04g02460 425 Gene3D - 214 258 - -
Cmo04g02460 425 Gene3D - 259 304 - -
Cmo04g02460 425 Gene3D - 171 213 - -
Cmo04g02460 425 MobiDBLite consensus disorder prediction 7 23 - -
Cmo04g02460 425 MobiDBLite consensus disorder prediction 1 23 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g02460 - - - csv:101219961 672.159
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo04g02460 Cmo09g00798 CCT
Cmo04g02460 Cmo15g00707 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01438 Cmo-Chr1:11231965 Cmo04g02460 Cmo-Chr4:18192710 0 dispersed
Cmo04g02460 Cmo-Chr4:18192710 Cmo16g01146 Cmo-Chr16:8183021 7.83E-103 dispersed
Cmo15g00707 Cmo-Chr15:3437314 Cmo04g02460 Cmo-Chr4:18192710 0 wgd
Cmo04g02460 Cmo-Chr4:18192710 Cmo09g00798 Cmo-Chr9:4085920 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g292 . Blo12g00674 . Bda03g00530 Bpe02g00076 Bpe04g00484 . . Cmo04g02460 Cmo15g00707 . Cma09g00805 . . . Cpe06g00640 . . . . . . . . Cla08g00565 Cam08g0982 Cec08g0571 Cco08g0681 Clacu08g0690 . Cre08g0504 Cone4ag1389 Cone7ag1546 Cone17ag1274 Cone20ag0452 Lsi04g02379 Csa04g01814 . . . . Bda11g00744 . . . . . . . Cmo09g00798 . . Car04g02278 Car09g00721 Cpe01g02040 . Bhi09g02656 . . . Hepe01g2270 Mch11g0819 . Cla11g01525 Cam11g1585 Cec11g1614 Cco11g1615 Clacu11g1742 Cmu11g1560 Cre11g1976 Lsi08g00414 . Chy07g00660 Cme07g00868
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001672 2 2 3 1 2 1 4 2 1 2 2 2 3 2 2 4 2 4 4 2 2 2 2 2 2 2 2 4 2 1 68
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo04g02460 Cmo_Chr04 FPKM 14.934555 19.640039 13.235227 15.308764 9.790126 10.483849 10.678226 6.925198 7.726663 8.314361